Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G007932 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.8e-33 145.2 68 100.0
Potri.008G007800 Populus trichocarpa HOM05D002778 ORTHO05D003112 7.0e-33 143.3 68 98.5
Potri.010G251000 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.7e-26 122.1 66 84.8
Ciclev10026904m.g Citrus clementina HOM05D002778 ORTHO05D003112 4.8e-18 94.0 64 59.4
Prupe.3G019100 Prunus persica HOM05D002778 ORTHO05D003112 7.0e-17 90.1 64 57.8
QL05p082346 Quercus lobata HOM05D002778 ORTHO05D003112 1.2e-16 89.4 64 54.7
MD09G1160500 Malus domestica HOM05D002778 ORTHO05D003112 1.6e-16 89.0 63 57.1
Cfa020956 Carpinus fangiana HOM05D002778 ORTHO05D003112 2.7e-16 88.2 63 55.6
FAN05G2325 Fragaria x ananassa HOM05D000059 ORTHO05D000128 3.5e-16 87.8 68 57.4
RcHm_v2.0_Chr2g0149751 Rosa chinensis HOM05D002778 ORTHO05D003112 2.2e-15 85.1 69 56.5
CiPaw.01G088700 Carya illinoinensis HOM05D002778 ORTHO05D003112 1.5e-14 82.4 64 50.0
MD17G1146300 Malus domestica HOM05D002778 ORTHO05D003112 1.5e-14 82.4 66 53.0
CSS0001650 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 3.2e-14 81.3 63 55.6
CSS0034315 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 9.4e-14 79.7 60 56.7
CSS0024590 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 1.6e-13 79.0 64 56.2
CSS0027476 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 1.6e-13 79.0 64 56.2
GSVIVG01029639001 Vitis vinifera HOM05D002778 ORTHO05D003112 2.3e-12 75.1 65 47.7
Eucgr.F04019 Eucalyptus grandis HOM05D002778 ORTHO05D003112 8.8e-12 73.2 64 48.4
Migut.I01181 Erythranthe guttata HOM05D002778 ORTHO05D003112 1.7e-10 68.9 64 45.3
Manes.06G018000 Manihot esculenta HOM05D002778 ORTHO05D003112 1.1e-09 66.2 58 50.0
Thecc.09G191000 Theobroma cacao HOM05D002778 ORTHO05D003112 1.4e-09 65.9 58 48.3
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 3.1e-09 64.7 60 43.3
TPR.G7055 Trifolium pratense HOM05D002778 ORTHO05D003112 4.1e-09 64.3 67 41.8
CiPaw.08G031900 Carya illinoinensis HOM05D002778 ORTHO05D003112 5.4e-09 63.9 60 43.3
RcHm_v2.0_Chr4g0399141 Rosa chinensis HOM05D002778 ORTHO05D003112 7.0e-09 63.5 65 43.1
CAN.G837.3 Capsicum annuum HOM05D002778 ORTHO05D003112 9.1e-09 63.2 60 43.3
Phvul.009G234900 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 9.1e-09 63.2 65 44.6
Potri.018G140500 Populus trichocarpa HOM05D002778 ORTHO05D003112 9.1e-09 63.2 60 45.0
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 1.2e-08 62.8 60 41.7
MD16G1246800 Malus domestica HOM05D002778 ORTHO05D003112 1.2e-08 62.8 65 40.0
Potri.006G073400 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.2e-08 62.8 58 44.8
Prupe.1G073400 Prunus persica HOM05D002778 ORTHO05D003112 1.2e-08 62.8 65 40.0
Sopen07g004320 Solanum pennellii HOM05D002778 ORTHO05D003112 1.2e-08 62.8 60 45.0
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 1.6e-08 62.4 60 45.0
Medtr2g038220 Medicago truncatula HOM05D002778 ORTHO05D003112 1.6e-08 62.4 65 43.1
Duzib168G0124 Durio zibethinus HOM05D002778 ORTHO05D003112 2.0e-08 62.0 58 46.6
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 2.0e-08 62.0 60 43.3
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 2.0e-08 62.0 60 40.0
Eucgr.C00097 Eucalyptus grandis HOM05D002778 ORTHO05D003112 2.7e-08 61.6 62 41.9
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 2.7e-08 61.6 60 43.3
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 2.7e-08 61.6 60 43.3
MBI16_g36963_MAGBIO Magnolia biondii HOM05D002778 ORTHO05D003112 2.7e-08 61.6 59 45.8
Manes.06G017900 Manihot esculenta HOM05D002778 ORTHO05D003112 2.7e-08 61.6 50 50.0
Manes.14G162900 Manihot esculenta HOM05D002778 ORTHO05D003112 2.7e-08 61.6 58 44.8
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 2.7e-08 61.6 63 41.3
DCAR_018016 Daucus carota HOM05D002778 ORTHO05D003112 3.5e-08 61.2 62 43.5
Glyma.06G077000 Glycine max HOM05D002778 ORTHO05D003112 3.5e-08 61.2 63 39.7
Lalb_Chr08g0243521 Lupinus albus HOM05D002778 ORTHO05D003112 3.5e-08 61.2 60 38.3
Medtr3g108890 Medicago truncatula HOM05D002778 ORTHO05D003112 3.5e-08 61.2 55 41.8
Thecc.09G007900 Theobroma cacao HOM05D002778 ORTHO05D003112 3.5e-08 61.2 60 41.7
AL7G22340 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 4.5e-08 60.8 50 50.0
BcaC01g01200 Brassica carinata HOM05D002778 ORTHO05D003112 4.5e-08 60.8 50 50.0
Lsat_1_v5_gn_3_19520 Lactuca sativa HOM05D002778 ORTHO05D003112 4.5e-08 60.8 60 40.0
PGR142G4130 Punica granatum HOM05D002778 ORTHO05D003112 4.5e-08 60.8 53 47.2
BcaB03g12624 Brassica carinata HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
BcaC09g52196 Brassica carinata HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
BcaNung00501 Brassica carinata HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
A01p08270 Brassica napus HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
A03p59330 Brassica napus HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
C01p09290 Brassica napus HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
C07p57350 Brassica napus HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
BolC1t00918H Brassica oleracea HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
BolC3t21213H Brassica oleracea HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
BolC7t46204H Brassica oleracea HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
BraA01t00772Z Brassica rapa HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
BraA03t14990Z Brassica rapa HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
Ciclev10010727m.g Citrus clementina HOM05D002778 ORTHO05D003112 5.9e-08 60.5 60 43.3
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 5.9e-08 60.5 60 41.7
Eucgr.C02015 Eucalyptus grandis HOM05D002778 ORTHO05D003112 5.9e-08 60.5 60 40.0
Manes.04G056300 Manihot esculenta HOM05D002778 ORTHO05D003112 5.9e-08 60.5 68 42.6
Sp7g27720 Schrenkiella parvula HOM05D002778 ORTHO05D003112 5.9e-08 60.5 50 50.0
HanXRQChr17g0538041 Helianthus annuus HOM05D002778 ORTHO05D003112 7.7e-08 60.1 60 38.3
Lalb_Chr07g0180721 Lupinus albus HOM05D002778 ORTHO05D003112 7.7e-08 60.1 65 43.1
Manes.06G018100 Manihot esculenta HOM05D002778 ORTHO05D003112 7.7e-08 60.1 58 41.4
Manes.09G005702 Manihot esculenta HOM05D002778 ORTHO05D003112 7.7e-08 60.1 58 43.1
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 7.7e-08 60.1 60 40.0
TWI75G0683 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 7.7e-08 60.1 50 50.0
Nn8g40687 Nelumbo nucifera HOM05D002778 ORTHO05D003112 1.0e-07 59.7 60 40.0
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 1.0e-07 59.7 60 41.7
BcaC09g51768 Brassica carinata HOM05D002778 ORTHO05D003112 1.3e-07 59.3 50 48.0
CANSAT35G1850 Cannabis sativa HOM05D002778 ORTHO05D003112 1.3e-07 59.3 65 40.0
CARHR237810 Cardamine hirsuta HOM05D002778 ORTHO05D003112 1.3e-07 59.3 50 50.0
Cpa.g.sc23.21 Carica papaya HOM05D002778 ORTHO05D003112 1.3e-07 59.3 60 41.7
Eucgr.C02016 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.3e-07 59.3 59 40.7
Eucgr.J02702 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.3e-07 59.3 59 40.7
HanXRQChr10g0308951 Helianthus annuus HOM05D002778 ORTHO05D003112 1.3e-07 59.3 61 39.3
Sed0013186 Sechium edule HOM05D002778 ORTHO05D003112 1.3e-07 59.3 59 42.4
AT4G29905 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 1.7e-07 58.9 50 48.0
C03p89030 Brassica napus HOM05D002778 ORTHO05D003112 1.7e-07 58.9 49 49.0
Carub.0007s1074 Capsella rubella HOM05D002778 ORTHO05D003112 1.7e-07 58.9 50 48.0
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 1.7e-07 58.9 60 35.0
Glyma.14G134900 Glycine max HOM05D002778 ORTHO05D003112 1.7e-07 58.9 58 39.7
TPR.G12466 Trifolium pratense HOM05D002778 ORTHO05D003112 1.7e-07 58.9 55 40.0
CAN.G1185.1 Capsicum annuum HOM05D002778 ORTHO05D003112 2.3e-07 58.5 55 43.6
Gohir.D05G066400 Gossypium hirsutum HOM05D002778 ORTHO05D003112 2.3e-07 58.5 60 40.0
Gorai.009G067200 Gossypium raimondii HOM05D002778 ORTHO05D003112 2.3e-07 58.5 60 40.0
Lalb_Chr23g0276751 Lupinus albus HOM05D002778 ORTHO05D003112 2.3e-07 58.5 62 40.3
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 2.3e-07 58.5 60 36.7
Duzib187G1568 Durio zibethinus HOM05D002778 ORTHO05D003112 2.9e-07 58.2 60 38.3
Glyma.09G060700 Glycine max HOM05D002778 ORTHO05D003112 2.9e-07 58.2 65 41.5
Gorai.003G154800 Gossypium raimondii HOM05D002778 ORTHO05D003112 2.9e-07 58.2 55 43.6
Lj6g0016516 Lotus japonicus HOM05D002778 ORTHO05D003112 2.9e-07 58.2 65 40.0
THA.LOC104814646 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 2.9e-07 58.2 62 43.5
Ca_15657_v3 Cicer arietinum L. HOM05D000122 ORTHO05D000139 3.8e-07 57.8 55 38.2
Cc01_g10000 Coffea canephora HOM05D002778 ORTHO05D003112 3.8e-07 57.8 60 36.7
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 3.8e-07 57.8 60 38.3
Duzib150G0922 Durio zibethinus HOM05D002778 ORTHO05D003112 3.8e-07 57.8 50 48.0
MD13G1240400 Malus domestica HOM05D002778 ORTHO05D003112 3.8e-07 57.8 60 40.0
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 3.8e-07 57.8 60 38.3
Potri.018G007300 Populus trichocarpa HOM05D002778 ORTHO05D003112 3.8e-07 57.8 60 35.0
Prupe.1G459600 Prunus persica HOM05D002778 ORTHO05D003112 3.8e-07 57.8 50 50.0
AT5G57123 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 5.0e-07 57.4 50 46.0
BolC3t13955H Brassica oleracea HOM05D002778 ORTHO05D003112 5.0e-07 57.4 50 46.0
MELO3C003964.2 Cucumis melo HOM05D002778 ORTHO05D003112 5.0e-07 57.4 60 38.3
Glyma.15G167300 Glycine max HOM05D002778 ORTHO05D003112 5.0e-07 57.4 65 40.0
Gohir.A03G021466 Gossypium hirsutum HOM05D002778 ORTHO05D003112 5.0e-07 57.4 55 43.6
Gohir.A05G063800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 5.0e-07 57.4 60 38.3
Gohir.D03G147300 Gossypium hirsutum HOM05D002778 ORTHO05D003112 6.6e-07 57.0 55 41.8
Phvul.001G059600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 6.6e-07 57.0 58 39.7
TWI31G1116 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 6.6e-07 57.0 50 48.0
CiPaw.07G198400 Carya illinoinensis HOM05D002778 ORTHO05D003112 8.6e-07 56.6 50 48.0
Lj4g0026496 Lotus japonicus HOM05D002778 ORTHO05D003112 8.6e-07 56.6 56 42.9
Lalb_Chr08g0231961 Lupinus albus HOM05D002778 ORTHO05D003112 8.6e-07 56.6 62 38.7
Lalb_Chr11g0074711 Lupinus albus HOM05D002778 ORTHO05D003112 8.6e-07 56.6 62 40.3
Phvul.003G140426 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 8.6e-07 56.6 65 36.9
Sed0006590 Sechium edule HOM05D002778 ORTHO05D003112 8.6e-07 56.6 60 38.3
ATR0580G016 Amborella trichopoda HOM05D002778 ORTHO05D003112 1.1e-06 56.2 59 37.3
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 1.9e-06 55.5 55 41.8
Haze_21753 Corylus avellana HOM05D002778 ORTHO05D003112 1.9e-06 55.5 60 36.7
Migut.J00787 Erythranthe guttata HOM05D002778 ORTHO05D003112 1.9e-06 55.5 50 48.0
Lsat_1_v5_gn_5_83800 Lactuca sativa HOM05D002778 ORTHO05D003112 1.9e-06 55.5 66 36.4
Lalb_Chr13g0299861 Lupinus albus HOM05D002778 ORTHO05D003112 1.9e-06 55.5 60 41.7
QL02p047015 Quercus lobata HOM05D002778 ORTHO05D003112 1.9e-06 55.5 60 40.0
SalBow5G0103 Salvia bowleyana HOM05D002778 ORTHO05D003112 1.9e-06 55.5 55 45.5
SalBow5G3358 Salvia bowleyana HOM05D002778 ORTHO05D003112 1.9e-06 55.5 55 45.5
THA.LOC104811766 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 1.9e-06 55.5 65 36.9
AL8G33050 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BcaB01g04445 Brassica carinata HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BcaB08g36001 Brassica carinata HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BcaC01g06467 Brassica carinata HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BcaC01g06468 Brassica carinata HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BcaC04g20009 Brassica carinata HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BcaNung05127 Brassica carinata HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
A03p12970 Brassica napus HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
A10p14450 Brassica napus HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
C03p15140 Brassica napus HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
C09p48860 Brassica napus HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BolC9t57733H Brassica oleracea HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
BraA03t10605Z Brassica rapa HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
Carub.0008s1763 Capsella rubella HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
CARHR270900 Cardamine hirsuta HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
Cfa013463 Carpinus fangiana HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 46.0
CiPaw.08G020200 Carya illinoinensis HOM05D002778 ORTHO05D003112 2.5e-06 55.1 61 34.4
Thhalv10015218m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 2.5e-06 55.1 50 44.0
Glyma.04G075800 Glycine max HOM05D002778 ORTHO05D003112 2.5e-06 55.1 55 38.2
Nn8g40694 Nelumbo nucifera HOM05D002778 ORTHO05D003112 2.5e-06 55.1 65 36.9
PSO063G3231 Papaver somniferum HOM05D002778 ORTHO05D003112 2.5e-06 55.1 53 41.5
PSO170G0913 Papaver somniferum HOM05D002778 ORTHO05D003112 2.5e-06 55.1 53 41.5
Peaxi162Scf00046g00230 Petunia axillaris HOM05D002778 ORTHO05D003112 2.5e-06 55.1 58 37.9
Phvul.009G101600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 2.5e-06 55.1 55 38.2
Sed0003600 Sechium edule HOM05D002778 ORTHO05D003112 2.5e-06 55.1 60 35.0
Haze_22042 Corylus avellana HOM05D002778 ORTHO05D003112 3.3e-06 54.7 50 44.0
Glyma.17G197800 Glycine max HOM05D002778 ORTHO05D003112 3.3e-06 54.7 56 37.5
PSO170G3710 Papaver somniferum HOM05D002778 ORTHO05D003112 3.3e-06 54.7 53 41.5
THA.LOC104813502 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 3.3e-06 54.7 50 44.0
TPR.G5389 Trifolium pratense HOM05D002778 ORTHO05D003112 3.3e-06 54.7 57 38.6
Glyma.13G101500 Glycine max HOM05D002778 ORTHO05D003112 4.2e-06 54.3 65 36.9
Glyma.17G058100 Glycine max HOM05D002778 ORTHO05D003112 4.2e-06 54.3 65 36.9
Lj1g0023199 Lotus japonicus HOM05D002778 ORTHO05D003112 4.2e-06 54.3 58 37.9
Lalb_Chr12g0199661 Lupinus albus HOM05D002778 ORTHO05D003112 4.2e-06 54.3 51 43.1
Peaxi162Scf00046g00231 Petunia axillaris HOM05D002778 ORTHO05D003112 4.2e-06 54.3 54 38.9
Nn6g33479 Nelumbo nucifera HOM05D002778 ORTHO05D003112 5.5e-06 53.9 66 37.9
THA.LOC104803960 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 5.5e-06 53.9 60 36.7
BcaB05g22320 Brassica carinata HOM05D002778 ORTHO05D003112 7.2e-06 53.5 50 44.0
ClCG06G013690 Citrullus lanatus HOM05D002778 ORTHO05D003112 7.2e-06 53.5 60 35.0
ClCG11G011590 Citrullus lanatus HOM05D002778 ORTHO05D003112 7.2e-06 53.5 59 40.7
Nn6g33480 Nelumbo nucifera HOM05D002778 ORTHO05D003112 7.2e-06 53.5 63 38.1
AT5G10695 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 9.5e-06 53.1 60 35.0
Carub.0006s0916 Capsella rubella HOM05D002778 ORTHO05D003112 9.5e-06 53.1 60 36.7
MELO3C017419.2 Cucumis melo HOM05D002778 ORTHO05D003112 9.5e-06 53.1 60 35.0
CsaV3_1G031970 Cucumis sativus L. HOM05D002778 ORTHO05D003112 9.5e-06 53.1 60 35.0
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 9.5e-06 53.1 60 36.7
Nn8g40690 Nelumbo nucifera HOM05D002778 ORTHO05D003112 9.5e-06 53.1 52 44.2
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 9.5e-06 53.1 60 38.3
Zm00001eb181190 Zea mays HOM05D002778 ORTHO05D003112 9.5e-06 53.1 61 36.1


User provided reference genes

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