Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.2e-186 656.4 325 100.0
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 2.5e-157 558.9 323 85.8
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 2.3e-150 535.8 362 76.0
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 5.7e-125 451.4 308 73.1
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 8.2e-124 447.6 324 69.4
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 9.1e-123 444.1 274 77.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 2.0e-122 443.0 283 75.3
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 2.7e-122 442.6 283 75.3
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 7.7e-122 441.0 314 69.4
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 1.3e-121 440.3 293 74.4
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 2.2e-121 439.5 329 68.1
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 8.5e-121 437.6 298 73.2
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 1.5e-120 436.8 281 75.1
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.9e-120 436.4 274 75.9
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.9e-120 436.4 274 76.3
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.9e-120 436.4 310 70.6
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 3.2e-120 435.6 274 76.3
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 4.2e-120 435.3 279 73.8
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 5.5e-120 434.9 297 73.7
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 9.4e-120 434.1 279 74.9
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 2.1e-119 433.0 314 68.2
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.7e-119 432.6 283 73.9
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 4.7e-119 431.8 298 71.8
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.7e-119 431.8 274 75.2
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.7e-119 431.8 276 74.6
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.0e-118 430.6 279 74.2
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.4e-118 430.3 298 70.8
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 1.4e-118 430.3 279 73.8
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.8e-118 429.9 298 70.8
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 3.0e-118 429.1 308 68.8
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 3.0e-118 429.1 288 73.6
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 5.2e-118 428.3 313 69.3
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 5.2e-118 428.3 301 69.8
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 6.8e-118 427.9 305 69.5
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 1.2e-117 427.2 277 73.6
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 1.5e-117 426.8 314 67.5
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 1.5e-117 426.8 279 72.4
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 1.5e-117 426.8 281 72.2
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 2.0e-117 426.4 278 74.1
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.0e-117 426.4 275 74.2
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 2.0e-117 426.4 281 72.2
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.6e-117 426.0 284 72.5
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 5.7e-117 424.9 296 70.3
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 5.7e-117 424.9 273 74.4
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 1.3e-116 423.7 286 72.4
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 2.2e-116 422.9 281 74.4
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 2.8e-116 422.5 276 72.8
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 3.7e-116 422.2 308 67.5
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 3.7e-116 422.2 282 71.6
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 4.8e-116 421.8 307 66.8
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 6.3e-116 421.4 282 71.6
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 6.3e-116 421.4 282 71.6
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 6.3e-116 421.4 307 66.8
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 6.3e-116 421.4 307 66.8
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 6.3e-116 421.4 295 69.8
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 8.3e-116 421.0 309 67.3
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 8.3e-116 421.0 281 72.2
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 8.3e-116 421.0 279 73.1
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 1.1e-115 420.6 273 72.9
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 1.1e-115 420.6 282 70.9
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.4e-115 420.2 307 67.1
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 1.4e-115 420.2 281 72.2
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 1.8e-115 419.9 301 68.1
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.4e-115 419.5 287 71.1
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.1e-115 418.7 307 66.8
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.1e-115 418.7 282 72.0
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 7.0e-115 417.9 313 65.5
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 9.1e-115 417.5 273 72.5
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.0e-114 416.4 287 70.7
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 3.5e-114 415.6 305 65.9
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 4.5e-114 415.2 273 72.2
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 4.5e-114 415.2 274 72.6
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 5.9e-114 414.8 279 71.7
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 5.9e-114 414.8 337 62.6
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 7.7e-114 414.5 301 66.8
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 7.7e-114 414.5 286 70.3
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 7.7e-114 414.5 285 70.2
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 1.0e-113 414.1 307 65.1
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.0e-113 414.1 314 64.6
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.0e-113 414.1 273 71.4
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.0e-113 414.1 281 70.8
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 1.7e-113 413.3 305 65.6
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.7e-113 413.3 286 70.6
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 1.7e-113 413.3 284 70.1
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 2.9e-113 412.5 273 71.8
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 5.0e-113 411.8 269 74.0
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 6.5e-113 411.4 278 70.9
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 6.5e-113 411.4 329 63.8
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 8.5e-113 411.0 278 70.9
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 1.1e-112 410.6 282 70.2
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 1.5e-112 410.2 279 70.6
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 1.9e-112 409.8 298 66.8
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.9e-112 409.8 274 71.9
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.9e-112 409.8 285 69.8
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.9e-112 409.8 284 69.7
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 2.5e-112 409.5 282 70.9
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 3.2e-112 409.1 274 71.2
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.2e-112 408.7 281 69.8
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 5.5e-112 408.3 279 70.6
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.2e-111 407.1 279 70.6
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.7e-111 406.0 286 69.9
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 3.6e-111 405.6 283 68.6
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 4.7e-111 405.2 279 69.9
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 6.1e-111 404.8 271 71.6
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 1.4e-110 403.7 290 67.9
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 1.8e-110 403.3 279 69.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 2.0e-109 399.8 294 63.6
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 2.0e-109 399.8 271 70.5
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 3.4e-109 399.1 277 69.3
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 7.5e-109 397.9 281 69.0
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 3.7e-108 395.6 281 68.3
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 6.3e-108 394.8 277 68.2
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 1.1e-107 394.0 272 69.9
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 7.0e-107 391.3 269 69.1
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 9.2e-107 391.0 281 68.3
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 9.2e-107 391.0 312 63.1
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 2.0e-106 389.8 262 71.0
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 2.7e-106 389.4 277 67.5
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 5.9e-106 388.3 271 69.7
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.3e-105 386.3 284 66.5
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 8.6e-105 384.4 282 66.7
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 7.3e-104 381.3 280 64.3
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 2.8e-103 379.4 267 69.7
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 6.1e-103 378.3 268 69.0
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 4.0e-102 375.6 270 70.4
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 8.9e-102 374.4 272 67.3
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 5.7e-101 371.7 326 58.9
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 2.2e-100 369.8 309 61.5
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 4.9e-100 368.6 281 65.1
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 1.4e-99 367.1 279 64.9
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 1.7e-97 360.1 320 56.9
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 1.5e-96 357.1 281 63.0
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.9e-96 356.7 260 65.8
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 4.3e-96 355.5 283 60.1
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 5.6e-96 355.1 306 59.5
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 3.1e-94 349.4 251 69.7
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 1.5e-88 330.5 274 57.7
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 1.5e-88 330.5 235 68.9
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 4.4e-85 318.9 272 59.2
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 5.8e-85 318.5 276 56.5
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 1.5e-80 303.9 292 54.8
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 3.3e-80 302.8 183 78.7
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 1.2e-77 294.3 195 73.3
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 3.8e-76 289.3 281 53.0
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.9e-73 279.3 280 49.3
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 5.6e-72 275.4 185 73.0
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 8.1e-71 271.6 180 73.9
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 6.4e-68 261.9 289 50.9
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 8.1e-63 245.0 246 56.9
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 1.3e-60 237.7 215 58.1
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 1.1e-59 234.6 173 68.2
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 3.1e-54 216.5 219 55.7
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 4.6e-50 202.6 156 65.4
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 3.0e-49 199.9 286 44.1
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 6.7e-49 198.7 120 78.3
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 5.6e-48 195.7 161 59.6
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 6.2e-47 192.2 174 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 5.1e-41 172.6 182 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.6e-34 149.4 134 56.0
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 2.2e-31 140.6 281 32.4
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 1.1e-30 138.3 87 69.0
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 5.5e-27 125.9 74 75.7
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 4.6e-26 122.9 75 78.7
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 2.0e-24 117.5 71 80.3
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 9.7e-24 115.2 89 61.8
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 7.7e-21 105.5 152 42.1
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.7e-18 96.3 120 45.0
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 7.4e-16 89.0 66 72.7
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.7e-13 79.0 82 53.7
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 3.0e-09 67.0 86 43.0
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 5.2e-09 66.2 191 27.7


User provided reference genes

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