Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G016801 Populus trichocarpa HOM05D007506 ORTHO05D008409 5.0e-28 127.5 86 100.0
Sabra08G0010500 Salix brachista HOM05D007506 ORTHO05D008409 7.7e-21 103.6 85 81.2
Potri.010G240401 Populus trichocarpa HOM05D007506 ORTHO05D008409 2.5e-19 98.6 86 79.1
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 3.6e-18 94.7 86 75.6
Haze_03301 Corylus avellana HOM05D007506 ORTHO05D008409 6.3e-15 84.0 60 78.3
Manes.07G086800 Manihot esculenta HOM05D007506 ORTHO05D008409 3.1e-14 81.6 60 80.0
RcHm_v2.0_Chr1g0331731 Rosa chinensis HOM05D007506 ORTHO05D008409 4.1e-14 81.3 85 60.0
Ciclev10017346m.g Citrus clementina HOM05D007506 ORTHO05D008409 7.0e-14 80.5 58 81.0
THA.LOC104816468 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 4.5e-13 77.8 87 57.5
Manes.10G062500 Manihot esculenta HOM05D007506 ORTHO05D008409 1.0e-12 76.6 82 69.5
Sabra10G0188200 Salix brachista HOM05D007506 ORTHO05D008409 3.8e-12 74.7 81 61.7
Thecc.10G114000 Theobroma cacao HOM05D007506 ORTHO05D008409 3.8e-12 74.7 61 73.8
Atru.chr12.1049 Acer truncatum HOM05D007506 ORTHO05D008409 5.0e-12 74.3 57 75.4
QL04p046828 Quercus lobata HOM05D007506 ORTHO05D008409 1.5e-11 72.8 85 61.2
PGR142G2547 Punica granatum HOM05D007506 ORTHO05D008409 1.9e-11 72.4 86 66.3
THA.LOC109117254 Tarenaya hassleriana HOM05D012863 ORTHO05D008409 2.5e-11 72.0 92 52.2
Cfa010331 Carpinus fangiana HOM05D007506 ORTHO05D008409 4.2e-11 71.2 50 78.0
Duzib106G0675 Durio zibethinus HOM05D007506 ORTHO05D008409 5.5e-11 70.9 63 68.3
TWI38G1985 Tripterygium wilfordii HOM05D007506 ORTHO05D008409 5.5e-11 70.9 78 74.4
Cpa.g.sc54.9 Carica papaya HOM05D007506 ORTHO05D008409 7.2e-11 70.5 54 77.8
GSVIVG01010679001 Vitis vinifera HOM05D007506 ORTHO05D008409 4.0e-09 64.7 41 82.9
Ca_25653_v3 Cicer arietinum L. HOM05D007506 ORTHO05D008409 2.6e-08 62.0 87 59.8
ClCG08G008330 Citrullus lanatus HOM05D007506 ORTHO05D008409 4.4e-08 61.2 55 63.6
CiPaw.13G041100 Carya illinoinensis HOM05D007506 ORTHO05D008409 7.5e-08 60.5 37 78.4
MELO3C019903.2 Cucumis melo HOM05D007506 ORTHO05D008409 7.5e-08 60.5 55 63.6
MD07G1070900 Malus domestica HOM05D007506 ORTHO05D008409 9.8e-08 60.1 68 70.6
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 1.3e-07 59.7 63 61.9
AT5G04750 Arabidopsis thaliana HOM05D012863 ORTHO05D008409 1.7e-07 59.3 67 56.7
CARHR208540 Cardamine hirsuta HOM05D012863 ORTHO05D008409 1.7e-07 59.3 68 55.9
Carub.0006s0364 Capsella rubella HOM05D012863 ORTHO05D008409 2.2e-07 58.9 92 50.0
TAR633G2594 Trochodendron aralioides HOM05D007506 ORTHO05D008409 2.8e-07 58.5 62 56.5
AL6G14410 Arabidopsis lyrata HOM05D012863 ORTHO05D008409 4.9e-07 57.8 91 49.5
CANSAT56G4328 Cannabis sativa HOM05D007506 ORTHO05D008409 4.9e-07 57.8 83 56.6
CSS0050385 Camellia sinensis var. sinensis HOM05D007506 ORTHO05D008409 6.3e-07 57.4 57 63.2
Hma1.2p1_0756F.1_g213210 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 8.3e-07 57.0 58 58.6
Hma1.2p1_0756F.1_g213215 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 8.3e-07 57.0 58 58.6
Hma1.2p1_1491F.1_g286710 Hydrangea macrophylla HOM05D007506 ORTHO05D008409 8.3e-07 57.0 58 58.6
FvH4_7g05151 Fragaria vesca HOM05D007506 ORTHO05D008409 1.1e-06 56.6 83 49.4
Sp6g38070 Schrenkiella parvula HOM05D012863 ORTHO05D008409 1.1e-06 56.6 69 56.5
Hund06790 Selenicereus undatus HOM05D007506 ORTHO05D008409 1.1e-06 56.6 85 48.2
CDE12G0642 Ceratophyllum demersum HOM05D007506 ORTHO05D008409 1.4e-06 56.2 64 65.6
Cc02_g09560 Coffea canephora HOM05D007506 ORTHO05D008409 1.4e-06 56.2 58 62.1
CsaV3_6G004310 Cucumis sativus L. HOM05D007506 ORTHO05D008409 1.8e-06 55.8 55 61.8
Dinv12843 Davidia involucrata HOM05D007506 ORTHO05D008409 1.8e-06 55.8 66 59.1
Sed0023104 Sechium edule HOM05D007506 ORTHO05D008409 1.8e-06 55.8 56 62.5
Glyma.10G277900 Glycine max HOM05D007506 ORTHO05D008409 2.4e-06 55.5 88 52.3
MBI17_g08330_MAGBIO Magnolia biondii HOM05D007506 ORTHO05D008409 2.4e-06 55.5 61 57.4
Medtr1g111840 Medicago truncatula HOM05D007506 ORTHO05D008409 2.4e-06 55.5 88 50.0
Migut.F00865 Erythranthe guttata HOM05D007506 ORTHO05D008409 3.1e-06 55.1 88 56.8
FAN05G5073 Fragaria x ananassa HOM05D007506 ORTHO05D008409 3.1e-06 55.1 79 50.6
FAN08G2571 Fragaria x ananassa HOM05D007506 ORTHO05D008409 3.1e-06 55.1 63 58.7
FAN28G2052 Fragaria x ananassa HOM05D007506 ORTHO05D008409 3.1e-06 55.1 63 58.7
Lalb_Chr02g0146201 Lupinus albus HOM05D007506 ORTHO05D008409 3.1e-06 55.1 88 56.8
SalBow3G3829 Salvia bowleyana HOM05D007506 ORTHO05D008409 3.1e-06 55.1 46 60.9
PSO801G0534 Papaver somniferum HOM05D007506 ORTHO05D008409 4.1e-06 54.7 63 55.6
SEGI_39886 Sequoiadendron giganteum HOM05D007506 ORTHO05D008409 7.0e-06 53.9 52 59.6
HanXRQChr12g0368271 Helianthus annuus HOM05D021830 ORTHO05D008409 9.2e-06 53.5 56 58.9
Lj5g0016646 Lotus japonicus HOM05D007506 ORTHO05D008409 9.2e-06 53.5 84 59.5


User provided reference genes

Program Settings