Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G010900 Populus trichocarpa HOM05D003737 ORTHO05D004640 4.5e-240 834.3 468 100.0
Sabra08G0006600 Salix brachista HOM05D003737 ORTHO05D004640 3.2e-201 705.3 468 80.1
Potri.010G247900 Populus trichocarpa HOM05D003737 ORTHO05D004640 5.2e-196 688.0 469 84.6
Sabra10G0193400 Salix brachista HOM05D003737 ORTHO05D004640 9.2e-193 677.2 468 82.7
Manes.05G191000 Manihot esculenta HOM05D003737 ORTHO05D004640 8.7e-159 564.3 475 63.4
ClCG08G008580 Citrullus lanatus HOM05D003737 ORTHO05D004640 6.5e-146 521.5 475 58.9
MELO3C019928.2 Cucumis melo HOM05D003737 ORTHO05D004640 2.5e-145 519.6 475 58.7
CsaV3_6G004570 Cucumis sativus L. HOM05D003737 ORTHO05D004640 3.0e-143 512.7 476 58.2
Glyma.15G223100 Glycine max HOM05D003737 ORTHO05D004640 1.1e-140 504.2 472 57.2
COL.COLO4_05028 Corchorus olitorius HOM05D003737 ORTHO05D004640 6.9e-140 501.5 474 56.3
Atru.chr12.1119 Acer truncatum HOM05D003737 ORTHO05D004640 1.5e-139 500.4 468 57.7
VMungo0647G1094 Vigna mungo HOM05D003737 ORTHO05D004640 2.6e-139 499.6 473 57.7
Cfa010430 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.3e-138 497.3 475 56.8
Eucgr.J00319 Eucalyptus grandis HOM05D003737 ORTHO05D004640 1.3e-138 497.3 470 58.1
Sed0018433 Sechium edule HOM05D003737 ORTHO05D004640 1.7e-138 496.9 470 56.0
Thecc.10G131100 Theobroma cacao HOM05D003737 ORTHO05D004640 2.2e-138 496.5 473 56.0
Duzib106G0442 Durio zibethinus HOM05D003737 ORTHO05D004640 5.0e-138 495.4 477 56.0
Glyma.13G185300 Glycine max HOM05D003737 ORTHO05D004640 6.5e-138 495.0 474 56.5
Phvul.011G188500 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.9e-137 493.4 473 56.4
MD02G1266700 Malus domestica HOM05D003737 ORTHO05D004640 1.2e-136 490.7 474 56.3
Sed0006452 Sechium edule HOM05D003737 ORTHO05D004640 2.7e-136 489.6 469 56.3
Prupe.2G056900 Prunus persica HOM05D003737 ORTHO05D004640 3.6e-136 489.2 475 57.1
Gohir.D06G180700 Gossypium hirsutum HOM05D003737 ORTHO05D004640 4.6e-136 488.8 473 56.4
Gorai.010G212200 Gossypium raimondii HOM05D003737 ORTHO05D004640 7.9e-136 488.0 473 56.4
Dinv20457 Davidia involucrata HOM05D003737 ORTHO05D004640 3.9e-135 485.7 472 59.3
Duzib128G0945 Durio zibethinus HOM05D003737 ORTHO05D004640 5.1e-135 485.3 476 55.7
Lj3g0019804 Lotus japonicus HOM05D003737 ORTHO05D004640 6.7e-135 485.0 466 56.2
Cpa.g.sc33.135 Carica papaya HOM05D003737 ORTHO05D004640 1.1e-134 484.2 472 56.4
Gohir.D04G017900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 1.5e-134 483.8 473 55.6
Gorai.012G020700 Gossypium raimondii HOM05D003737 ORTHO05D004640 1.5e-134 483.8 473 55.4
Gohir.A06G171900 Gossypium hirsutum HOM05D003737 ORTHO05D004640 2.0e-134 483.4 473 56.9
MD07G1053000 Malus domestica HOM05D003737 ORTHO05D004640 2.5e-134 483.0 474 56.1
CiPaw.13G048500 Carya illinoinensis HOM05D003737 ORTHO05D004640 4.3e-134 482.3 478 55.4
TWI34G0525 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 4.3e-134 482.3 466 56.9
CSS0038854 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.5e-131 472.2 473 54.1
CSS0046027 Camellia sinensis var. sinensis HOM05D003737 ORTHO05D004640 4.5e-131 472.2 473 54.1
Gohir.A05G398100 Gossypium hirsutum HOM05D003737 ORTHO05D004640 5.9e-131 471.9 472 54.4
TWI32G0890 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.7e-130 470.3 467 55.7
Psat4g141920 Pisum sativum HOM05D003737 ORTHO05D004640 8.5e-130 468.0 476 55.0
QL04p051647 Quercus lobata HOM05D003737 ORTHO05D004640 2.5e-129 466.5 478 56.3
Medtr8g043510 Medicago truncatula HOM05D003737 ORTHO05D004640 2.1e-128 463.4 469 55.9
PGR044G1985 Punica granatum HOM05D003737 ORTHO05D004640 4.7e-128 462.2 471 54.4
Sc09g0004980 Simmondsia chinensis HOM05D003737 ORTHO05D004640 7.9e-128 461.5 475 53.5
CANSAT78G1307 Cannabis sativa HOM05D003737 ORTHO05D004640 8.8e-127 458.0 477 53.2
Hma1.2p1_0233F.1_g098040 Hydrangea macrophylla HOM05D003737 ORTHO05D004640 5.7e-126 455.3 470 53.4
TAR633G0465 Trochodendron aralioides HOM05D003737 ORTHO05D004640 9.7e-126 454.5 483 52.2
CiPaw.14G038200 Carya illinoinensis HOM05D003737 ORTHO05D004640 1.7e-125 453.8 473 53.5
Lalb_Chr01g0007591 Lupinus albus HOM05D003737 ORTHO05D004640 2.8e-125 453.0 476 52.5
CANSAT56G0630 Cannabis sativa HOM05D003737 ORTHO05D004640 6.3e-125 451.8 473 52.6
Haze_03384 Corylus avellana HOM05D003737 ORTHO05D004640 4.1e-124 449.1 597 44.7
Lj9C660G5 Lonicera japonica HOM05D003737 ORTHO05D004640 7.7e-123 444.9 476 52.1
Actinidia12270 Actinidia chinensis HOM05D003737 ORTHO05D004640 8.5e-122 441.4 480 51.9
Actinidia31420 Actinidia chinensis HOM05D003737 ORTHO05D004640 1.1e-121 441.0 477 52.6
TAR636G0393 Trochodendron aralioides HOM05D003737 ORTHO05D004640 1.9e-121 440.3 484 51.0
Lalb_Chr03g0032471 Lupinus albus HOM05D003737 ORTHO05D004640 1.2e-120 437.6 422 54.3
RcHm_v2.0_Chr1g0330551 Rosa chinensis HOM05D003737 ORTHO05D004640 2.0e-115 420.2 472 50.4
TWI63G1132 Tripterygium wilfordii HOM05D003737 ORTHO05D004640 1.3e-114 417.5 437 54.5
vmacro13791 Vaccinium macrocarpon HOM05D003737 ORTHO05D004640 6.5e-114 415.2 545 46.1
Duzib128G0026 Durio zibethinus HOM05D003737 ORTHO05D004640 1.9e-113 413.7 399 55.4
Rhsim07G0072700 Rhododendron simsii HOM05D003737 ORTHO05D004640 4.2e-113 412.5 473 50.7
TPR.G25035 Trifolium pratense HOM05D003737 ORTHO05D004640 5.5e-113 412.1 350 60.6
Hund06832 Selenicereus undatus HOM05D003737 ORTHO05D004640 9.4e-113 411.4 501 47.1
FvH4_7g04870 Fragaria vesca HOM05D003737 ORTHO05D004640 1.8e-111 407.1 472 48.9
MBI19_g24737_MAGBIO Magnolia biondii HOM05D003737 ORTHO05D004640 5.2e-111 405.6 416 50.7
FAN06G1525 Fragaria x ananassa HOM05D003737 ORTHO05D004640 6.8e-111 405.2 472 48.7
EL10Ac4g08805 Beta vulgaris HOM05D003737 ORTHO05D004640 2.2e-109 400.2 461 50.1
FAN10G1609 Fragaria x ananassa HOM05D003737 ORTHO05D004640 2.2e-109 400.2 469 48.6
PSO675G8349 Papaver somniferum HOM05D003737 ORTHO05D004640 6.3e-109 398.7 422 53.3
arahy.Tifrunner.gnm1.ann1.3J71J7 Arachis hypogaea HOM05D003737 ORTHO05D004640 5.4e-108 395.6 421 50.8
C09p71760 Brassica napus HOM05D003737 ORTHO05D004081 5.4e-108 395.6 382 52.6
BolC9t59927H Brassica oleracea HOM05D003737 ORTHO05D004081 9.1e-108 394.8 382 52.6
SHI21216 Sapria himalayana HOM05D003737 ORTHO05D004640 2.0e-107 393.7 497 45.7
arahy.Tifrunner.gnm1.ann1.J916II Arachis hypogaea HOM05D003737 ORTHO05D004640 1.0e-106 391.3 420 50.5
Peaxi162Scf00220g00010 Petunia axillaris HOM05D003737 ORTHO05D004640 5.0e-106 389.0 470 50.0
RcHm_v2.0_Chr1g0324281 Rosa chinensis HOM05D003737 ORTHO05D004640 5.0e-106 389.0 471 47.8
Thhalv10013430m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 8.5e-106 388.3 477 46.1
Oeu013042.2 Olea europaea HOM05D003737 ORTHO05D004640 1.5e-105 387.5 503 44.9
A10p31150 Brassica napus HOM05D003737 ORTHO05D004081 1.9e-105 387.1 383 52.2
BraA10t45159Z Brassica rapa HOM05D003737 ORTHO05D004081 1.9e-105 387.1 383 52.2
AUR62041279 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.9e-105 387.1 407 51.8
PSO170G6472 Papaver somniferum HOM05D003737 ORTHO05D004640 1.6e-104 384.0 418 51.4
PSO782G4010 Papaver somniferum HOM05D003737 ORTHO05D004640 3.0e-103 379.8 418 51.0
Thhalv10020697m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 5.2e-103 379.0 475 45.9
CARHR085310 Cardamine hirsuta HOM05D003737 ORTHO05D004640 6.8e-103 378.6 474 46.2
Aa31LG11G5690 Aethionema arabicum HOM05D003737 ORTHO05D004640 8.8e-103 378.3 471 46.1
Solyc01g096780.4 Solanum lycopersicum HOM05D003737 ORTHO05D004640 2.6e-102 376.7 473 48.4
CARHR208270 Cardamine hirsuta HOM05D003737 ORTHO05D004640 3.4e-102 376.3 467 45.6
AL6G14700 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 4.4e-102 375.9 472 45.3
PGSC0003DMG402027528 Solanum tuberosum HOM05D003737 ORTHO05D004640 9.8e-102 374.8 483 46.6
Carub.0003s0996 Capsella rubella HOM05D003737 ORTHO05D004640 2.2e-101 373.6 472 44.9
Carub.0006s0393 Capsella rubella HOM05D003737 ORTHO05D004640 2.8e-101 373.2 474 46.0
Ciclev10001582m.g Citrus clementina HOM05D003737 ORTHO05D004640 3.7e-101 372.9 317 60.9
AT3G10730 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 6.3e-101 372.1 470 46.0
BraA05t22639Z Brassica rapa HOM05D003737 ORTHO05D004640 6.3e-101 372.1 476 45.6
AT5G04990 Arabidopsis thaliana HOM05D003737 ORTHO05D004640 8.3e-101 371.7 470 45.1
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 8.3e-101 371.7 481 45.7
Sp6g37810 Schrenkiella parvula HOM05D003737 ORTHO05D004640 3.1e-100 369.8 378 50.3
PSO017G3614 Papaver somniferum HOM05D003737 ORTHO05D004640 7.0e-100 368.6 376 51.9
Aa31LG3G3660 Aethionema arabicum HOM05D003737 ORTHO05D004640 9.1e-100 368.2 386 50.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 9.1e-100 368.2 479 45.5
Sopen01g040480 Solanum pennellii HOM05D003737 ORTHO05D004640 1.2e-99 367.9 475 46.1
BolC5t34394H Brassica oleracea HOM05D003737 ORTHO05D004640 3.5e-99 366.3 477 45.5
ECA240G2259 Erigeron canadensis HOM05D003737 ORTHO05D004640 3.5e-99 366.3 466 47.0
AL3G22200 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 1.3e-98 364.4 475 45.1
Aqoxy2G00024 Aquilegia oxysepala HOM05D003737 ORTHO05D004640 2.3e-98 363.6 413 48.2
AL532U10020 Arabidopsis lyrata HOM05D003737 ORTHO05D004640 2.9e-98 363.2 475 44.8
DCAR_003288 Daucus carota HOM05D003737 ORTHO05D004640 2.9e-98 363.2 481 45.9
PSO170G3077 Papaver somniferum HOM05D003737 ORTHO05D004640 6.6e-98 362.1 376 51.3
MSTRG.20485 Avicennia marina HOM05D003737 ORTHO05D004640 1.9e-97 360.5 474 45.4
Nitab4.5_0004903g0010 Nicotiana tabacum HOM05D003737 ORTHO05D004640 7.2e-97 358.6 471 45.0
ATR0307G049 Amborella trichopoda HOM05D003737 ORTHO05D004640 1.2e-96 357.8 422 48.8
HPP92_021189 Vanilla planifolia HOM05D003737 ORTHO05D004640 2.1e-96 357.1 415 46.5
Ah.04g162720 Amaranthus hybridus HOM05D000296 ORTHO05D000175 2.8e-96 356.7 523 44.0
HanXRQChr03g0073711 Helianthus annuus HOM05D003737 ORTHO05D004640 1.8e-95 354.0 466 44.8
Migut.B01171 Erythranthe guttata HOM05D003737 ORTHO05D004640 9.8e-94 348.2 367 51.5
Nitab4.5_0002687g0030 Nicotiana tabacum HOM05D003737 ORTHO05D004640 9.8e-94 348.2 481 44.3
THA.LOC104823158 Tarenaya hassleriana HOM05D003737 ORTHO05D004640 1.3e-93 347.8 473 44.8
BcaB05g21740 Brassica carinata HOM05D003737 ORTHO05D004640 1.7e-93 347.4 385 48.1
Sp3g09060 Schrenkiella parvula HOM05D003737 ORTHO05D004640 1.1e-92 344.7 476 42.9
CANSAT78G0409 Cannabis sativa HOM05D003737 ORTHO05D004640 8.6e-90 335.1 278 59.4
SGA_v2.0_scaffold182G39819 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-89 334.0 390 49.2
SGA_v2.0_scaffold309G48158 Striga asiatica HOM05D003737 ORTHO05D004640 1.9e-89 334.0 380 49.7
unitig_749.g13793 Utricularia gibba HOM05D003737 ORTHO05D004640 1.4e-87 327.8 389 47.3
CDE09G1399 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 8.9e-87 325.1 348 50.3
Os01g0267600 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.9e-84 317.4 373 45.8
CAN.G134.41 Capsicum annuum HOM05D003737 ORTHO05D004640 2.4e-84 317.0 307 53.4
Ca_24114_v3 Cicer arietinum L. HOM05D003737 ORTHO05D004640 7.0e-84 315.5 377 50.1
BcaC06g32213 Brassica carinata HOM05D003737 ORTHO05D004640 1.1e-81 308.1 329 48.6
HanXRQChr09g0247521 Helianthus annuus HOM05D003737 ORTHO05D004640 1.1e-81 308.1 395 45.8
Zm00001eb128110 Zea mays HOM05D003737 ORTHO05D004640 4.3e-81 306.2 373 45.3
unitig_22.g5336 Utricularia gibba HOM05D003737 ORTHO05D004640 1.2e-80 304.7 391 43.0
Os05g0270200 Oryza sativa ssp. japonica HOM05D003737 ORTHO05D004640 1.1e-79 301.6 402 42.0
Zm00001eb233650 Zea mays HOM05D003737 ORTHO05D004640 5.4e-76 289.3 414 41.3
FAN03G1506 Fragaria x ananassa HOM05D003737 ORTHO05D004640 3.5e-75 286.6 456 41.0
vmacro23127 Vaccinium macrocarpon HOM05D003737 ORTHO05D002937 4.6e-75 286.2 360 46.1
ECA236G2275 Erigeron canadensis HOM05D003737 ORTHO05D004640 8.6e-74 282.0 309 49.2
Nn6g33270 Nelumbo nucifera HOM05D003737 ORTHO05D004640 1.5e-73 281.2 384 46.4
Lsat_1_v5_gn_1_105040 Lactuca sativa HOM05D003737 ORTHO05D004640 1.8e-71 274.2 388 41.8
Lsat_1_v5_gn_1_105000 Lactuca sativa HOM05D003737 ORTHO05D004640 2.6e-70 270.4 356 43.8
SEGI_05544 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 6.4e-69 265.8 363 43.0
CDE08G0077 Ceratophyllum demersum HOM05D003737 ORTHO05D004640 3.2e-68 263.5 329 45.6
DCAR_022277 Daucus carota HOM05D003737 ORTHO05D004640 1.5e-65 254.6 212 61.8
Lsat_1_v5_gn_7_65181 Lactuca sativa HOM05D003737 ORTHO05D004640 5.6e-65 252.7 376 42.0
DCAR_022276 Daucus carota HOM05D003737 ORTHO05D004640 7.3e-65 252.3 248 52.4
SMO266G0096 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 2.2e-61 240.7 310 40.0
SMO104G0002 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.8e-61 240.0 310 40.0
QL93p0223_0017 Quercus lobata HOM05D003737 ORTHO05D004640 6.0e-59 232.6 399 39.3
Mapoly0147s0033 Marchantia polymorpha HOM05D003737 ORTHO05D004640 3.3e-57 226.9 393 35.1
SMO356G0438 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 3.3e-57 226.9 305 40.7
BcaC06g32214 Brassica carinata HOM05D003737 ORTHO05D004640 1.5e-54 218.0 265 44.2
Pp3c11_22530 Physcomitrium patens HOM05D003737 ORTHO05D004640 4.4e-54 216.5 375 36.5
Pp3c7_4170 Physcomitrium patens HOM05D003737 ORTHO05D004640 2.9e-53 213.8 369 37.1
SMO119G0482 Selaginella moellendorffii HOM05D003737 ORTHO05D004640 1.9e-52 211.1 290 37.2
GSVIVG01001935001 Vitis vinifera HOM05D003737 ORTHO05D004640 2.4e-52 210.7 142 70.4
Lsat_1_v5_gn_4_103680 Lactuca sativa HOM05D003737 ORTHO05D004640 4.6e-51 206.5 204 52.9
unitig_26.g9749 Utricularia gibba HOM05D003737 ORTHO05D004640 3.0e-50 203.8 265 40.0
HPP92_012444 Vanilla planifolia HOM05D003737 ORTHO05D004640 3.3e-49 200.3 307 38.8
DCAR_014025 Daucus carota HOM05D003737 ORTHO05D004640 6.2e-48 196.1 259 46.3
BolC1t05361H Brassica oleracea HOM05D003737 ORTHO05D004640 5.3e-47 193.0 277 42.2
RcHm_v2.0_Chr2g0101681 Rosa chinensis HOM05D003737 ORTHO05D004640 1.5e-46 191.4 198 51.5
PGR083G2251 Punica granatum HOM05D003737 ORTHO05D004640 3.2e-44 183.7 205 43.9
AagrBONN_evm.TU.Sc2ySwM_344.2065 Anthoceros agrestis HOM05D003737 ORTHO05D004640 2.1e-43 181.0 318 37.1
SEGI_23640 Sequoiadendron giganteum HOM05D003737 ORTHO05D004640 1.0e-42 178.7 206 43.7
Ciclev10003487m.g Citrus clementina HOM05D003737 ORTHO05D004640 4.2e-36 156.8 100 76.0
RcHm_v2.0_Chr2g0101131 Rosa chinensis HOM05D003737 ORTHO05D004640 2.7e-35 154.1 137 55.5
SGA_v2.0_scaffold195G40842 Striga asiatica HOM05D003737 ORTHO05D004640 2.5e-33 147.5 242 39.3
FvH4_1g13360 Fragaria vesca HOM05D003737 ORTHO05D004640 2.6e-30 137.5 206 41.3
Cfa015121 Carpinus fangiana HOM05D003737 ORTHO05D004640 1.1e-25 122.1 74 78.4
AUR62034111 Chenopodium quinoa HOM05D003737 ORTHO05D004640 1.5e-25 121.7 97 59.8
MCO09G802 Micromonas commoda HOM05D003737 ORTHO05D004640 1.5e-25 121.7 192 40.1
FAN23G2857 Fragaria x ananassa HOM05D003737 ORTHO05D004640 8.2e-24 115.9 200 35.5
Phvul.007G106800 Phaseolus vulgaris HOM05D003737 ORTHO05D004640 1.5e-22 111.7 82 65.9
PRCOL_00004494 Prasinoderma coloniale HOM05D003737 ORTHO05D004640 8.5e-21 105.9 193 36.3
Haze_10688 Corylus avellana HOM05D003737 ORTHO05D004640 9.4e-20 102.4 117 52.1
C08p01570 Brassica napus HOM05D003737 ORTHO05D004640 2.3e-18 97.8 71 62.0
Thhalv10015457m.g Eutrema salsugineum HOM05D003737 ORTHO05D004640 6.7e-18 96.3 85 55.3
Atru.chr12.1692 Acer truncatum HOM05D003737 ORTHO05D004640 8.2e-16 89.4 63 69.8
CAN.G481.43 Capsicum annuum HOM05D000879 ORTHO05D002043 5.1e-10 70.1 52 61.5


User provided reference genes

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