Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-159 566.6 288 100.0
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.7e-144 516.2 275 96.0
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 8.1e-131 470.7 279 87.5
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 2.1e-118 429.5 349 68.5
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.3e-109 400.2 291 74.6
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-71 273.9 296 56.4
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 4.1e-66 255.8 286 54.5
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 4.7e-62 242.3 295 52.5
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 2.2e-59 233.4 250 53.6
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 2.2e-59 233.4 295 51.2
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 4.8e-59 232.3 297 51.9
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.0e-56 224.6 288 48.6
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 1.3e-56 224.2 293 51.5
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.1e-55 221.1 296 45.9
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 3.2e-55 219.5 383 41.3
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 7.2e-55 218.4 270 48.5
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 2.1e-54 216.9 294 48.0
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.7e-54 215.7 286 48.3
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 4.0e-53 212.6 234 52.6
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 8.8e-53 211.5 272 47.8
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 5.7e-52 208.8 242 48.3
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 3.7e-51 206.1 255 48.2
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 3.7e-51 206.1 267 46.4
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 4.8e-51 205.7 236 51.3
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 6.3e-51 205.3 290 47.2
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 2.4e-50 203.4 287 46.3
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 3.1e-50 203.0 280 46.1
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 3.1e-50 203.0 241 48.5
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 5.3e-50 202.2 302 43.7
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 9.1e-50 201.4 296 43.6
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.6e-49 200.7 258 47.7
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 2.0e-49 200.3 291 43.6
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 2.7e-49 199.9 297 44.1
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 3.5e-49 199.5 292 42.1
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 3.5e-49 199.5 211 54.0
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 4.5e-49 199.1 295 47.1
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 7.7e-49 198.4 166 66.9
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 2.2e-48 196.8 291 43.3
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 5.0e-48 195.7 293 40.6
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 1.1e-47 194.5 290 45.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 1.9e-47 193.7 326 40.8
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 7.2e-47 191.8 289 42.9
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 9.4e-47 191.4 258 45.7
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 1.6e-46 190.7 295 46.8
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 4.7e-46 189.1 264 47.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 6.1e-46 188.7 210 52.4
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 1.0e-45 188.0 238 46.2
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.8e-45 187.2 287 41.5
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 3.0e-45 186.4 236 46.2
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 2.6e-44 183.3 290 43.1
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 2.6e-44 183.3 290 43.1
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 4.4e-44 182.6 289 40.1
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 7.5e-44 181.8 297 44.4
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 1.3e-43 181.0 298 39.6
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 1.7e-43 180.6 297 41.4
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 2.2e-43 180.3 234 47.0
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 2.8e-43 179.9 264 45.5
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 6.3e-43 178.7 237 45.6
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 8.3e-43 178.3 276 42.8
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 8.3e-43 178.3 289 38.8
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 1.4e-42 177.6 212 50.5
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 2.4e-42 176.8 235 45.1
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.4e-42 176.8 288 42.4
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.1e-42 176.0 313 38.7
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.1e-42 176.0 313 38.7
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 5.4e-42 175.6 294 43.9
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 7.0e-42 175.3 281 42.3
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 9.1e-42 174.9 246 44.7
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 9.1e-42 174.9 338 38.8
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.6e-41 174.1 268 47.0
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.6e-41 174.1 273 44.7
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 4.5e-41 172.6 227 48.5
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 1.0e-40 171.4 259 47.5
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.0e-40 171.4 256 41.8
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.2e-40 170.2 240 42.9
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 8.5e-40 168.3 246 43.1
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 1.5e-39 167.5 241 43.6
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.9e-39 167.2 406 34.0
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 1.9e-39 167.2 387 34.9
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 4.2e-39 166.0 255 42.7
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 4.2e-39 166.0 273 38.5
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 5.5e-39 165.6 287 38.7
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.2e-38 164.5 204 48.0
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 2.1e-38 163.7 251 45.0
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 6.1e-38 162.2 332 35.5
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 8.0e-38 161.8 289 41.5
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 8.0e-38 161.8 298 39.9
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.6e-36 156.8 200 47.0
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.4e-36 156.4 258 41.1
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 5.7e-36 155.6 294 39.8
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 5.7e-36 155.6 285 39.3
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 1.3e-35 154.5 222 46.4
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 1.3e-35 154.5 232 42.7
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 1.3e-35 154.5 224 43.3
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.3e-35 154.5 283 39.2
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 2.8e-35 153.3 289 40.1
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 1.4e-34 151.0 255 40.0
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 4.1e-34 149.4 297 41.4
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 7.0e-34 148.7 285 38.2
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 2.0e-33 147.1 295 37.6
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.7e-33 146.7 322 40.1
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 3.5e-33 146.4 285 38.9
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 3.5e-33 146.4 297 40.7
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 5.9e-33 145.6 269 40.1
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 7.8e-33 145.2 236 43.6
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.7e-32 144.1 220 44.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 3.8e-32 142.9 273 39.6
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 3.8e-32 142.9 273 39.6
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 1.1e-31 141.4 286 36.0
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.5e-31 141.0 213 43.2
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 1.9e-31 140.6 273 39.2
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 1.9e-31 140.6 168 51.8
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 3.3e-31 139.8 238 38.2
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.3e-31 139.8 171 45.6
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 4.3e-31 139.4 273 39.2
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 7.3e-31 138.7 302 36.8
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 2.1e-30 137.1 273 38.8
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 4.0e-29 132.9 211 40.8
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 5.2e-29 132.5 170 48.2
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 8.9e-29 131.7 214 39.7
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 2.6e-28 130.2 185 44.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 3.4e-28 129.8 323 37.2
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.3e-27 127.9 280 38.2
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 2.9e-27 126.7 207 40.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 6.4e-27 125.6 234 38.0
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 2.4e-26 123.6 305 35.7
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 5.6e-23 112.5 279 33.3
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 9.5e-23 111.7 284 36.3
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.8e-22 110.2 287 34.5
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 3.6e-22 109.8 287 33.4
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 3.6e-22 109.8 265 35.8
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.8e-21 107.5 281 32.4
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 4.6e-17 92.8 277 31.4
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 4.3e-15 86.3 84 52.4
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 9.5e-15 85.1 276 30.1
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 1.6e-14 84.3 86 53.5
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 6.2e-14 82.4 231 30.7
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 8.9e-13 78.6 232 31.5
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 2.2e-11 73.9 117 40.2
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 1.3e-08 64.7 122 42.6
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 3.0e-08 63.5 55 58.2
Dinv03808 Davidia involucrata HOM05D005413 ORTHO05D006536 6.2e-06 55.8 116 39.7


User provided reference genes

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