Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G018200 Populus trichocarpa HOM05D007060 ORTHO05D009087 1.0e-295 1019.2 492 100.0
Sabra08G0011800 Salix brachista HOM05D007060 ORTHO05D009087 4.6e-227 791.2 402 94.8
Manes.07G085000 Manihot esculenta HOM05D007060 ORTHO05D009087 7.6e-222 773.9 488 75.0
CiPaw.13G043400 Carya illinoinensis HOM05D007060 ORTHO05D009087 2.0e-214 749.2 486 73.3
TWI63G0697 Tripterygium wilfordii HOM05D007060 ORTHO05D009087 1.8e-210 736.1 500 71.2
TAR623G0941 Trochodendron aralioides HOM05D007060 ORTHO05D009087 3.7e-208 728.4 486 70.6
Cfa010526 Carpinus fangiana HOM05D007060 ORTHO05D009087 1.8e-207 726.1 484 71.5
Duzib106G1772 Durio zibethinus HOM05D007060 ORTHO05D009087 2.0e-206 722.6 476 72.1
Thecc.10G116400 Theobroma cacao HOM05D007060 ORTHO05D009087 2.0e-206 722.6 471 71.8
Prupe.4G266300 Prunus persica HOM05D007060 ORTHO05D009087 3.4e-206 721.8 491 69.9
CSS0031015 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.2e-203 713.4 499 68.9
CSS0002387 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.6e-203 713.0 499 69.1
CANSAT56G2168 Cannabis sativa HOM05D007060 ORTHO05D009087 1.6e-203 713.0 492 68.5
CSS0046160 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.6e-203 711.4 499 68.9
CSS0035496 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 6.0e-203 711.1 501 69.3
CSS0035234 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 7.9e-203 710.7 499 69.3
CSS0040194 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.0e-202 710.3 499 68.7
CSS0037157 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.3e-202 709.1 499 68.7
CSS0040116 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.3e-202 709.1 501 69.1
CSS0005765 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.1e-201 706.8 500 68.6
CSS0014623 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 1.5e-201 706.4 499 68.3
Gorai.N007800 Gossypium raimondii HOM05D007060 ORTHO05D009087 1.9e-201 706.1 471 70.7
CSS0019796 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.5e-201 705.7 499 68.3
CSS0028923 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 2.5e-201 705.7 499 68.3
CSS0037937 Camellia sinensis var. sinensis HOM05D007060 ORTHO05D009087 4.3e-201 704.9 500 68.0
Cc02_g09400 Coffea canephora HOM05D007060 ORTHO05D009087 4.3e-201 704.9 496 70.0
MD03G1165900 Malus domestica HOM05D007060 ORTHO05D009087 6.9e-199 697.6 485 67.6
RcHm_v2.0_Chr1g0331951 Rosa chinensis HOM05D007060 ORTHO05D009087 6.5e-197 691.0 501 65.1
QL04p047886 Quercus lobata HOM05D007060 ORTHO05D009087 3.0e-194 682.2 400 78.2
Atru.chr12.1066 Acer truncatum HOM05D007060 ORTHO05D009087 4.3e-193 678.3 399 79.2
Nn6g34700 Nelumbo nucifera HOM05D007060 ORTHO05D009087 7.4e-193 677.6 498 66.3
Glyma.10G195800 Glycine max HOM05D007060 ORTHO05D009087 9.7e-193 677.2 486 67.7
Lj5g0018387 Lotus japonicus HOM05D007060 ORTHO05D009087 9.7e-193 677.2 473 68.3
Psat6g172000 Pisum sativum HOM05D007060 ORTHO05D009087 1.1e-191 673.7 485 67.2
Medtr1g090540 Medicago truncatula HOM05D007060 ORTHO05D009087 3.4e-190 668.7 480 66.7
AL3G22100 Arabidopsis lyrata HOM05D007060 ORTHO05D009087 7.7e-190 667.5 489 66.1
Aqoxy1G00669 Aquilegia oxysepala HOM05D007060 ORTHO05D009087 1.7e-189 666.4 476 67.6
TPR.G37861 Trifolium pratense HOM05D007060 ORTHO05D009087 6.5e-189 664.5 487 66.5
Carub.0003s0986 Capsella rubella HOM05D007060 ORTHO05D009087 1.1e-188 663.7 492 65.4
Thhalv10020598m.g Eutrema salsugineum HOM05D007060 ORTHO05D009087 1.9e-188 662.9 475 66.7
Sp3g08940 Schrenkiella parvula HOM05D007060 ORTHO05D009087 2.5e-188 662.5 489 65.4
HanXRQChr02g0053541 Helianthus annuus HOM05D007060 ORTHO05D009087 2.3e-186 656.0 491 64.0
PGR142G1122 Punica granatum HOM05D007060 ORTHO05D009087 6.7e-186 654.4 489 64.8
AT3G10630 Arabidopsis thaliana HOM05D007060 ORTHO05D009087 8.8e-186 654.1 489 65.2
GSVIVG01034635001 Vitis vinifera HOM05D007060 ORTHO05D009087 1.5e-185 653.3 397 76.8
Dinv08415 Davidia involucrata HOM05D007060 ORTHO05D009087 4.4e-185 651.7 360 82.2
Solyc11g006560.3 Solanum lycopersicum HOM05D007060 ORTHO05D009087 9.7e-185 650.6 475 65.9
CARHR085210 Cardamine hirsuta HOM05D007060 ORTHO05D009087 3.7e-184 648.7 488 63.1
Cpa.g.sc54.25 Carica papaya HOM05D007060 ORTHO05D009087 3.7e-184 648.7 400 74.0
THA.LOC104816472 Tarenaya hassleriana HOM05D007060 ORTHO05D009087 6.3e-184 647.9 491 64.6
Lj3P923T49 Lonicera japonica HOM05D007060 ORTHO05D009087 1.1e-183 647.1 400 75.2
PGSC0003DMG400001998 Solanum tuberosum HOM05D007060 ORTHO05D009087 1.8e-183 646.4 476 65.5
ClCG05G021920 Citrullus lanatus HOM05D007060 ORTHO05D009087 9.1e-183 644.0 484 64.9
MSTRG.9036 Avicennia marina HOM05D007060 ORTHO05D009087 2.0e-182 642.9 500 62.2
Migut.F00850 Erythranthe guttata HOM05D007060 ORTHO05D009087 3.5e-182 642.1 478 63.0
Hma1.2p1_0457F.1_g156870 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 7.7e-182 641.0 400 73.8
Sed0007060 Sechium edule HOM05D007060 ORTHO05D009087 1.7e-181 639.8 492 61.4
Ciclev10015484m.g Citrus clementina HOM05D007060 ORTHO05D009087 2.2e-181 639.4 403 74.7
Nitab4.5_0001781g0140 Nicotiana tabacum HOM05D007060 ORTHO05D009087 3.8e-181 638.6 402 74.1
Oeu033276.1 Olea europaea HOM05D007060 ORTHO05D009087 3.8e-181 638.6 416 70.7
BolC1t05373H Brassica oleracea HOM05D007060 ORTHO05D009087 8.5e-181 637.5 474 65.2
PGR142G0278 Punica granatum HOM05D007060 ORTHO05D009087 1.9e-180 636.3 489 63.8
A01p41570 Brassica napus HOM05D007060 ORTHO05D009087 9.4e-180 634.0 477 65.0
BraA01t04232Z Brassica rapa HOM05D007060 ORTHO05D009087 1.2e-179 633.6 471 65.6
Sopen11g002500 Solanum pennellii HOM05D007060 ORTHO05D009087 1.6e-179 633.3 404 71.8
COL.COLO4_07825 Corchorus olitorius HOM05D007060 ORTHO05D009087 2.1e-179 632.9 404 72.3
VMungo0720G1293 Vigna mungo HOM05D007060 ORTHO05D009087 2.1e-179 632.9 488 63.7
Nitab4.5_0007799g0060 Nicotiana tabacum HOM05D007060 ORTHO05D009087 1.8e-178 629.8 398 73.1
MELO3C012336.2 Cucumis melo HOM05D007060 ORTHO05D009087 8.8e-178 627.5 484 64.0
CAN.G143.24 Capsicum annuum HOM05D007060 ORTHO05D009087 4.4e-177 625.2 399 72.2
CsaV3_5G035220 Cucumis sativus L. HOM05D007060 ORTHO05D009087 7.4e-177 624.4 484 63.8
Peaxi162Scf00725g00056 Petunia axillaris HOM05D007060 ORTHO05D010136 2.2e-176 622.9 395 73.7
Ca_10429_v3 Cicer arietinum L. HOM05D007060 ORTHO05D009087 1.8e-175 619.8 392 74.2
Gohir.D06G177400 Gossypium hirsutum HOM05D007060 ORTHO05D009087 1.7e-173 613.2 370 75.4
Phvul.007G138500 Phaseolus vulgaris HOM05D007060 ORTHO05D009087 4.2e-172 608.6 397 71.3
Lsat_1_v5_gn_2_105821 Lactuca sativa HOM05D007060 ORTHO05D009087 7.2e-172 607.8 402 69.4
ECA238G3502 Erigeron canadensis HOM05D007060 ORTHO05D009087 2.8e-168 595.9 400 68.0
Rhsim03G0096200 Rhododendron simsii HOM05D007060 ORTHO05D009087 3.8e-165 585.5 401 69.6
DCAR_005120 Daucus carota HOM05D007060 ORTHO05D009087 7.2e-164 581.3 371 71.4
Sopen11g002460 Solanum pennellii HOM05D007060 ORTHO05D009087 9.4e-164 580.9 368 71.2
unitig_46.g18644 Utricularia gibba HOM05D007060 ORTHO05D009087 9.4e-164 580.9 476 59.0
CDE06G1445 Ceratophyllum demersum HOM05D007060 ORTHO05D009087 6.8e-162 574.7 402 67.2
Sopen11g002480 Solanum pennellii HOM05D007060 ORTHO05D009087 9.8e-161 570.9 359 72.4
Actinidia03837 Actinidia chinensis HOM05D007060 ORTHO05D009087 1.7e-160 570.1 347 76.4
SalBow1G5690 Salvia bowleyana HOM05D007060 ORTHO05D009087 1.8e-159 566.6 466 60.5
Eucgr.G02680 Eucalyptus grandis HOM05D007060 ORTHO05D009087 1.1e-156 557.4 349 73.9
SEGI_33772 Sequoiadendron giganteum HOM05D007060 ORTHO05D009087 1.4e-154 550.4 466 58.8
Os09g0296700 Oryza sativa ssp. japonica HOM05D007060 ORTHO05D009087 5.2e-154 548.5 446 59.9
ATR0772G206 Amborella trichopoda HOM05D007060 ORTHO05D009087 1.3e-152 543.9 490 56.1
BcaB04g21186 Brassica carinata HOM05D007060 ORTHO05D009087 1.3e-152 543.9 485 56.5
Zm00001eb309100 Zea mays HOM05D007060 ORTHO05D009087 1.0e-149 534.3 415 61.7
SMO203G0203 Selaginella moellendorffii HOM05D007060 ORTHO05D009087 1.6e-131 473.8 391 57.5
AagrBONN_evm.TU.Sc2ySwM_344.3615 Anthoceros agrestis HOM05D007060 ORTHO05D009087 4.0e-130 469.2 385 59.0
Lalb_Chr21g0312821 Lupinus albus HOM05D007060 ORTHO05D009087 1.4e-127 460.7 293 73.4
SHI22512 Sapria himalayana HOM05D007060 ORTHO05D009087 6.6e-125 451.8 352 64.2
Glyma.20G194300 Glycine max HOM05D007060 ORTHO05D009087 2.4e-122 443.4 465 52.5
Pp3c6_17860 Physcomitrium patens HOM05D007060 ORTHO05D009087 8.4e-104 381.7 318 56.6
CBR_g29369 Chara braunii HOM05D007060 ORTHO05D009087 1.2e-94 351.3 286 60.1
Hma1.2p1_0826F.1_g224930 Hydrangea macrophylla HOM05D007060 ORTHO05D009087 2.0e-89 334.0 211 72.5
MCO11G427 Micromonas commoda HOM05D007060 ORTHO05D009087 1.3e-85 321.2 421 42.0
Cre02.g118801 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 7.2e-79 298.9 425 39.3
PRCOL_00001658 Prasinoderma coloniale HOM05D007060 ORTHO05D009087 1.2e-70 271.6 439 37.8
TAR625G0310 Trochodendron aralioides HOM05D007060 ORTHO05D009087 1.4e-69 268.1 302 47.4
FvH4_5g28400 Fragaria vesca HOM05D007060 ORTHO05D009087 9.4e-63 245.4 160 68.8
FAN24G3568 Fragaria x ananassa HOM05D007060 ORTHO05D009087 9.4e-63 245.4 400 37.2
HPP92_006362 Vanilla planifolia HOM05D007060 ORTHO05D009087 2.9e-40 170.6 203 46.3
Cre09.g386732 Chlamydomonas reinhardtii HOM05D007060 ORTHO05D009087 4.7e-38 163.3 363 30.6
PRCOL_00006151 Prasinoderma coloniale HOM05D007060 ORTHO05D048979 2.1e-30 137.9 305 33.1
FAN03G2415 Fragaria x ananassa HOM05D007060 ORTHO05D009087 4.7e-30 136.7 89 71.9
MCO05G161 Micromonas commoda HOM05D007060 ORTHO05D048979 1.5e-20 105.1 245 33.5
MBI01_g04536_MAGBIO Magnolia biondii HOM05D007060 ORTHO05D009087 4.4e-20 103.6 64 73.4
AL1G24060 Arabidopsis lyrata HOM05D007060 ORTHO05D023607 7.3e-15 86.3 59 61.0
CBR_g29367 Chara braunii HOM05D007060 ORTHO05D009087 1.4e-10 72.0 82 46.3


User provided reference genes

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