Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G146000 Populus trichocarpa HOM05D004281 ORTHO05D004839 7.8e-118 427.2 220 100.0
Potri.017G001800 Populus trichocarpa HOM05D004281 ORTHO05D004839 1.0e-101 373.6 222 88.7
Sabra17G0005800 Salix brachista HOM05D004281 ORTHO05D004839 5.4e-95 351.3 216 86.1
arahy.Tifrunner.gnm1.ann1.MYV34H Arachis hypogaea HOM05D004281 ORTHO05D004839 2.6e-81 305.8 216 74.5
Manes.02G102600 Manihot esculenta HOM05D004281 ORTHO05D004839 1.4e-79 300.1 224 71.9
TAR365G0664 Trochodendron aralioides HOM05D004281 ORTHO05D004839 1.2e-78 297.0 192 79.2
arahy.Tifrunner.gnm1.ann1.HHGT95 Arachis hypogaea HOM05D004281 ORTHO05D004839 2.7e-78 295.8 173 86.7
Ciclev10022149m.g Citrus clementina HOM05D004281 ORTHO05D004839 2.7e-78 295.8 195 79.0
THA.LOC104804375 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 7.9e-78 294.3 195 77.9
FvH4_2g10600 Fragaria vesca HOM05D004281 ORTHO05D004839 3.9e-77 292.0 225 70.7
FAN24G2282 Fragaria x ananassa HOM05D004281 ORTHO05D004839 3.9e-77 292.0 225 70.7
Glyma.08G087500 Glycine max HOM05D004281 ORTHO05D004839 5.1e-77 291.6 224 70.1
Atru.chr8.1217 Acer truncatum HOM05D004281 ORTHO05D004839 1.5e-76 290.0 221 71.5
GSVIVG01038261001 Vitis vinifera HOM05D004281 ORTHO05D004839 1.9e-76 289.7 178 82.0
Atru.chr3.1980 Acer truncatum HOM05D004281 ORTHO05D004839 3.3e-76 288.9 194 78.4
THA.LOC104802349 Tarenaya hassleriana HOM05D004281 ORTHO05D004839 4.3e-76 288.5 194 75.3
Thhalv10001807m.g Eutrema salsugineum HOM05D004281 ORTHO05D004839 9.6e-76 287.3 209 70.3
Medtr4g094700 Medicago truncatula HOM05D004281 ORTHO05D004839 9.6e-76 287.3 228 69.3
Psat7g088840 Pisum sativum HOM05D004281 ORTHO05D004839 9.6e-76 287.3 167 87.4
Carub.0004s2660 Capsella rubella HOM05D004281 ORTHO05D004839 1.3e-75 287.0 192 74.5
Sp4g26130 Schrenkiella parvula HOM05D004281 ORTHO05D004839 1.3e-75 287.0 209 69.9
TWI15G0067 Tripterygium wilfordii HOM05D004281 ORTHO05D004839 1.6e-75 286.6 225 68.4
Aa31LG1G25720 Aethionema arabicum HOM05D004281 ORTHO05D004839 2.1e-75 286.2 192 74.5
Gohir.A11G012100 Gossypium hirsutum HOM05D004281 ORTHO05D004839 2.1e-75 286.2 192 77.1
CiPaw.01G202700 Carya illinoinensis HOM05D004281 ORTHO05D004839 2.8e-75 285.8 224 69.6
Psat5g058760 Pisum sativum HOM05D004281 ORTHO05D004839 3.7e-75 285.4 170 84.7
PGR142G2669 Punica granatum HOM05D004281 ORTHO05D004839 3.7e-75 285.4 203 74.4
CARHR139210 Cardamine hirsuta HOM05D004281 ORTHO05D004839 6.3e-75 284.6 191 75.4
Gohir.A04G135700 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.3e-75 284.6 192 77.6
Gohir.D04G178800 Gossypium hirsutum HOM05D004281 ORTHO05D004839 6.3e-75 284.6 192 77.6
Gorai.012G171900 Gossypium raimondii HOM05D004281 ORTHO05D004839 6.3e-75 284.6 192 77.6
Lj4g0008259 Lotus japonicus HOM05D004281 ORTHO05D004839 6.3e-75 284.6 206 74.3
FAN15G1026 Fragaria x ananassa HOM05D004281 ORTHO05D004839 8.2e-75 284.3 218 69.7
Dinv24743 Davidia involucrata HOM05D004281 ORTHO05D004839 1.1e-74 283.9 200 76.0
Eucgr.F02801 Eucalyptus grandis HOM05D004281 ORTHO05D004839 1.4e-74 283.5 190 76.3
AT2G44050 Arabidopsis thaliana HOM05D004281 ORTHO05D004839 1.8e-74 283.1 209 69.4
Gohir.D11G011300 Gossypium hirsutum HOM05D004281 ORTHO05D004839 1.8e-74 283.1 191 77.0
Gorai.007G012700 Gossypium raimondii HOM05D004281 ORTHO05D004839 1.8e-74 283.1 191 77.0
Eucgr.L01202 Eucalyptus grandis HOM05D004281 ORTHO05D004839 2.4e-74 282.7 190 77.4
Nn1g09410 Nelumbo nucifera HOM05D004281 ORTHO05D004839 2.4e-74 282.7 196 76.0
Prupe.7G270800 Prunus persica HOM05D004281 ORTHO05D004839 3.1e-74 282.3 236 68.2
CANSAT78G2301 Cannabis sativa HOM05D004281 ORTHO05D004839 4.1e-74 282.0 224 68.3
AL4G42920 Arabidopsis lyrata HOM05D004281 ORTHO05D004839 2.0e-73 279.6 191 72.3
BraA04t18776Z Brassica rapa HOM05D004281 ORTHO05D004839 2.0e-73 279.6 191 73.8
BolC3t15286H Brassica oleracea HOM05D004281 ORTHO05D004839 2.6e-73 279.3 191 72.8
A03p24650 Brassica napus HOM05D004281 ORTHO05D004839 3.4e-73 278.9 218 66.5
BraA03t11671Z Brassica rapa HOM05D004281 ORTHO05D004839 3.4e-73 278.9 218 66.5
Lalb_Chr13g0292401 Lupinus albus HOM05D004281 ORTHO05D004839 3.4e-73 278.9 212 69.8
Aa31LG10G14140 Aethionema arabicum HOM05D004281 ORTHO05D004839 4.5e-73 278.5 191 73.8
Actinidia18388 Actinidia chinensis HOM05D004281 ORTHO05D004839 5.9e-73 278.1 210 72.4
AUR62023693 Chenopodium quinoa HOM05D004281 ORTHO05D004839 5.9e-73 278.1 223 63.7
BcaB01g03334 Brassica carinata HOM05D004281 ORTHO05D004839 1.0e-72 277.3 191 73.8
CSS0013668 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.0e-72 277.3 214 70.6
A04p33170 Brassica napus HOM05D004281 ORTHO05D004839 1.3e-72 276.9 187 74.3
BcaB06g29353 Brassica carinata HOM05D004281 ORTHO05D004839 2.2e-72 276.2 191 73.3
vmacro00726 Vaccinium macrocarpon HOM05D004281 ORTHO05D004839 2.2e-72 276.2 177 79.7
CSS0036502 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-72 275.8 214 69.6
BcaC02g07139 Brassica carinata HOM05D004281 ORTHO05D004839 3.8e-72 275.4 226 64.6
COL.COLO4_27572 Corchorus olitorius HOM05D004281 ORTHO05D004839 3.8e-72 275.4 202 72.8
RcHm_v2.0_Chr2g0084411 Rosa chinensis HOM05D004281 ORTHO05D004839 3.8e-72 275.4 170 81.8
BolC4t28587H Brassica oleracea HOM05D004281 ORTHO05D004839 5.0e-72 275.0 209 67.5
EL10Ac3g06178 Beta vulgaris HOM05D004281 ORTHO05D004839 6.5e-72 274.6 224 62.9
Phvul.002G189800 Phaseolus vulgaris HOM05D004281 ORTHO05D004839 8.5e-72 274.2 219 67.6
Thecc.05G001000 Theobroma cacao HOM05D004281 ORTHO05D004839 8.5e-72 274.2 194 73.7
FvH4_1g00110 Fragaria vesca HOM05D004281 ORTHO05D004839 1.4e-71 273.5 220 69.1
Lalb_Chr12g0209091 Lupinus albus HOM05D004281 ORTHO05D004839 1.4e-71 273.5 208 69.2
Rhsim09G0002300 Rhododendron simsii HOM05D000705 ORTHO05D002970 1.4e-71 273.5 195 74.4
MSTRG.24546 Avicennia marina HOM05D004281 ORTHO05D004839 2.5e-71 272.7 202 72.8
EL10Ac4g08581 Beta vulgaris HOM05D004281 ORTHO05D004839 2.5e-71 272.7 190 70.5
ECA233G0955 Erigeron canadensis HOM05D004281 ORTHO05D004839 4.2e-71 271.9 169 79.9
Migut.G00913 Erythranthe guttata HOM05D004281 ORTHO05D004839 4.2e-71 271.9 187 76.5
C03p29390 Brassica napus HOM05D004281 ORTHO05D004839 1.2e-70 270.4 228 64.5
SGA_v2.0_scaffold37G14906 Striga asiatica HOM05D004281 ORTHO05D004839 1.6e-70 270.0 239 64.4
MD15G1142400 Malus domestica HOM05D004281 ORTHO05D004839 2.7e-70 269.2 191 71.7
HPP92_005601 Vanilla planifolia HOM05D004281 ORTHO05D004839 3.6e-70 268.9 193 72.5
AUR62002492 Chenopodium quinoa HOM05D004281 ORTHO05D004839 6.1e-70 268.1 239 59.8
PGR142G1214 Punica granatum HOM05D004281 ORTHO05D004839 1.0e-69 267.3 215 67.0
BcaB06g29512 Brassica carinata HOM05D004281 ORTHO05D004839 1.3e-69 266.9 238 60.9
HanXRQChr13g0392191 Helianthus annuus HOM05D004281 ORTHO05D004839 3.0e-69 265.8 181 72.9
CDE09G0590 Ceratophyllum demersum HOM05D004281 ORTHO05D004839 6.7e-69 264.6 221 65.6
Lsat_1_v5_gn_8_33320 Lactuca sativa HOM05D004281 ORTHO05D004839 6.7e-69 264.6 223 64.1
Aqoxy7G00623 Aquilegia oxysepala HOM05D004281 ORTHO05D004839 8.7e-69 264.2 166 80.1
Cc00_g16880 Coffea canephora HOM05D004281 ORTHO05D004839 1.9e-68 263.1 222 66.7
HanXRQChr13g0392171 Helianthus annuus HOM05D004281 ORTHO05D004839 1.9e-68 263.1 197 69.0
QL10p065802 Quercus lobata HOM05D004281 ORTHO05D004839 2.5e-68 262.7 212 67.9
PSO675G2617 Papaver somniferum HOM05D004281 ORTHO05D004839 4.3e-68 261.9 192 71.4
Cc05_g03580 Coffea canephora HOM05D004281 ORTHO05D004839 5.7e-68 261.5 180 75.6
Ca_18245_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 7.4e-68 261.2 158 83.5
PSO732G0016 Papaver somniferum HOM05D004281 ORTHO05D004839 7.4e-68 261.2 192 70.8
BcaC01g05189 Brassica carinata HOM05D001249 ORTHO05D003440 2.2e-67 259.6 179 72.6
VMungo0251G0005 Vigna mungo HOM05D004281 ORTHO05D004839 1.4e-66 256.9 210 66.7
FAN26G2986 Fragaria x ananassa HOM05D000705 ORTHO05D004839 5.3e-66 255.0 202 71.3
C04p70870 Brassica napus HOM05D001249 ORTHO05D003440 2.6e-65 252.7 199 64.8
Ah.13g073140 Amaranthus hybridus HOM05D000705 ORTHO05D004839 3.4e-65 252.3 190 66.3
TPR.G31246 Trifolium pratense HOM05D004281 ORTHO05D004839 3.4e-65 252.3 188 73.4
Sopen08g005770 Solanum pennellii HOM05D004281 ORTHO05D004839 7.7e-65 251.1 202 64.9
Solyc08g015660.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 1.7e-64 250.0 204 64.2
Peaxi162Scf00459g00125 Petunia axillaris HOM05D004281 ORTHO05D004839 2.2e-64 249.6 186 68.3
Sed0022244 Sechium edule HOM05D004281 ORTHO05D004839 2.2e-64 249.6 213 62.9
PGSC0003DMG400025217 Solanum tuberosum HOM05D004281 ORTHO05D004839 2.2e-64 249.6 203 64.5
CAN.G566.44 Capsicum annuum HOM05D004281 ORTHO05D004839 5.0e-64 248.4 184 68.5
CsaV3_6G032410 Cucumis sativus L. HOM05D004281 ORTHO05D004839 5.0e-64 248.4 218 61.5
PGSC0003DMG400029273 Solanum tuberosum HOM05D004281 ORTHO05D004839 5.0e-64 248.4 210 63.8
Nitab4.5_0000668g0110 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.1e-63 247.3 211 65.4
Lsat_1_v5_gn_8_33340 Lactuca sativa HOM05D004281 ORTHO05D004839 1.4e-63 246.9 139 86.3
Nitab4.5_0001110g0040 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.5e-63 246.1 213 64.8
CAN.G607.11 Capsicum annuum HOM05D004281 ORTHO05D004839 4.2e-63 245.4 201 65.2
unitig_578.g16718 Utricularia gibba HOM05D000499 ORTHO05D007471 5.5e-63 245.0 195 65.6
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 9.4e-63 244.2 224 60.7
Haze_11113 Corylus avellana HOM05D004281 ORTHO05D004839 1.2e-62 243.8 142 84.5
Sed0015421 Sechium edule HOM05D004281 ORTHO05D004839 1.2e-62 243.8 205 64.9
Oeu014981.1 Olea europaea HOM05D004281 ORTHO05D004839 1.6e-62 243.4 146 82.9
Solyc12g096590.3 Solanum lycopersicum HOM05D004281 ORTHO05D004839 2.1e-62 243.0 211 63.5
Cpa.g.sc9.245 Carica papaya HOM05D004281 ORTHO05D004839 2.7e-62 242.7 226 63.7
Sopen12g032420 Solanum pennellii HOM05D004281 ORTHO05D004839 2.7e-62 242.7 211 63.5
Zm00001eb068110 Zea mays HOM05D004281 ORTHO05D004839 7.9e-62 241.1 164 73.2
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.9e-61 238.8 243 58.4
Zm00001eb432360 Zea mays HOM05D004281 ORTHO05D004839 2.0e-60 236.5 194 63.4
MELO3C011439.2 Cucumis melo HOM05D004281 ORTHO05D004839 2.6e-60 236.1 218 59.6
Os04g0497400 Oryza sativa ssp. japonica HOM05D004281 ORTHO05D004839 2.6e-60 236.1 154 74.7
Pp3c27_2710 Physcomitrium patens HOM05D004281 ORTHO05D004839 6.9e-58 228.0 158 69.6
Nitab4.5_0001091g0070 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.6e-57 226.1 187 62.6
SMO198G0030 Selaginella moellendorffii HOM05D004281 ORTHO05D004839 3.4e-57 225.7 190 61.1
Pp3c16_5700 Physcomitrium patens HOM05D004281 ORTHO05D004839 1.3e-56 223.8 158 70.3
ClCG08G010210 Citrullus lanatus HOM05D004281 ORTHO05D004839 6.5e-56 221.5 139 76.3
Lj4A426G8 Lonicera japonica HOM05D004281 ORTHO05D004839 6.5e-56 221.5 127 85.8
QL10p064677 Quercus lobata HOM05D004281 ORTHO05D004839 1.4e-55 220.3 139 78.4
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 2.5e-55 219.5 133 81.2
RcHm_v2.0_Chr7g0227511 Rosa chinensis HOM05D004281 ORTHO05D004839 2.1e-54 216.5 132 78.8
ATR0743G183 Amborella trichopoda HOM05D004281 ORTHO05D004839 1.8e-53 213.4 127 83.5
Mapoly0120s0006 Marchantia polymorpha HOM05D004281 ORTHO05D004839 2.3e-53 213.0 162 64.8
TPR.G18090 Trifolium pratense HOM05D004281 ORTHO05D004839 2.2e-51 206.5 161 69.6
BcaB01g03343 Brassica carinata HOM05D001249 ORTHO05D003440 3.5e-49 199.1 166 63.9
Sc13g0007610 Simmondsia chinensis HOM05D004281 ORTHO05D004839 5.9e-49 198.4 159 67.9
Nitab4.5_0010298g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 8.5e-48 194.5 205 53.7
CBR_g29269 Chara braunii HOM05D004281 ORTHO05D004839 1.9e-47 193.4 141 65.2
QL08p018116 Quercus lobata HOM05D004281 ORTHO05D004839 1.9e-47 193.4 138 74.6
MBI07_g44299_MAGBIO Magnolia biondii HOM05D004281 ORTHO05D004839 1.2e-46 190.7 162 65.4
Nitab4.5_0004802g0010 Nicotiana tabacum HOM05D004281 ORTHO05D004839 1.6e-46 190.3 160 60.0
Duzib212G0492 Durio zibethinus HOM05D004281 ORTHO05D004839 1.0e-45 187.6 156 66.7
Cre02.g088850 Chlamydomonas reinhardtii HOM05D004281 ORTHO05D004839 2.0e-44 183.3 145 62.1
unitig_85.g27225 Utricularia gibba HOM05D004281 ORTHO05D004839 5.7e-44 181.8 106 84.0
Hund22685 Selenicereus undatus HOM05D001165 ORTHO05D004839 6.3e-43 178.3 115 73.0
RcHm_v2.0_Chr7g0214271 Rosa chinensis HOM05D004281 ORTHO05D004839 3.5e-41 172.6 97 82.5
Nitab4.5_0000013g0020 Nicotiana tabacum HOM05D004281 ORTHO05D004839 2.6e-36 156.4 159 56.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 5.7e-36 155.2 150 52.0
Duzib093G0607 Durio zibethinus HOM05D004281 ORTHO05D004839 7.0e-34 148.3 118 69.5
Cc00_g12430 Coffea canephora HOM05D004281 ORTHO05D004839 3.5e-33 146.0 77 90.9
CSS0012879 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.0e-32 144.4 210 45.7
Ca_28575_v3 Cicer arietinum L. HOM05D004281 ORTHO05D004839 1.7e-32 143.7 145 51.0
CSS0034557 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 2.9e-32 142.9 220 46.8
CSS0024434 Camellia sinensis var. sinensis HOM05D004281 ORTHO05D004839 1.9e-31 140.2 175 49.7
Lj5A837G66 Lonicera japonica HOM05D004281 ORTHO05D004839 2.5e-31 139.8 74 89.2
Cc00_g08810 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-30 137.1 77 83.1
Cc00_g23590 Coffea canephora HOM05D004281 ORTHO05D004839 1.3e-27 127.5 111 65.8
Cc00_g34060 Coffea canephora HOM05D004281 ORTHO05D004839 2.0e-25 120.2 71 80.3
C08p46660 Brassica napus HOM05D004281 ORTHO05D004839 2.1e-22 110.2 94 58.5
BolC8t52208H Brassica oleracea HOM05D004281 ORTHO05D004839 1.2e-20 104.4 113 51.3
C05p19750 Brassica napus HOM05D004281 ORTHO05D004839 1.5e-20 104.0 92 56.5
TAR362G0423 Trochodendron aralioides HOM05D004281 ORTHO05D004839 7.5e-20 101.7 72 73.6
QL08p018107 Quercus lobata HOM05D004281 ORTHO05D004839 9.2e-18 94.7 47 91.5
BcaC05g25876 Brassica carinata HOM05D004281 ORTHO05D004839 1.5e-15 87.4 70 58.6
Cc00_g15810 Coffea canephora HOM05D004281 ORTHO05D004839 9.5e-15 84.7 43 88.4
Cc00_g15820 Coffea canephora HOM05D004281 ORTHO05D004839 1.6e-14 84.0 130 43.1
Cc05_g00900 Coffea canephora HOM05D004281 ORTHO05D004839 1.8e-13 80.5 42 88.1
Cc00_g25460 Coffea canephora HOM05D004281 ORTHO05D004839 2.3e-13 80.1 42 85.7
Lsat_1_v5_gn_8_13760 Lactuca sativa HOM05D004281 ORTHO05D004839 2.0e-12 77.0 124 42.7
Actinidia34560 Actinidia chinensis HOM05D028692 ORTHO05D015213 2.7e-09 66.6 38 73.7
Cc05_g01000 Coffea canephora HOM05D004281 ORTHO05D004839 3.9e-08 62.8 32 93.8
Cfa027194 Carpinus fangiana HOM05D004281 ORTHO05D004839 1.1e-07 61.2 96 34.4
Cc00_g07230 Coffea canephora HOM05D004281 ORTHO05D004839 7.3e-07 58.5 40 77.5
Cc00_g07240 Coffea canephora HOM05D004281 ORTHO05D004839 7.3e-07 58.5 40 77.5


User provided reference genes

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