Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G004500 Populus trichocarpa HOM05D007715 ORTHO05D009760 6.0e-140 500.7 236 100.0
Manes.14G008300 Manihot esculenta HOM05D007715 ORTHO05D009760 5.1e-115 417.9 236 80.9
MD09G1165400 Malus domestica HOM05D007715 ORTHO05D009760 1.4e-112 409.8 237 79.7
Thecc.06G056700 Theobroma cacao HOM05D007715 ORTHO05D009760 1.4e-112 409.8 237 79.7
Ciclev10032622m.g Citrus clementina HOM05D007715 ORTHO05D009760 2.4e-112 409.1 237 79.7
FvH4_6g36931 Fragaria vesca HOM05D007715 ORTHO05D009760 1.3e-110 403.3 237 78.1
Eucgr.F04031 Eucalyptus grandis HOM05D007715 ORTHO05D009760 2.2e-110 402.5 220 82.3
TAR383G0241 Trochodendron aralioides HOM05D007715 ORTHO05D009760 2.2e-110 402.5 236 79.2
RcHm_v2.0_Chr2g0149371 Rosa chinensis HOM05D007715 ORTHO05D009760 8.4e-110 400.6 237 77.6
Duzib235G0054 Durio zibethinus HOM05D007715 ORTHO05D009760 1.1e-109 400.2 239 78.2
FAN02G3529 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.1e-109 400.2 235 78.7
FAN14G5785 Fragaria x ananassa HOM05D007715 ORTHO05D009760 1.4e-109 399.8 237 77.6
CSS0043564 Camellia sinensis var. sinensis HOM05D007715 ORTHO05D009760 3.2e-109 398.7 222 80.6
FAN05G4144 Fragaria x ananassa HOM05D007715 ORTHO05D009760 4.2e-109 398.3 237 77.2
Sabra08G0002100 Salix brachista HOM05D007715 ORTHO05D009760 4.2e-109 398.3 236 82.6
MD17G1162300 Malus domestica HOM05D007715 ORTHO05D009760 5.4e-109 397.9 221 81.0
Haze_16178 Corylus avellana HOM05D007715 ORTHO05D009760 7.1e-109 397.5 240 76.7
Cfa003439 Carpinus fangiana HOM05D007715 ORTHO05D009760 9.3e-109 397.1 219 80.8
FAN09G0474 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.7e-108 395.6 237 76.4
CANSAT01G2071 Cannabis sativa HOM05D007715 ORTHO05D009760 6.0e-108 394.4 231 77.9
Gorai.010G141800 Gossypium raimondii HOM05D007715 ORTHO05D009760 3.0e-107 392.1 233 76.4
Gohir.D06G121500 Gossypium hirsutum HOM05D007715 ORTHO05D009760 5.1e-107 391.3 234 76.9
MBI16_g18218_MAGBIO Magnolia biondii HOM05D007715 ORTHO05D009760 2.5e-106 389.0 226 78.8
Nn2g12750 Nelumbo nucifera HOM05D007715 ORTHO05D009760 3.3e-106 388.7 236 75.8
Atru.BG.168.p Acer truncatum HOM05D007715 ORTHO05D009760 5.6e-106 387.9 211 83.4
PGR102G0299 Punica granatum HOM05D007715 ORTHO05D009760 5.6e-106 387.9 223 78.5
Hma1.2p1_1111F.1_g258440 Hydrangea macrophylla HOM05D007715 ORTHO05D009760 1.6e-105 386.3 237 75.1
CiPaw.02G129300 Carya illinoinensis HOM05D007715 ORTHO05D009760 1.4e-104 383.3 240 74.2
GSVIVG01029551001 Vitis vinifera HOM05D007715 ORTHO05D009760 2.4e-104 382.5 237 75.9
Sc12g0011180 Simmondsia chinensis HOM05D007715 ORTHO05D009760 3.4e-103 378.6 222 76.1
vmacro18742 Vaccinium macrocarpon HOM05D007715 ORTHO05D009760 4.5e-103 378.3 223 78.0
Actinidia38809 Actinidia chinensis HOM05D007715 ORTHO05D009760 1.3e-102 376.7 233 74.2
Cpa.g.sc176.1 Carica papaya HOM05D007715 ORTHO05D009760 1.7e-102 376.3 257 68.9
AUR62025668 Chenopodium quinoa HOM05D007715 ORTHO05D009760 4.9e-102 374.8 232 73.3
Aqoxy7G02738 Aquilegia oxysepala HOM05D007715 ORTHO05D009760 6.4e-102 374.4 236 72.5
QL05p088896 Quercus lobata HOM05D007715 ORTHO05D009760 2.7e-100 369.0 293 62.1
Lsat_1_v5_gn_4_89140 Lactuca sativa HOM05D007715 ORTHO05D009760 6.0e-100 367.9 223 73.5
Cc04_g00030 Coffea canephora HOM05D007715 ORTHO05D009760 7.9e-100 367.5 223 74.9
EL10Ac7g18154 Beta vulgaris HOM05D007715 ORTHO05D009760 1.3e-99 366.7 222 72.5
CiPaw.01G208900 Carya illinoinensis HOM05D007715 ORTHO05D009760 1.8e-99 366.3 231 74.5
CDE05G1192 Ceratophyllum demersum HOM05D007715 ORTHO05D004987 8.7e-99 364.0 236 70.8
Medtr4g005360 Medicago truncatula HOM05D007715 ORTHO05D009760 2.5e-98 362.5 221 71.9
SalBow6G7190 Salvia bowleyana HOM05D007715 ORTHO05D009760 3.3e-98 362.1 222 70.7
AUR62001337 Chenopodium quinoa HOM05D007715 ORTHO05D009760 4.3e-98 361.7 222 73.0
Oeu049631.2 Olea europaea HOM05D007715 ORTHO05D009760 5.6e-98 361.3 221 72.4
Oeu049632.1 Olea europaea HOM05D007715 ORTHO05D009760 5.6e-98 361.3 221 72.4
PSO423G0174 Papaver somniferum HOM05D007715 ORTHO05D009760 5.6e-98 361.3 236 69.5
Hund18594 Selenicereus undatus HOM05D007715 ORTHO05D009760 4.8e-97 358.2 254 66.5
SGA_v2.0_scaffold71G23984 Striga asiatica HOM05D007715 ORTHO05D009760 2.2e-94 349.4 222 71.2
Rhsim08G0250500 Rhododendron simsii HOM05D007715 ORTHO05D009760 2.5e-93 345.9 220 72.3
Lj3g0002381 Lotus japonicus HOM05D007715 ORTHO05D009760 4.6e-92 341.7 222 68.9
Psat7g265440 Pisum sativum HOM05D007715 ORTHO05D009760 4.6e-92 341.7 222 66.7
PGSC0003DMG400009165 Solanum tuberosum HOM05D007715 ORTHO05D009760 1.3e-91 340.1 237 66.7
ATR0626G044 Amborella trichopoda HOM05D007715 ORTHO05D009760 2.3e-91 339.3 228 68.0
HPP92_017384 Vanilla planifolia HOM05D007715 ORTHO05D009760 3.3e-90 335.5 205 72.7
Lalb_Chr01g0011671 Lupinus albus HOM05D007715 ORTHO05D009760 1.1e-88 330.5 225 66.7
Migut.I01201 Erythranthe guttata HOM05D007715 ORTHO05D009760 1.0e-86 323.9 229 64.2
Sp3g18290 Schrenkiella parvula HOM05D007715 ORTHO05D009760 5.0e-86 321.6 235 61.7
Zm00001eb102140 Zea mays HOM05D007715 ORTHO05D009760 5.5e-85 318.2 222 61.7
Glyma.08G224700 Glycine max HOM05D007715 ORTHO05D009760 9.3e-85 317.4 227 66.5
SEGI_32597 Sequoiadendron giganteum HOM05D007715 ORTHO05D009760 1.2e-84 317.0 234 63.2
Duzib192G0685 Durio zibethinus HOM05D007715 ORTHO05D009760 3.5e-84 315.5 175 82.3
AagrBONN_evm.TU.Sc2ySwM_228.4113 Anthoceros agrestis HOM05D007715 ORTHO05D009760 4.8e-81 305.1 224 60.7
Thhalv10020156m.g Eutrema salsugineum HOM05D003198 ORTHO05D009760 2.4e-80 302.8 234 60.7
VMungo0331G1382 Vigna mungo HOM05D007715 ORTHO05D009760 3.4e-79 298.9 233 62.2
C05p44060 Brassica napus HOM05D007715 ORTHO05D009760 3.8e-78 295.4 239 57.3
BraA05t21742Z Brassica rapa HOM05D007715 ORTHO05D009760 4.2e-77 292.0 226 58.4
A05p28660 Brassica napus HOM05D007715 ORTHO05D009760 2.1e-76 289.7 226 58.0
Nitab4.5_0005739g0020 Nicotiana tabacum HOM05D007715 ORTHO05D009760 1.4e-75 287.0 180 73.9
Pp3c3_690 Physcomitrium patens HOM05D007715 ORTHO05D009760 8.8e-75 284.3 228 57.0
Mapoly0008s0087 Marchantia polymorpha HOM05D007715 ORTHO05D009760 5.7e-74 281.6 228 58.3
BolC5t33128H Brassica oleracea HOM05D007715 ORTHO05D009760 9.7e-74 280.8 228 57.0
Phvul.010G164200 Phaseolus vulgaris HOM05D007715 ORTHO05D009760 1.7e-70 270.0 233 56.7
FAN20G1905 Fragaria x ananassa HOM05D007715 ORTHO05D009760 2.2e-70 269.6 156 81.4
Lj9C542G6 Lonicera japonica HOM05D007715 ORTHO05D009760 3.8e-70 268.9 224 57.1
MSTRG.22499 Avicennia marina HOM05D007715 ORTHO05D009760 3.2e-69 265.8 167 70.7
Prupe.3G023100 Prunus persica HOM05D007715 ORTHO05D009760 4.5e-55 218.8 119 82.4
Dinv20335 Davidia involucrata HOM05D007715 ORTHO05D009760 2.2e-54 216.5 119 81.5
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 1.9e-53 213.4 111 86.5
Gohir.A06G117200 Gossypium hirsutum HOM05D007715 ORTHO05D009760 3.0e-51 206.1 136 69.9
PSO423G0098 Papaver somniferum HOM05D007715 ORTHO05D009760 6.8e-51 204.9 147 64.6
Nitab4.5_0005664g0070 Nicotiana tabacum HOM05D007715 ORTHO05D009760 8.3e-49 198.0 203 49.3
Peaxi162Scf00038g02642 Petunia axillaris HOM05D007715 ORTHO05D009760 1.8e-43 180.3 102 78.4
Carub.0003s2020 Capsella rubella HOM05D007715 ORTHO05D009760 4.0e-43 179.1 132 60.6
SMO201G0133 Selaginella moellendorffii HOM05D007715 ORTHO05D009760 4.4e-42 175.6 194 45.9
Actinidia21887 Actinidia chinensis HOM05D007702 ORTHO05D009736 2.3e-35 153.3 133 57.1
TPR.G38750 Trifolium pratense HOM05D007715 ORTHO05D009760 5.4e-24 115.5 85 52.9
Os09g0497600 Oryza sativa ssp. japonica HOM05D007715 ORTHO05D009760 9.2e-24 114.8 70 64.3
Sopen03g041710 Solanum pennellii HOM05D007715 ORTHO05D009760 1.6e-23 114.0 212 37.7
Medtr4g005380 Medicago truncatula HOM05D007715 ORTHO05D009760 8.6e-22 108.2 79 51.9
TPR.G38822 Trifolium pratense HOM05D007715 ORTHO05D009760 9.5e-21 104.8 86 55.8
Actinidia21654 Actinidia chinensis HOM05D007715 ORTHO05D009760 4.7e-20 102.4 107 54.2
Psat7g265240 Pisum sativum HOM05D007122 ORTHO05D008918 9.8e-18 94.7 58 70.7
AL3G33970 Arabidopsis lyrata HOM05D007715 ORTHO05D009760 3.5e-07 59.7 51 56.9
Solyc03g123970.1 Solanum lycopersicum HOM05D007715 ORTHO05D009760 4.6e-07 59.3 53 64.2


User provided reference genes

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