Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G011620 Populus trichocarpa HOM05D007252 ORTHO05D009074 3.7e-28 127.5 63 100.0
Sabra08G0007100 Salix brachista HOM05D000045 ORTHO05D000067 3.8e-25 117.5 63 90.5
Ciclev10010136m.g Citrus clementina HOM05D007252 ORTHO05D009074 8.2e-20 99.8 58 81.0
Eucgr.F03517 Eucalyptus grandis HOM05D007252 ORTHO05D009074 1.8e-19 98.6 62 71.0
QL08p064685 Quercus lobata HOM05D007252 ORTHO05D009074 2.4e-19 98.2 61 77.0
Aa31LG5G12260 Aethionema arabicum HOM05D007252 ORTHO05D009074 3.1e-19 97.8 61 70.5
Cfa020240 Carpinus fangiana HOM05D007252 ORTHO05D009074 4.1e-19 97.4 60 73.3
CANSAT80G1100 Cannabis sativa HOM05D007252 ORTHO05D009074 1.5e-18 95.5 63 69.8
Gohir.D05G377900 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.5e-18 95.5 61 72.1
COL.COLO4_09763 Corchorus olitorius HOM05D007252 ORTHO05D009074 2.0e-18 95.1 60 73.3
Gorai.009G445700 Gossypium raimondii HOM05D007252 ORTHO05D009074 2.0e-18 95.1 61 70.5
Gohir.A04G010100 Gossypium hirsutum HOM05D007252 ORTHO05D009074 5.9e-18 93.6 61 70.5
Prupe.4G229900 Prunus persica HOM05D007252 ORTHO05D009074 5.9e-18 93.6 61 72.1
Sc07g0002910 Simmondsia chinensis HOM05D007252 ORTHO05D009074 5.9e-18 93.6 60 70.0
Nn7g36100 Nelumbo nucifera HOM05D002789 ORTHO05D003185 7.6e-18 93.2 57 75.4
AL7G26180 Arabidopsis lyrata HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 67.2
BcaB03g12504 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 67.2
BcaC09g50629 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 67.2
BcaC09g52252 Brassica carinata HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 67.2
A08p20750 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 67.2
C01p22730 Brassica napus HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 67.2
BolC1t02202H Brassica oleracea HOM05D007252 ORTHO05D009074 1.0e-17 92.8 61 67.2
A01p17930 Brassica napus HOM05D007252 ORTHO05D009074 1.7e-17 92.0 61 67.2
BraA01t01748Z Brassica rapa HOM05D007252 ORTHO05D009074 1.7e-17 92.0 61 67.2
Carub.0007s1418 Capsella rubella HOM05D007252 ORTHO05D009074 1.7e-17 92.0 60 68.3
HanXRQChr03g0076961 Helianthus annuus HOM05D007252 ORTHO05D009074 2.2e-17 91.7 60 66.7
Thecc.07G024200 Theobroma cacao HOM05D007252 ORTHO05D009074 2.2e-17 91.7 61 68.9
BraA08t34029Z Brassica rapa HOM05D007252 ORTHO05D009074 2.9e-17 91.3 61 65.6
CSS0032760 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 2.9e-17 91.3 59 69.5
MD11G1206600 Malus domestica HOM05D007252 ORTHO05D009074 3.8e-17 90.9 63 66.7
CSS0018987 Camellia sinensis var. sinensis HOM05D007252 ORTHO05D009074 5.0e-17 90.5 59 69.5
Ciclev10003084m.g Citrus clementina HOM05D007252 ORTHO05D009074 5.0e-17 90.5 58 74.1
Manes.03G134300 Manihot esculenta HOM05D007252 ORTHO05D009074 6.5e-17 90.1 58 74.1
Lsat_1_v5_gn_0_15441 Lactuca sativa HOM05D007252 ORTHO05D009074 8.5e-17 89.7 60 68.3
FvH4_3g23810 Fragaria vesca HOM05D007252 ORTHO05D009074 1.1e-16 89.4 61 65.6
FAN11G0552 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-16 89.4 61 65.6
FAN21G1608 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.1e-16 89.4 61 65.6
BcaC07g38242 Brassica carinata HOM05D007252 ORTHO05D009074 1.4e-16 89.0 61 65.6
C08p09910 Brassica napus HOM05D007252 ORTHO05D009074 1.4e-16 89.0 61 65.6
RcHm_v2.0_Chr5g0041991 Rosa chinensis HOM05D007252 ORTHO05D009074 1.4e-16 89.0 61 65.6
CARHR234280 Cardamine hirsuta HOM05D007252 ORTHO05D009074 3.2e-16 87.8 61 62.3
CAN.G337.42 Capsicum annuum HOM05D007252 ORTHO05D009074 4.2e-16 87.4 61 65.6
PGSC0003DMG402022195 Solanum tuberosum HOM05D007252 ORTHO05D009074 7.2e-16 86.7 61 63.9
BolC8t48668H Brassica oleracea HOM05D007252 ORTHO05D009074 1.6e-15 85.5 57 66.7
ECA240G2584 Erigeron canadensis HOM05D007252 ORTHO05D009074 4.6e-15 84.0 60 63.3
Lalb_Chr15g0081831 Lupinus albus HOM05D007252 ORTHO05D009074 4.6e-15 84.0 60 66.7
Lalb_Chr15g0081851 Lupinus albus HOM05D007252 ORTHO05D009074 4.6e-15 84.0 60 66.7
Lalb_Chr15g0081871 Lupinus albus HOM05D007252 ORTHO05D009074 4.6e-15 84.0 60 66.7
MD03G1190100 Malus domestica HOM05D007252 ORTHO05D009074 4.6e-15 84.0 63 61.9
Phvul.006G051100 Phaseolus vulgaris HOM05D007252 ORTHO05D009074 4.6e-15 84.0 60 65.0
Migut.M01689 Erythranthe guttata HOM05D007252 ORTHO05D009074 6.1e-15 83.6 61 67.2
Lalb_Chr15g0081811 Lupinus albus HOM05D007252 ORTHO05D009074 6.1e-15 83.6 60 66.7
Lj6g0008035 Lotus japonicus HOM05D007252 ORTHO05D009074 1.0e-14 82.8 60 68.3
VMungo0540G2390 Vigna mungo HOM05D007252 ORTHO05D009074 1.0e-14 82.8 60 65.0
EL10Ac4g07630 Beta vulgaris HOM05D007252 ORTHO05D009074 2.3e-14 81.6 60 58.3
AUR62015933 Chenopodium quinoa HOM05D007252 ORTHO05D009074 3.0e-14 81.3 60 60.0
Ca_20134_v3 Cicer arietinum L. HOM05D007252 ORTHO05D009074 3.0e-14 81.3 60 66.7
ECA240G2620 Erigeron canadensis HOM05D000132 ORTHO05D000058 5.1e-14 80.5 60 63.3
Glyma.18G085000 Glycine max HOM05D007252 ORTHO05D009074 1.1e-13 79.3 60 63.3
AUR62040676 Chenopodium quinoa HOM05D007252 ORTHO05D009074 4.3e-13 77.4 60 56.7
SalBow8G3523 Salvia bowleyana HOM05D007252 ORTHO05D009074 4.3e-13 77.4 61 59.0
Actinidia39080 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.3e-12 75.9 59 57.6
Psat3g156800 Pisum sativum HOM05D007252 ORTHO05D009074 1.6e-12 75.5 57 63.2
HPP92_012649 Vanilla planifolia HOM05D007252 ORTHO05D009074 4.8e-12 73.9 60 60.0
TPR.G23623 Trifolium pratense HOM05D007252 ORTHO05D009074 8.2e-12 73.2 60 60.0
SHI26548 Sapria himalayana HOM05D007252 ORTHO05D009074 1.8e-11 72.0 50 64.0
TAR633G2179 Trochodendron aralioides HOM05D002789 ORTHO05D003185 2.4e-11 71.6 50 66.0
Nn2g15499 Nelumbo nucifera HOM05D007252 ORTHO05D009074 1.5e-10 68.9 58 53.4
Cpa.g.c35309 Carica papaya HOM05D007252 ORTHO05D009074 2.0e-10 68.6 47 68.1
HPP92_005058 Vanilla planifolia HOM05D007563 ORTHO05D009546 4.5e-10 67.4 62 53.2
PGR142G0020 Punica granatum HOM05D007252 ORTHO05D009074 5.9e-10 67.0 53 54.7
Medtr3g055700 Medicago truncatula HOM05D007252 ORTHO05D009074 7.7e-10 66.6 57 57.9
Actinidia07909 Actinidia chinensis HOM05D007252 ORTHO05D009074 1.3e-09 65.9 53 56.6
Aqoxy6G01551 Aquilegia oxysepala HOM05D007252 ORTHO05D009074 1.3e-09 65.9 58 56.9
Cfa016655 Carpinus fangiana HOM05D007252 ORTHO05D009074 1.7e-09 65.5 53 50.9
Cpa.g.sc104.83 Carica papaya HOM05D007252 ORTHO05D009074 3.8e-09 64.3 53 52.8
CiPaw.10G013800 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.8e-09 64.3 53 50.9
TWI74G0966 Tripterygium wilfordii HOM05D007252 ORTHO05D009074 5.0e-09 63.9 53 54.7
FAN17G0382 Fragaria x ananassa HOM05D007252 ORTHO05D009074 1.4e-08 62.4 46 58.7
AT3G11591 Arabidopsis thaliana HOM05D007252 ORTHO05D009074 1.9e-08 62.0 55 45.5
Manes.09G050900 Manihot esculenta HOM05D007252 ORTHO05D009074 4.2e-08 60.8 53 50.9
MD14G1032500 Malus domestica HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 50.9
Potri.006G207600 Populus trichocarpa HOM05D007252 ORTHO05D009074 5.5e-08 60.5 53 50.9
BcaC09g48182 Brassica carinata HOM05D007252 ORTHO05D009074 1.6e-07 58.9 55 43.6
BolC1t05305H Brassica oleracea HOM05D007252 ORTHO05D009074 1.6e-07 58.9 55 43.6
Lj5g0009107 Lotus japonicus HOM05D007252 ORTHO05D009074 1.6e-07 58.9 56 46.4
BNapus_Darmor_BZH_scaffold_145p00090 Brassica napus HOM05D007252 ORTHO05D009074 2.7e-07 58.2 55 43.6
BraA01t04175Z Brassica rapa HOM05D007252 ORTHO05D009074 2.7e-07 58.2 55 43.6
BcaB04g21127 Brassica carinata HOM05D007252 ORTHO05D009074 3.6e-07 57.8 55 43.6
CiPaw.10G013500 Carya illinoinensis HOM05D007252 ORTHO05D009074 3.6e-07 57.8 53 45.3
CARHR049680 Cardamine hirsuta HOM05D007252 ORTHO05D009074 4.6e-07 57.4 43 58.1
Migut.L01811 Erythranthe guttata HOM05D007252 ORTHO05D009074 4.6e-07 57.4 53 50.9
CARHR086150 Cardamine hirsuta HOM05D007252 ORTHO05D009074 6.1e-07 57.0 55 43.6
Gohir.A11G318300 Gossypium hirsutum HOM05D007252 ORTHO05D009074 6.1e-07 57.0 53 47.2
Medtr1g058260 Medicago truncatula HOM05D007252 ORTHO05D009074 6.1e-07 57.0 56 42.9
Prupe.7G100100 Prunus persica HOM05D007252 ORTHO05D009074 1.0e-06 56.2 53 47.2
Thecc.05G097600 Theobroma cacao HOM05D007252 ORTHO05D009074 1.0e-06 56.2 53 49.1
Gohir.D11G337600 Gossypium hirsutum HOM05D007252 ORTHO05D009074 1.8e-06 55.5 53 45.3
Gorai.007G367600 Gossypium raimondii HOM05D007252 ORTHO05D009074 1.8e-06 55.5 53 45.3
Duzib093G1663 Durio zibethinus HOM05D007252 ORTHO05D009074 2.3e-06 55.1 53 47.2
Sed0008758 Sechium edule HOM05D007252 ORTHO05D009074 2.3e-06 55.1 61 42.6
COL.COLO4_29654 Corchorus olitorius HOM05D007252 ORTHO05D009074 3.0e-06 54.7 53 47.2
DCAR_020730 Daucus carota HOM05D006095 ORTHO05D001225 3.9e-06 54.3 43 55.8
Sc20g0006500 Simmondsia chinensis HOM05D007252 ORTHO05D009074 8.8e-06 53.1 53 47.2


User provided reference genes

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