Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G011461 Populus trichocarpa HOM05D000251 ORTHO05D332410 1.4e-53 212.6 101 100.0
Potri.010G246200 Populus trichocarpa HOM05D000251 ORTHO05D002506 1.2e-33 146.4 112 67.9
Sabra08G0009100 Salix brachista HOM05D000251 ORTHO05D002506 1.8e-32 142.5 111 67.6
Potri.008G014600 Populus trichocarpa HOM05D000251 ORTHO05D002506 3.0e-32 141.7 111 67.6
CiPaw.14G037400 Carya illinoinensis HOM05D000251 ORTHO05D002506 4.3e-23 111.3 109 53.2
CiPaw.13G046900 Carya illinoinensis HOM05D000251 ORTHO05D002506 7.4e-23 110.5 109 50.5
Atru.chr12.1181 Acer truncatum HOM05D000251 ORTHO05D002506 3.7e-22 108.2 109 53.2
Duzib114G0038 Durio zibethinus HOM05D000251 ORTHO05D002506 3.7e-22 108.2 109 52.3
arahy.Tifrunner.gnm1.ann1.UXU7CF Arachis hypogaea HOM05D000251 ORTHO05D002506 4.8e-22 107.8 110 56.4
Dinv23910 Davidia involucrata HOM05D000251 ORTHO05D002506 4.8e-22 107.8 109 47.7
Hma1.2p1_0892F.1_g233300 Hydrangea macrophylla HOM05D000251 ORTHO05D002506 8.2e-22 107.1 109 47.7
Lj7A494T49 Lonicera japonica HOM05D000251 ORTHO05D002506 1.4e-21 106.3 109 48.6
MBI13_g13898_MAGBIO Magnolia biondii HOM05D000251 ORTHO05D002506 1.8e-21 105.9 110 50.9
Actinidia18367 Actinidia chinensis HOM05D000251 ORTHO05D002506 2.4e-21 105.5 109 47.7
arahy.Tifrunner.gnm1.ann1.F3LGCQ Arachis hypogaea HOM05D000251 ORTHO05D002506 2.4e-21 105.5 110 55.5
RcHm_v2.0_Chr1g0331371 Rosa chinensis HOM05D000251 ORTHO05D002506 2.4e-21 105.5 109 52.3
TWI38G0093 Tripterygium wilfordii HOM05D000251 ORTHO05D002506 3.1e-21 105.1 109 52.3
Actinidia12132 Actinidia chinensis HOM05D000251 ORTHO05D002506 4.1e-21 104.8 109 47.7
ECA238G3148 Erigeron canadensis HOM05D000251 ORTHO05D002506 6.9e-21 104.0 103 52.4
Duzib128G1028 Durio zibethinus HOM05D000251 ORTHO05D002506 9.1e-21 103.6 109 50.5
Glyma.08G228800 Glycine max HOM05D000251 ORTHO05D002506 9.1e-21 103.6 105 52.4
GSVIVG01027207001 Vitis vinifera HOM05D000251 ORTHO05D002506 9.1e-21 103.6 108 48.1
COL.COLO4_20815 Corchorus olitorius HOM05D000251 ORTHO05D002506 1.2e-20 103.2 109 48.6
Lsat_1_v5_gn_5_37840 Lactuca sativa HOM05D000251 ORTHO05D002506 1.2e-20 103.2 92 56.5
HanXRQChr12g0379691 Helianthus annuus HOM05D000251 ORTHO05D002506 2.0e-20 102.4 104 51.9
Nitab4.5_0005056g0020 Nicotiana tabacum HOM05D000251 ORTHO05D002506 2.0e-20 102.4 109 49.5
vmacro13822 Vaccinium macrocarpon HOM05D000251 ORTHO05D002506 2.0e-20 102.4 109 47.7
Cc02_g32110 Coffea canephora HOM05D000251 ORTHO05D002506 4.5e-20 101.3 109 47.7
FvH4_7g05080 Fragaria vesca HOM05D000251 ORTHO05D002506 4.5e-20 101.3 109 49.5
FAN06G3365 Fragaria x ananassa HOM05D000251 ORTHO05D002506 4.5e-20 101.3 109 49.5
Nitab4.5_0001611g0040 Nicotiana tabacum HOM05D000251 ORTHO05D002506 5.9e-20 100.9 109 48.6
Gohir.D10G201500 Gossypium hirsutum HOM05D000251 ORTHO05D002506 7.7e-20 100.5 109 49.5
Gorai.011G226200 Gossypium raimondii HOM05D000251 ORTHO05D002506 7.7e-20 100.5 109 49.5
FAN01G1409 Fragaria x ananassa HOM05D000251 ORTHO05D002506 1.0e-19 100.1 109 48.6
Glyma.15G215400 Glycine max HOM05D000251 ORTHO05D002506 1.0e-19 100.1 109 50.5
Peaxi162Scf00647g00321 Petunia axillaris HOM05D000251 ORTHO05D002506 1.3e-19 99.8 109 47.7
Eucgr.G02649 Eucalyptus grandis HOM05D000251 ORTHO05D002506 1.7e-19 99.4 107 46.7
Nn2g14579 Nelumbo nucifera HOM05D000251 ORTHO05D002506 1.7e-19 99.4 109 49.5
PGR142G2313 Punica granatum HOM05D000251 ORTHO05D002506 2.2e-19 99.0 108 50.0
Rhsim07G0074900 Rhododendron simsii HOM05D000251 ORTHO05D002506 2.2e-19 99.0 110 46.4
PGSC0003DMG400027523 Solanum tuberosum HOM05D000251 ORTHO05D002506 2.9e-19 98.6 109 49.5
Haze_03410 Corylus avellana HOM05D000251 ORTHO05D002506 3.8e-19 98.2 108 44.4
Phvul.003G275700 Phaseolus vulgaris HOM05D000251 ORTHO05D002506 5.0e-19 97.8 105 50.5
Oeu013058.1 Olea europaea HOM05D000251 ORTHO05D002506 6.5e-19 97.4 109 47.7
Gohir.A10G194400 Gossypium hirsutum HOM05D000251 ORTHO05D002506 8.5e-19 97.1 109 47.7
Gohir.D04G019400 Gossypium hirsutum HOM05D000251 ORTHO05D002506 8.5e-19 97.1 106 50.9
Gorai.012G023200 Gossypium raimondii HOM05D000251 ORTHO05D002506 8.5e-19 97.1 106 50.9
Gohir.A05G395600 Gossypium hirsutum HOM05D000251 ORTHO05D002506 1.1e-18 96.7 109 48.6
Ciclev10014078m.g Citrus clementina HOM05D000251 ORTHO05D002506 1.4e-18 96.3 109 46.8
Prupe.2G061800 Prunus persica HOM05D000251 ORTHO05D002506 1.4e-18 96.3 109 45.0
Solyc01g096930.3 Solanum lycopersicum HOM05D000251 ORTHO05D002506 1.4e-18 96.3 109 47.7
CSS0038713 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D002506 1.9e-18 95.9 109 45.9
Cfa010458 Carpinus fangiana HOM05D000251 ORTHO05D002506 1.9e-18 95.9 108 44.4
ECA246G5198 Erigeron canadensis HOM05D000251 ORTHO05D002506 1.9e-18 95.9 103 50.5
Lalb_Chr03g0032331 Lupinus albus HOM05D000251 ORTHO05D002506 1.9e-18 95.9 109 46.8
Sopen01g040640 Solanum pennellii HOM05D000251 ORTHO05D002506 1.9e-18 95.9 109 47.7
BcaC06g32202 Brassica carinata HOM05D000251 ORTHO05D002506 2.5e-18 95.5 109 46.8
CSS0048074 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D002506 2.5e-18 95.5 109 45.9
CAN.G134.57 Capsicum annuum HOM05D000251 ORTHO05D002506 2.5e-18 95.5 109 46.8
A10p31200 Brassica napus HOM05D000251 ORTHO05D002506 3.2e-18 95.1 109 46.8
C09p71820 Brassica napus HOM05D000251 ORTHO05D002506 3.2e-18 95.1 109 46.8
BolC9t59931H Brassica oleracea HOM05D000251 ORTHO05D002506 3.2e-18 95.1 109 46.8
BraA10t45164Z Brassica rapa HOM05D000251 ORTHO05D002506 3.2e-18 95.1 109 46.8
Lj3g0015673 Lotus japonicus HOM05D000251 ORTHO05D002506 3.2e-18 95.1 104 50.0
Sc06g0002850 Simmondsia chinensis HOM05D000251 ORTHO05D002506 3.2e-18 95.1 110 45.5
TAR623G0778 Trochodendron aralioides HOM05D000251 ORTHO05D002506 4.2e-18 94.7 108 45.4
Oeu058673.1 Olea europaea HOM05D000251 ORTHO05D002506 7.2e-18 94.0 109 46.8
Sp6g37870 Schrenkiella parvula HOM05D000251 ORTHO05D002506 7.2e-18 94.0 109 45.9
SGA_v2.0_scaffold196G40985 Striga asiatica HOM05D000251 ORTHO05D002506 7.2e-18 94.0 112 43.8
TAR636G3260 Trochodendron aralioides HOM05D000251 ORTHO05D002506 7.2e-18 94.0 108 47.2
MD02G1263000 Malus domestica HOM05D000251 ORTHO05D002506 9.4e-18 93.6 109 45.9
Lsat_1_v5_gn_2_67020 Lactuca sativa HOM05D000251 ORTHO05D002506 1.2e-17 93.2 92 48.9
Potri.008G014400 Populus trichocarpa HOM05D000251 ORTHO05D002506 1.2e-17 93.2 109 45.0
Hund22249 Selenicereus undatus HOM05D000251 ORTHO05D002506 1.6e-17 92.8 106 44.3
Thhalv10012494m.g Eutrema salsugineum HOM05D000251 ORTHO05D002506 2.1e-17 92.4 109 45.0
AL6G14630 Arabidopsis lyrata HOM05D000251 ORTHO05D002506 2.7e-17 92.0 109 45.9
CANSAT56G2332 Cannabis sativa HOM05D000251 ORTHO05D002506 2.7e-17 92.0 106 45.3
HanXRQChr09g0254641 Helianthus annuus HOM05D000251 ORTHO05D002506 2.7e-17 92.0 104 48.1
QL04p050260 Quercus lobata HOM05D000251 ORTHO05D002506 2.7e-17 92.0 108 42.6
QL04p050312 Quercus lobata HOM05D000251 ORTHO05D002506 2.7e-17 92.0 108 42.6
AT5G04930 Arabidopsis thaliana HOM05D000251 ORTHO05D002506 4.7e-17 91.3 109 45.9
HanXRQChr14g0445761 Helianthus annuus HOM05D000251 ORTHO05D002506 4.7e-17 91.3 103 46.6
Glyma.04G129200 Glycine max HOM05D000251 ORTHO05D002506 6.1e-17 90.9 107 52.3
Sabra08G0009000 Salix brachista HOM05D000251 ORTHO05D002506 6.1e-17 90.9 109 45.9
unitig_746.g26850 Utricularia gibba HOM05D000251 ORTHO05D002506 6.1e-17 90.9 103 44.7
Cpa.g.sc54.46 Carica papaya HOM05D000251 ORTHO05D002506 7.9e-17 90.5 105 43.8
Aqoxy2G00009 Aquilegia oxysepala HOM05D000251 ORTHO05D002506 1.0e-16 90.1 105 44.8
Phvul.005G011100 Phaseolus vulgaris HOM05D000251 ORTHO05D002506 1.0e-16 90.1 112 49.1
SalBow4G2905 Salvia bowleyana HOM05D000251 ORTHO05D002506 1.0e-16 90.1 108 44.4
Carub.0006s0387 Capsella rubella HOM05D000251 ORTHO05D002506 1.4e-16 89.7 109 43.1
ClCG08G008510 Citrullus lanatus HOM05D000251 ORTHO05D002506 1.8e-16 89.4 110 43.6
Migut.B01145 Erythranthe guttata HOM05D000251 ORTHO05D002506 1.8e-16 89.4 109 41.3
unitig_747.g21368 Utricularia gibba HOM05D000251 ORTHO05D002506 1.8e-16 89.4 102 46.1
BcaNung04446 Brassica carinata HOM05D000251 ORTHO05D002506 2.3e-16 89.0 109 43.1
Glyma.06G315100 Glycine max HOM05D000251 ORTHO05D002506 2.3e-16 89.0 112 50.0
Lj3g0003296 Lotus japonicus HOM05D000251 ORTHO05D002506 3.0e-16 88.6 112 46.4
Lalb_Chr19g0132501 Lupinus albus HOM05D000251 ORTHO05D002506 3.0e-16 88.6 91 49.5
Medtr3g007240 Medicago truncatula HOM05D000251 ORTHO05D002506 3.9e-16 88.2 106 49.1
Medtr8g044210 Medicago truncatula HOM05D000251 ORTHO05D002506 3.9e-16 88.2 89 52.8
BolC3t12784H Brassica oleracea HOM05D000251 ORTHO05D002506 6.7e-16 87.4 110 42.7
Ca_12169_v3 Cicer arietinum L. HOM05D000251 ORTHO05D002506 6.7e-16 87.4 89 52.8
Hund22250 Selenicereus undatus HOM05D000251 ORTHO05D002506 8.8e-16 87.0 106 44.3
BcaB01g05928 Brassica carinata HOM05D000251 ORTHO05D002506 1.5e-15 86.3 110 42.7
A03p01970 Brassica napus HOM05D000251 ORTHO05D002506 1.5e-15 86.3 110 42.7
BraA03t09565Z Brassica rapa HOM05D000251 ORTHO05D002506 1.5e-15 86.3 110 42.7
Aa31LG11G5770 Aethionema arabicum HOM05D000251 ORTHO05D002506 2.0e-15 85.9 105 44.8
MD07G1054900 Malus domestica HOM05D000251 ORTHO05D002506 2.0e-15 85.9 91 48.4
Migut.O00434 Erythranthe guttata HOM05D000251 ORTHO05D002506 2.6e-15 85.5 105 43.8
TPR.G35750 Trifolium pratense HOM05D000251 ORTHO05D002506 2.6e-15 85.5 88 52.3
MSTRG.20475 Avicennia marina HOM05D000251 ORTHO05D002506 5.7e-15 84.3 109 42.2
AUR62014302 Chenopodium quinoa HOM05D000251 ORTHO05D002506 5.7e-15 84.3 102 43.1
C03p02330 Brassica napus HOM05D000251 ORTHO05D002506 9.7e-15 83.6 109 42.2
AUR62034096 Chenopodium quinoa HOM05D000251 ORTHO05D002506 1.3e-14 83.2 102 43.1
unitig_736.g22742 Utricularia gibba HOM05D000251 ORTHO05D002506 1.3e-14 83.2 108 41.7
Sed0007573 Sechium edule HOM05D000251 ORTHO05D002506 1.7e-14 82.8 95 42.1
Ca_14030_v3 Cicer arietinum L. HOM05D000251 ORTHO05D002506 3.7e-14 81.6 106 45.3
Lalb_Chr15g0079341 Lupinus albus HOM05D000251 ORTHO05D002506 3.7e-14 81.6 88 51.1
THA.LOC104816484 Tarenaya hassleriana HOM05D000251 ORTHO05D002506 3.7e-14 81.6 103 43.7
Zm00001eb015510 Zea mays HOM05D000251 ORTHO05D002506 6.3e-14 80.9 107 40.2
CsaV3_6G004500 Cucumis sativus L. HOM05D000251 ORTHO05D002506 1.1e-13 80.1 106 44.3
ATR1154G015 Amborella trichopoda HOM05D000251 ORTHO05D002506 1.8e-13 79.3 109 38.5
PSO675G2594 Papaver somniferum HOM05D000251 ORTHO05D002506 1.8e-13 79.3 109 42.2
Os03g0326000 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D002506 2.4e-13 79.0 107 37.4
TPR.G25493 Trifolium pratense HOM05D000251 ORTHO05D002506 2.4e-13 79.0 66 59.1
CDE02G2408 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 7.0e-13 77.4 89 42.7
FAN03G3300 Fragaria x ananassa HOM05D000251 ORTHO05D002506 7.0e-13 77.4 82 46.3
Sed0012070 Sechium edule HOM05D000251 ORTHO05D002506 7.0e-13 77.4 110 40.0
arahy.Tifrunner.gnm1.ann1.C32TMJ Arachis hypogaea HOM05D000251 ORTHO05D002506 9.1e-13 77.0 88 48.9
PSO541G3387 Papaver somniferum HOM05D000251 ORTHO05D002506 9.1e-13 77.0 109 41.3
Sed0023182 Sechium edule HOM05D000251 ORTHO05D002506 9.1e-13 77.0 106 40.6
CDE04G0082 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 3.5e-12 75.1 89 44.9
SHI21248 Sapria himalayana HOM05D000251 ORTHO05D002506 4.5e-12 74.7 88 43.2
Os01g0277600 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D002506 2.2e-11 72.4 108 38.0
Zm00001eb128940 Zea mays HOM05D000251 ORTHO05D002506 2.2e-11 72.4 92 41.3
Migut.N01881 Erythranthe guttata HOM05D000251 ORTHO05D002506 5.0e-11 71.2 64 50.0
EL10Ac4g08768 Beta vulgaris HOM05D000251 ORTHO05D002506 1.5e-10 69.7 106 39.6
DCAR_006627 Daucus carota HOM05D000251 ORTHO05D002506 1.6e-09 66.2 99 40.4
Sed0020391 Sechium edule HOM05D000251 ORTHO05D002506 3.0e-08 62.0 90 37.8
arahy.Tifrunner.gnm1.ann1.BQF9AX Arachis hypogaea HOM05D000251 ORTHO05D002506 6.7e-08 60.8 88 44.3
ClCG04G006340 Citrullus lanatus HOM05D000251 ORTHO05D002506 1.1e-07 60.1 87 37.9
MELO3C025224.2 Cucumis melo HOM05D000251 ORTHO05D002506 1.1e-07 60.1 87 37.9
CsaV3_4G027210 Cucumis sativus L. HOM05D000251 ORTHO05D002506 1.1e-07 60.1 87 37.9
FAN02G0146 Fragaria x ananassa HOM05D000251 ORTHO05D002506 1.5e-07 59.7 87 39.1
Gohir.A02G002900 Gossypium hirsutum HOM05D000251 ORTHO05D002506 2.0e-07 59.3 87 39.1
Gohir.D02G003300 Gossypium hirsutum HOM05D000251 ORTHO05D002506 2.0e-07 59.3 87 39.1
Gorai.005G003800 Gossypium raimondii HOM05D000251 ORTHO05D002506 2.0e-07 59.3 87 39.1
Sed0025287 Sechium edule HOM05D000251 ORTHO05D002506 2.0e-07 59.3 87 36.8
FvH4_6g09700 Fragaria vesca HOM05D000251 ORTHO05D002506 2.6e-07 58.9 87 39.1
FAN05G4440 Fragaria x ananassa HOM05D000251 ORTHO05D002506 2.6e-07 58.9 87 39.1
FAN09G0243 Fragaria x ananassa HOM05D000251 ORTHO05D002506 2.6e-07 58.9 87 39.1
FAN14G2388 Fragaria x ananassa HOM05D000251 ORTHO05D002506 2.6e-07 58.9 87 39.1
TWI53G0402 Tripterygium wilfordii HOM05D000251 ORTHO05D002506 2.6e-07 58.9 87 39.1
Nn2g10274 Nelumbo nucifera HOM05D000251 ORTHO05D002506 3.3e-07 58.5 87 40.2
Zm00001eb395180 Zea mays HOM05D000251 ORTHO05D002506 3.3e-07 58.5 92 38.0
Aqoxy4G03273 Aquilegia oxysepala HOM05D000251 ORTHO05D002506 4.4e-07 58.2 87 37.9
EL10Ac7g17112 Beta vulgaris HOM05D000251 ORTHO05D002506 4.4e-07 58.2 88 37.5
Ciclev10010927m.g Citrus clementina HOM05D000251 ORTHO05D002506 5.7e-07 57.8 87 37.9
Thecc.04G150400 Theobroma cacao HOM05D000251 ORTHO05D002506 5.7e-07 57.8 87 37.9
Phvul.008G081700 Phaseolus vulgaris HOM05D000251 ORTHO05D002506 7.5e-07 57.4 87 41.4
Prupe.6G295200 Prunus persica HOM05D000251 ORTHO05D002506 7.5e-07 57.4 87 36.8
VMungo0251G0800 Vigna mungo HOM05D000251 ORTHO05D002506 7.5e-07 57.4 43 55.8
arahy.Tifrunner.gnm1.ann1.CUVI3A Arachis hypogaea HOM05D000251 ORTHO05D002506 9.7e-07 57.0 87 39.1
arahy.Tifrunner.gnm1.ann1.HQ8SVE Arachis hypogaea HOM05D000251 ORTHO05D002506 9.7e-07 57.0 87 39.1
Duzib151G1098 Durio zibethinus HOM05D000251 ORTHO05D002506 9.7e-07 57.0 87 37.9
Eucgr.K01290 Eucalyptus grandis HOM05D000251 ORTHO05D002506 9.7e-07 57.0 87 36.8
COL.COLO4_07827 Corchorus olitorius HOM05D000251 ORTHO05D002506 1.3e-06 56.6 88 36.4
Glyma.09G273900 Glycine max HOM05D000251 ORTHO05D002506 1.3e-06 56.6 87 39.1
Lalb_Chr01g0023821 Lupinus albus HOM05D000251 ORTHO05D002506 1.3e-06 56.6 87 37.9
HPP92_014259 Vanilla planifolia HOM05D000251 ORTHO05D002506 1.3e-06 56.6 87 37.9
Medtr7g073480 Medicago truncatula HOM05D000251 ORTHO05D002506 1.7e-06 56.2 87 39.1
Psat3g119960 Pisum sativum HOM05D000251 ORTHO05D002506 1.7e-06 56.2 87 37.9
Duzib268G1376 Durio zibethinus HOM05D000251 ORTHO05D002506 2.2e-06 55.8 87 35.6
Lalb_Chr07g0195721 Lupinus albus HOM05D000251 ORTHO05D002506 2.2e-06 55.8 87 35.6
CDE04G2882 Ceratophyllum demersum HOM05D000251 ORTHO05D002506 2.8e-06 55.5 87 37.9
Ca_07766_v3 Cicer arietinum L. HOM05D000251 ORTHO05D002506 2.8e-06 55.5 87 39.1
VMungo1383G0856 Vigna mungo HOM05D000251 ORTHO05D002506 2.8e-06 55.5 87 37.9
DCAR_015332 Daucus carota HOM05D000251 ORTHO05D002506 3.7e-06 55.1 97 37.1
Glyma.18G213100 Glycine max HOM05D000251 ORTHO05D002506 3.7e-06 55.1 87 37.9
CiPaw.10G165300 Carya illinoinensis HOM05D000251 ORTHO05D002506 4.8e-06 54.7 87 36.8
MD04G1175700 Malus domestica HOM05D000251 ORTHO05D002506 4.8e-06 54.7 87 34.5
RcHm_v2.0_Chr3g0460341 Rosa chinensis HOM05D000251 ORTHO05D002506 4.8e-06 54.7 87 35.6
TPR.G31253 Trifolium pratense HOM05D000251 ORTHO05D002506 4.8e-06 54.7 87 37.9
Lj1g0016921 Lotus japonicus HOM05D000251 ORTHO05D002506 6.3e-06 54.3 87 36.8
Os03g0334700 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D002506 6.3e-06 54.3 87 36.8


User provided reference genes

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