Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G016150 Populus trichocarpa HOM05D008040 ORTHO05D010075 1.2e-91 339.7 158 100.0
Potri.008G016300 Populus trichocarpa HOM05D008040 ORTHO05D010075 5.9e-67 257.7 145 83.4
Sabra08G0010200 Salix brachista HOM05D008040 ORTHO05D010075 7.2e-57 224.2 150 71.3
Sabra08G0010400 Salix brachista HOM05D008040 ORTHO05D010075 8.0e-56 220.7 150 70.7
Manes.09G072126 Manihot esculenta HOM05D008040 ORTHO05D010075 2.3e-31 139.4 140 48.6
COL.COLO4_12486 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.6e-30 136.0 149 48.3
COL.COLO4_10414 Corchorus olitorius HOM05D008040 ORTHO05D010075 2.4e-28 129.4 151 47.0
TWI77G0815 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 3.2e-28 129.0 151 45.0
TWI12G0677 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 4.6e-27 125.2 155 47.1
TWI12G0410 Tripterygium wilfordii HOM05D008040 ORTHO05D010075 5.6e-25 118.2 176 39.2
CSS0013591 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 7.3e-25 117.9 149 45.0
COL.COLO4_10419 Corchorus olitorius HOM05D026534 ORTHO05D010075 1.2e-24 117.1 145 44.1
CSS0010874 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 2.8e-24 115.9 151 45.0
vmacro17325 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 2.8e-24 115.9 143 46.9
COL.COLO4_31564 Corchorus olitorius HOM05D008040 ORTHO05D010075 8.0e-24 114.4 154 45.5
CSS0049849 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 1.0e-23 114.0 153 45.1
COL.COLO4_31566 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.0e-23 114.0 153 44.4
CSS0016313 Camellia sinensis var. sinensis HOM05D008040 ORTHO05D010075 2.3e-23 112.8 152 44.7
COL.COLO4_31563 Corchorus olitorius HOM05D008040 ORTHO05D010075 6.8e-23 111.3 157 42.0
COL.COLO4_30844 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.2e-22 110.5 151 42.4
COL.COLO4_31567 Corchorus olitorius HOM05D008040 ORTHO05D010075 1.2e-22 110.5 153 43.8
Ciclev10006596m.g Citrus clementina HOM05D008040 ORTHO05D010075 9.2e-20 100.9 138 41.3
Potri.013G110300 Populus trichocarpa HOM05D008040 ORTHO05D010075 6.0e-19 98.2 155 40.0
Potri.013G109900 Populus trichocarpa HOM05D008040 ORTHO05D010075 7.8e-19 97.8 155 40.0
vmacro17323 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 6.6e-18 94.7 125 44.8
vmacro17324 Vaccinium macrocarpon HOM05D008040 ORTHO05D010075 3.3e-17 92.4 121 45.5
AUR62017713 Chenopodium quinoa HOM05D008040 ORTHO05D010075 5.6e-17 91.7 157 36.9
Aqoxy6G00905 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 2.8e-16 89.4 158 35.4
EL10Ac2g04156 Beta vulgaris HOM05D008040 ORTHO05D010075 2.8e-16 89.4 169 33.7
AUR62035995 Chenopodium quinoa HOM05D008040 ORTHO05D010075 2.8e-16 89.4 169 33.1
AUR62008579 Chenopodium quinoa HOM05D008040 ORTHO05D010075 2.3e-15 86.3 171 35.1
Ah.07g206250 Amaranthus hybridus HOM05D008040 ORTHO05D010075 4.4e-14 82.0 147 36.1
Oeu009728.1 Olea europaea HOM05D008040 ORTHO05D010075 7.5e-14 81.3 72 56.9
SGA_v2.0_scaffold286G47111 Striga asiatica HOM05D008040 ORTHO05D010075 7.5e-14 81.3 81 51.9
Oeu009732.1 Olea europaea HOM05D001586 ORTHO05D001543 2.2e-13 79.7 84 52.4
Prupe.7G151200 Prunus persica HOM05D008040 ORTHO05D010075 2.2e-13 79.7 153 34.0
QL04p017690 Quercus lobata HOM05D008040 ORTHO05D010075 4.9e-13 78.6 153 34.6
QL04p017640 Quercus lobata HOM05D008040 ORTHO05D010075 6.4e-13 78.2 153 33.3
SGA_v2.0_scaffold286G47115 Striga asiatica HOM05D008040 ORTHO05D010075 1.1e-12 77.4 81 50.6
Ah.06g196070 Amaranthus hybridus HOM05D008040 ORTHO05D010075 6.0e-11 71.6 141 34.0
Ciclev10026974m.g Citrus clementina HOM05D008040 ORTHO05D010075 1.0e-10 70.9 81 48.1
Aqoxy3G02432 Aquilegia oxysepala HOM05D008040 ORTHO05D010075 1.3e-10 70.5 105 39.0
FvH4_1g14191 Fragaria vesca HOM05D008040 ORTHO05D010075 3.9e-10 68.9 74 50.0
FAN19G2662 Fragaria x ananassa HOM05D008040 ORTHO05D010075 3.9e-10 68.9 74 50.0
SGA_v2.0_scaffold147G36326 Striga asiatica HOM05D008040 ORTHO05D010075 6.6e-10 68.2 75 49.3
RcHm_v2.0_Chr2g0102901 Rosa chinensis HOM05D008040 ORTHO05D010075 8.6e-10 67.8 82 47.6
Thecc.06G054900 Theobroma cacao HOM05D000664 ORTHO05D000491 8.6e-10 67.8 145 33.8
PSO478G0543 Papaver somniferum HOM05D000664 ORTHO05D000491 1.1e-09 67.4 157 31.8
Nitab4.5_0005142g0030 Nicotiana tabacum HOM05D008040 ORTHO05D010075 1.5e-09 67.0 151 31.8
DCAR_018081 Daucus carota HOM05D000664 ORTHO05D000491 1.9e-09 66.6 147 33.3
Gohir.D07G047500 Gossypium hirsutum HOM05D000664 ORTHO05D000491 1.9e-09 66.6 154 33.1
FAN28G2855 Fragaria x ananassa HOM05D008040 ORTHO05D010075 3.3e-09 65.9 154 32.5
Rhsim03G0248800 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.3e-09 65.9 149 32.9
Thecc.03G149500 Theobroma cacao HOM05D000664 ORTHO05D000491 4.3e-09 65.5 146 34.2
PSO782G4774 Papaver somniferum HOM05D000664 ORTHO05D000491 7.3e-09 64.7 151 33.8
Sopen04g027220 Solanum pennellii HOM05D000173 ORTHO05D000316 9.5e-09 64.3 153 30.7
Thecc.06G054800 Theobroma cacao HOM05D000664 ORTHO05D000491 9.5e-09 64.3 145 33.1
Duzib068G1024 Durio zibethinus HOM05D000664 ORTHO05D000491 1.2e-08 63.9 144 34.0
PSO170G1835 Papaver somniferum HOM05D000664 ORTHO05D000491 1.6e-08 63.5 61 52.5
PSO325G0007 Papaver somniferum HOM05D000664 ORTHO05D000491 1.6e-08 63.5 61 52.5
FAN19G2417 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.1e-08 63.2 74 45.9
FAN23G2403 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.1e-08 63.2 74 45.9
FAN26G0836 Fragaria x ananassa HOM05D008040 ORTHO05D010075 2.1e-08 63.2 74 45.9
Nitab4.5_0009785g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.1e-08 63.2 155 32.3
Cc02_g04650 Coffea canephora HOM05D000664 ORTHO05D000491 2.8e-08 62.8 154 31.8
MBI01_g31985_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 2.8e-08 62.8 144 34.7
Nitab4.5_0000375g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 2.8e-08 62.8 157 35.0
COL.COLO4_37361 Corchorus olitorius HOM05D000664 ORTHO05D000491 3.6e-08 62.4 150 34.0
Rhsim03G0249000 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.6e-08 62.4 145 32.4
Sc09g0004440 Simmondsia chinensis HOM05D000664 ORTHO05D000491 3.6e-08 62.4 158 31.6
Gorai.001G050600 Gossypium raimondii HOM05D000664 ORTHO05D000491 4.7e-08 62.0 152 31.6
Hma1.2p1_0432F.1_g152020 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 4.7e-08 62.0 153 34.0
COL.COLO4_37365 Corchorus olitorius HOM05D000664 ORTHO05D000491 6.2e-08 61.6 154 33.1
RcHm_v2.0_Chr2g0102561 Rosa chinensis HOM05D008040 ORTHO05D010075 6.2e-08 61.6 69 49.3
FvH4_1g14071 Fragaria vesca HOM05D008040 ORTHO05D010075 8.1e-08 61.2 72 45.8
Hma1.2p1_1404F.1_g281360 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 8.1e-08 61.2 158 29.1
Sabra01G0178200 Salix brachista HOM05D000664 ORTHO05D000491 8.1e-08 61.2 142 34.5
Solyc04g071270.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 8.1e-08 61.2 153 30.1
PSO729G0187 Papaver somniferum HOM05D000664 ORTHO05D000491 1.1e-07 60.8 149 32.2
Potri.010G254000 Populus trichocarpa HOM05D000664 ORTHO05D000491 1.1e-07 60.8 145 30.3
Ah.02g122840 Amaranthus hybridus HOM05D008040 ORTHO05D010075 1.4e-07 60.5 139 28.8
CARHR205550 Cardamine hirsuta HOM05D000664 ORTHO05D000491 1.4e-07 60.5 141 31.9
COL.COLO4_37360 Corchorus olitorius HOM05D000664 ORTHO05D000491 1.4e-07 60.5 149 33.6
MBI05_g20724_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 1.4e-07 60.5 143 33.6
PGSC0003DMG400021824 Solanum tuberosum HOM05D000664 ORTHO05D000491 1.4e-07 60.5 158 31.0
vmacro06136 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 1.4e-07 60.5 143 32.2
Migut.F01254 Erythranthe guttata HOM05D000664 ORTHO05D000491 1.8e-07 60.1 148 34.5
MD15G1268400 Malus domestica HOM05D008040 ORTHO05D010075 1.8e-07 60.1 65 47.7
PSO017G0065 Papaver somniferum HOM05D000664 ORTHO05D000491 2.3e-07 59.7 151 33.1
SGA_v2.0_scaffold136G35021 Striga asiatica HOM05D000664 ORTHO05D000491 2.3e-07 59.7 143 31.5
Solyc05g051583.1 Solanum lycopersicum HOM05D000664 ORTHO05D000491 3.1e-07 59.3 151 32.5
TAR626G1309 Trochodendron aralioides HOM05D000664 ORTHO05D000491 3.1e-07 59.3 150 32.7
Lsat_1_v5_gn_3_40560 Lactuca sativa HOM05D000664 ORTHO05D000491 5.2e-07 58.5 141 31.9
PSO339G5554 Papaver somniferum HOM05D000664 ORTHO05D000491 5.2e-07 58.5 154 29.2
EL10Ac5g12381 Beta vulgaris HOM05D000664 ORTHO05D000491 6.8e-07 58.2 149 28.2
PSO339G3463 Papaver somniferum HOM05D008040 ORTHO05D010075 6.8e-07 58.2 141 29.8
PSO761G0098 Papaver somniferum HOM05D008040 ORTHO05D010075 6.8e-07 58.2 143 30.1
AL6G17920 Arabidopsis lyrata HOM05D000664 ORTHO05D000491 8.9e-07 57.8 142 30.3
vmacro06138 Vaccinium macrocarpon HOM05D000664 ORTHO05D000491 8.9e-07 57.8 146 30.1
Hma1.2p1_1883F.1_g306450 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 1.2e-06 57.4 167 29.3
Nn3g18583 Nelumbo nucifera HOM05D000664 ORTHO05D000491 1.2e-06 57.4 146 30.8
Nitab4.5_0000032g0090 Nicotiana tabacum HOM05D000664 ORTHO05D000491 1.2e-06 57.4 151 29.1
Dinv16863 Davidia involucrata HOM05D000664 ORTHO05D000491 1.5e-06 57.0 90 38.9
MD12G1211200 Malus domestica HOM05D008040 ORTHO05D010075 1.5e-06 57.0 154 30.5
HanXRQChr06g0171101 Helianthus annuus HOM05D000664 ORTHO05D000491 2.0e-06 56.6 139 30.9
Lsat_1_v5_gn_9_51401 Lactuca sativa HOM05D000664 ORTHO05D000491 2.0e-06 56.6 147 33.3
RcHm_v2.0_Chr4g0398061 Rosa chinensis HOM05D000664 ORTHO05D000491 2.0e-06 56.6 146 30.8
SalBow5G1081 Salvia bowleyana HOM05D002420 ORTHO05D002422 2.0e-06 56.6 137 30.7
Carub.0006s0659 Capsella rubella HOM05D000664 ORTHO05D000491 2.6e-06 56.2 143 30.8
Rhsim03G0162400 Rhododendron simsii HOM05D000664 ORTHO05D000491 2.6e-06 56.2 157 29.9
SGA_v2.0_scaffold3565G54362 Striga asiatica HOM05D000664 ORTHO05D000491 3.4e-06 55.8 146 31.5
COL.COLO4_37345 Corchorus olitorius HOM05D000664 ORTHO05D000491 4.4e-06 55.5 138 31.2
Migut.F01252 Erythranthe guttata HOM05D000664 ORTHO05D000491 4.4e-06 55.5 74 43.2
Lsat_1_v5_gn_2_127801 Lactuca sativa HOM05D000664 ORTHO05D000491 4.4e-06 55.5 151 27.2
PSO566G0320 Papaver somniferum HOM05D000664 ORTHO05D000491 4.4e-06 55.5 153 30.1
Rhsim03G0162200 Rhododendron simsii HOM05D000664 ORTHO05D000491 4.4e-06 55.5 157 31.8
Actinidia31674 Actinidia chinensis HOM05D000664 ORTHO05D000491 5.8e-06 55.1 143 30.1
Migut.F01253 Erythranthe guttata HOM05D000664 ORTHO05D000491 5.8e-06 55.1 74 43.2
Nitab4.5_0004325g0010 Nicotiana tabacum HOM05D000664 ORTHO05D000491 5.8e-06 55.1 54 46.3
Peaxi162Scf00725g00022 Petunia axillaris HOM05D000664 ORTHO05D000491 5.8e-06 55.1 153 29.4
SGA_v2.0_scaffold136G35012 Striga asiatica HOM05D000664 ORTHO05D000491 5.8e-06 55.1 69 42.0
CAN.G231.32 Capsicum annuum HOM05D000664 ORTHO05D000491 7.6e-06 54.7 154 32.5
DCAR_018084 Daucus carota HOM05D000664 ORTHO05D000491 7.6e-06 54.7 70 45.7
Hma1.2p1_0726F.1_g208920 Hydrangea macrophylla HOM05D000664 ORTHO05D000491 7.6e-06 54.7 144 31.2
Lalb_Chr02g0157561 Lupinus albus HOM05D000664 ORTHO05D000491 7.6e-06 54.7 147 29.3
MBI05_g28548_MAGBIO Magnolia biondii HOM05D000664 ORTHO05D000491 7.6e-06 54.7 141 31.9
Peaxi162Scf00725g00025 Petunia axillaris HOM05D000664 ORTHO05D000491 7.6e-06 54.7 155 30.3
DCAR_018079 Daucus carota HOM05D000664 ORTHO05D000491 9.9e-06 54.3 71 45.1
Migut.F01251 Erythranthe guttata HOM05D000664 ORTHO05D000491 9.9e-06 54.3 74 41.9


User provided reference genes

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