Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.3e-151 539.7 275 100.0
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.5e-145 518.8 275 96.0
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 7.2e-121 437.6 266 85.7
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 4.1e-108 395.2 336 66.1
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 2.4e-100 369.4 278 72.3
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.0e-67 258.5 270 55.9
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 2.3e-66 256.5 282 55.3
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.0e-58 231.1 270 53.0
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.3e-58 230.7 247 54.7
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 1.5e-57 227.3 250 52.0
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.4e-55 220.7 284 51.4
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 2.4e-55 219.9 271 49.1
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.4e-54 216.1 271 48.0
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 5.8e-54 215.3 275 51.6
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 9.9e-54 214.5 271 48.0
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 6.4e-53 211.8 282 45.4
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.9e-52 210.3 232 52.2
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.4e-52 209.9 283 47.7
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 2.4e-52 209.9 271 49.4
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 3.2e-52 209.5 370 40.5
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 3.5e-51 206.1 255 47.8
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 4.6e-51 205.7 242 47.5
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 4.6e-51 205.7 242 47.5
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.6e-51 205.7 250 48.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.3e-50 204.1 245 48.6
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.8e-50 203.8 247 46.6
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 3.9e-50 202.6 275 44.7
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.9e-50 202.6 267 45.3
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 3.9e-50 202.6 281 46.6
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.1e-50 202.2 242 47.1
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 1.1e-49 201.1 270 48.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.5e-49 200.7 258 47.3
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 3.3e-49 199.5 236 49.6
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.6e-48 197.2 271 45.4
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 2.8e-48 196.4 166 65.7
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.7e-48 196.1 211 52.6
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 4.8e-48 195.7 240 48.8
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 1.1e-47 194.5 241 46.9
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.0e-47 191.4 258 45.3
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 2.6e-46 189.9 264 46.6
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 4.5e-46 189.1 271 43.5
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 4.5e-46 189.1 269 41.6
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 2.2e-45 186.8 314 41.4
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 3.8e-45 186.0 238 45.4
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 4.9e-45 185.7 268 39.9
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 1.1e-44 184.5 236 45.3
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.1e-44 184.5 270 47.4
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.9e-44 183.7 275 44.0
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.9e-44 183.7 275 44.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 1.9e-44 183.7 210 50.5
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 1.2e-43 181.0 256 45.3
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 2.1e-43 180.3 270 41.1
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 3.5e-43 179.5 237 45.1
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 3.5e-43 179.5 234 46.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 7.9e-43 178.3 278 42.4
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 7.9e-43 178.3 212 50.0
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.3e-42 177.6 271 42.1
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 1.3e-42 177.6 270 44.4
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.9e-42 176.0 313 38.3
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.9e-42 176.0 313 38.3
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.1e-41 174.5 324 39.8
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.9e-41 173.7 275 44.7
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 2.5e-41 173.3 269 39.4
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.5e-41 173.3 235 44.3
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 5.7e-41 172.2 259 47.1
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 5.7e-41 172.2 256 41.8
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 5.7e-41 172.2 241 44.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 7.4e-41 171.8 281 41.6
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 7.4e-41 171.8 288 41.3
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 9.6e-41 171.4 278 43.5
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 1.6e-40 170.6 275 38.9
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 4.8e-40 169.1 268 45.5
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 8.2e-40 168.3 227 47.1
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 5.3e-39 165.6 273 38.1
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 6.9e-39 165.2 275 37.5
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 6.9e-39 165.2 241 42.3
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 9.0e-39 164.9 204 48.0
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.2e-38 164.5 241 42.3
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.5e-38 164.1 373 35.4
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 5.9e-38 162.2 240 41.2
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 2.9e-37 159.8 248 41.1
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 6.5e-37 158.7 270 37.8
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 6.5e-37 158.7 398 33.2
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 8.4e-37 158.3 332 34.9
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 8.4e-37 158.3 251 43.8
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.4e-36 157.5 281 40.9
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 2.5e-36 156.8 222 47.3
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 2.5e-36 156.8 258 41.1
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 4.2e-36 156.0 200 46.5
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.6e-35 154.1 224 42.9
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 3.5e-35 152.9 285 38.6
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 7.9e-35 151.8 276 40.2
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 1.3e-34 151.0 276 38.8
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 1.8e-34 150.6 236 44.1
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 2.3e-34 150.2 277 39.0
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.9e-33 147.1 255 38.8
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 3.3e-33 146.4 299 40.1
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 4.3e-33 146.0 291 38.5
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 5.7e-33 145.6 232 40.5
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 9.7e-33 144.8 272 37.5
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 1.6e-32 144.1 288 37.2
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 2.2e-32 143.7 273 39.6
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 2.2e-32 143.7 273 39.6
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.7e-32 142.9 299 39.5
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 3.7e-32 142.9 298 39.9
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 8.2e-32 141.7 220 44.1
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.1e-31 141.4 273 39.2
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.8e-31 140.6 286 35.7
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.8e-31 140.6 168 51.2
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.4e-31 140.2 273 39.2
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 3.1e-31 139.8 270 39.3
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 5.3e-31 139.0 271 36.2
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 6.9e-31 138.7 298 38.9
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 1.2e-30 137.9 273 38.8
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 2.0e-30 137.1 213 42.3
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 3.4e-30 136.3 217 38.7
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 4.5e-30 136.0 171 44.4
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 5.0e-29 132.5 284 35.2
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 6.5e-29 132.1 211 40.3
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 2.5e-28 130.2 280 38.2
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 5.5e-28 129.0 207 41.1
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 4.6e-27 125.9 234 38.9
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 4.6e-27 125.9 185 42.7
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 7.9e-27 125.2 156 47.4
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 7.9e-27 125.2 214 38.3
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 4.3e-25 119.4 275 37.8
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 3.4e-22 109.8 279 32.6
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 1.0e-21 108.2 287 34.1
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 1.0e-21 108.2 286 36.7
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 5.0e-21 105.9 281 32.0
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 5.0e-21 105.9 265 34.7
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 8.5e-21 105.1 287 33.1
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 1.7e-16 90.9 278 30.9
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 5.3e-15 85.9 231 31.2
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.0e-14 84.0 84 51.2
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 3.5e-14 83.2 275 28.7
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 5.9e-14 82.4 86 52.3
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 7.2e-12 75.5 232 31.0
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 9.4e-12 75.1 117 41.0
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 7.5e-09 65.5 118 42.4
Hma1.2p1_0298F.1_g117400 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.1e-07 59.7 75 49.3
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.0e-06 57.4 53 52.8
Thhalv10005921m.g Eutrema salsugineum HOM05D005852 ORTHO05D006688 4.5e-06 56.2 168 31.0


User provided reference genes

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