Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G145400 Populus trichocarpa HOM05D007315 ORTHO05D008940 0.0e+00 1378.2 698 100.0
Sabra07G0115600 Salix brachista HOM05D007315 ORTHO05D008940 0.0e+00 1194.1 698 89.4
Potri.017G002200 Populus trichocarpa HOM05D007315 ORTHO05D008940 2.1e-294 1015.4 702 78.1
Sabra17G0006200 Salix brachista HOM05D007315 ORTHO05D008940 3.5e-281 971.5 700 74.7
Manes.05G207100 Manihot esculenta HOM05D007315 ORTHO05D008940 1.4e-173 614.0 708 54.9
QL10p064604 Quercus lobata HOM05D007315 ORTHO05D008940 4.0e-160 569.3 697 52.5
QL10p065726 Quercus lobata HOM05D007315 ORTHO05D008940 1.9e-157 560.5 730 51.0
Cfa008519 Carpinus fangiana HOM05D007315 ORTHO05D008940 2.7e-148 530.0 705 48.9
Ciclev10019166m.g Citrus clementina HOM05D007315 ORTHO05D008940 2.0e-143 513.8 726 47.9
Haze_11126 Corylus avellana HOM05D007315 ORTHO05D008940 7.6e-143 511.9 723 48.4
TWI15G1252 Tripterygium wilfordii HOM05D007315 ORTHO05D008940 9.7e-138 495.0 719 47.6
Atru.chr3.1974 Acer truncatum HOM05D007315 ORTHO05D008940 7.7e-135 485.3 706 48.2
CiPaw.02G125100 Carya illinoinensis HOM05D007315 ORTHO05D008940 2.5e-133 480.3 698 48.4
GSVIVG01038254001 Vitis vinifera HOM05D007315 ORTHO05D008940 1.4e-123 448.0 701 46.6
RcHm_v2.0_Chr2g0084511 Rosa chinensis HOM05D007315 ORTHO05D008940 1.1e-120 438.3 692 44.7
Dinv33248 Davidia involucrata HOM05D007315 ORTHO05D008940 1.6e-119 434.5 684 45.5
Cpa.g.sc151.10 Carica papaya HOM05D007315 ORTHO05D008940 6.5e-118 429.1 663 45.9
Prupe.7G270200 Prunus persica HOM05D007315 ORTHO05D008940 5.5e-117 426.0 699 44.5
CANSAT78G2341 Cannabis sativa HOM05D007315 ORTHO05D008940 1.5e-114 417.9 684 44.6
FAN26G2088 Fragaria x ananassa HOM05D007315 ORTHO05D008940 7.2e-109 399.1 674 43.6
FAN26G2097 Fragaria x ananassa HOM05D007315 ORTHO05D008940 7.2e-109 399.1 674 43.6
MD15G1142800 Malus domestica HOM05D007315 ORTHO05D008940 4.7e-108 396.4 727 42.8
FAN23G0376 Fragaria x ananassa HOM05D007315 ORTHO05D008940 2.3e-107 394.0 695 42.3
Rhsim09G0003400 Rhododendron simsii HOM05D007315 ORTHO05D008940 6.8e-107 392.5 666 42.2
FAN28G1745 Fragaria x ananassa HOM05D007315 ORTHO05D008940 3.4e-106 390.2 669 42.9
Duzib128G0490 Durio zibethinus HOM05D007315 ORTHO05D008940 8.3e-105 385.6 678 42.9
Nn1g09432 Nelumbo nucifera HOM05D007315 ORTHO05D008940 3.8e-102 376.7 757 38.3
CsaV3_2G011220 Cucumis sativus L. HOM05D007315 ORTHO05D008940 1.1e-101 375.2 699 40.2
ClCG06G009750 Citrullus lanatus HOM05D007315 ORTHO05D008940 1.2e-100 371.7 712 41.7
Sed0008861 Sechium edule HOM05D007315 ORTHO05D008940 6.1e-100 369.4 692 40.6
Thecc.05G001400 Theobroma cacao HOM05D007315 ORTHO05D008940 1.4e-99 368.2 719 41.2
MELO3C020340.2 Cucumis melo HOM05D007315 ORTHO05D008940 1.8e-99 367.9 676 40.7
Eucgr.A00422 Eucalyptus grandis HOM05D007315 ORTHO05D008940 1.3e-97 361.7 666 40.8
CiPaw.01G202000 Carya illinoinensis HOM05D007315 ORTHO05D008940 2.2e-97 360.9 719 41.4
FvH4_1g00220 Fragaria vesca HOM05D007315 ORTHO05D008940 2.2e-97 360.9 669 41.3
CSS0005699 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.1e-96 358.6 590 41.5
DCAR_027494 Daucus carota HOM05D007315 ORTHO05D008940 1.3e-94 351.7 688 38.5
Glyma.10G188000 Glycine max HOM05D007315 ORTHO05D008940 1.2e-90 338.6 732 38.5
Atru.chr3.1981 Acer truncatum HOM05D007315 ORTHO05D008940 7.5e-90 335.9 470 48.5
Gorai.011G004300 Gossypium raimondii HOM05D007315 ORTHO05D008940 7.5e-90 335.9 650 38.6
Lj5g0028022 Lotus japonicus HOM05D007315 ORTHO05D008940 2.9e-89 334.0 691 39.5
Gohir.D10G003900 Gossypium hirsutum HOM05D007315 ORTHO05D008940 8.3e-89 332.4 731 38.3
TAR362G0103 Trochodendron aralioides HOM05D007315 ORTHO05D008940 1.8e-88 331.3 673 37.6
Gohir.A10G003901 Gossypium hirsutum HOM05D007315 ORTHO05D008940 2.0e-87 327.8 730 37.0
COL.COLO4_23477 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.5e-85 321.6 522 45.0
Glyma.20G202800 Glycine max HOM05D007315 ORTHO05D008940 5.6e-85 319.7 724 38.0
AUR62002486 Chenopodium quinoa HOM05D007315 ORTHO05D008940 2.6e-82 310.8 667 38.5
THA.LOC104804323 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 9.8e-82 308.9 726 35.1
Phvul.007G128900 Phaseolus vulgaris HOM05D007315 ORTHO05D008940 3.2e-80 303.9 680 38.5
VMungo0720G0938 Vigna mungo HOM05D007315 ORTHO05D008940 1.2e-79 302.0 686 37.6
Lalb_Chr02g0150561 Lupinus albus HOM05D007315 ORTHO05D008940 6.0e-79 299.7 734 39.1
CSS0008240 Camellia sinensis var. sinensis HOM05D007315 ORTHO05D008940 1.7e-78 298.1 599 38.2
PGR042G2132 Punica granatum HOM05D007315 ORTHO05D008940 8.6e-78 295.8 726 35.7
THA.LOC104802348 Tarenaya hassleriana HOM05D007315 ORTHO05D008940 1.1e-77 295.4 711 35.3
Ca_09817_v3 Cicer arietinum L. HOM05D007315 ORTHO05D008940 1.5e-77 295.0 723 37.2
PGSC0003DMG400020383 Solanum tuberosum HOM05D007315 ORTHO05D008940 1.5e-77 295.0 686 37.6
TPR.G26430 Trifolium pratense HOM05D007315 ORTHO05D008940 7.3e-77 292.7 720 38.9
Hma1.2p1_1085F.1_g255400 Hydrangea macrophylla HOM05D007315 ORTHO05D008940 3.1e-75 287.3 464 44.6
Medtr1g073930 Medicago truncatula HOM05D007315 ORTHO05D008940 4.0e-75 287.0 705 38.0
EL10Ac3g06171 Beta vulgaris HOM05D007315 ORTHO05D008940 8.9e-75 285.8 699 35.1
AT2G43990 Arabidopsis thaliana HOM05D007315 ORTHO05D008940 9.8e-74 282.3 718 34.7
Peaxi162Scf00057g00225 Petunia axillaris HOM05D007315 ORTHO05D008940 2.2e-73 281.2 700 35.6
AUR62023706 Chenopodium quinoa HOM05D007315 ORTHO05D008940 4.9e-73 280.0 649 37.0
Sopen12g009190 Solanum pennellii HOM05D007315 ORTHO05D008940 4.9e-73 280.0 686 36.4
MD00G1086900 Malus domestica HOM05D007315 ORTHO05D008940 1.1e-72 278.9 605 40.8
Nitab4.5_0000160g0040 Nicotiana tabacum HOM05D007315 ORTHO05D008940 1.4e-72 278.5 616 38.3
Psat6g133000 Pisum sativum HOM05D007315 ORTHO05D008940 5.4e-72 276.6 678 37.5
Nitab4.5_0002789g0030 Nicotiana tabacum HOM05D007315 ORTHO05D008940 2.7e-71 274.2 603 38.6
Carub.0004s2655 Capsella rubella HOM05D007315 ORTHO05D008940 7.8e-71 272.7 714 33.5
Solyc12g017970.1 Solanum lycopersicum HOM05D007315 ORTHO05D008940 2.3e-70 271.2 686 36.0
Oeu018063.1 Olea europaea HOM05D007315 ORTHO05D008940 2.8e-68 264.2 592 35.6
ECA238G3268 Erigeron canadensis HOM05D007315 ORTHO05D008940 6.2e-68 263.1 474 37.1
Sp4g26080 Schrenkiella parvula HOM05D007315 ORTHO05D008940 2.0e-66 258.1 691 33.7
arahy.Tifrunner.gnm1.ann1.K0K7GF Arachis hypogaea HOM05D007315 ORTHO05D008940 4.4e-66 256.9 744 35.1
AL4G42870 Arabidopsis lyrata HOM05D007315 ORTHO05D008940 3.2e-64 250.8 711 33.2
Thhalv10001359m.g Eutrema salsugineum HOM05D007315 ORTHO05D008940 1.1e-61 242.3 684 34.6
CARHR139160 Cardamine hirsuta HOM05D007315 ORTHO05D008940 1.6e-60 238.4 701 33.5
MSTRG.24547 Avicennia marina HOM05D007315 ORTHO05D008940 2.8e-60 237.7 736 33.2
PSO732G0261 Papaver somniferum HOM05D007315 ORTHO05D008940 6.2e-60 236.5 515 36.3
Ah.07g203260 Amaranthus hybridus HOM05D007315 ORTHO05D008940 7.6e-58 229.6 576 34.5
MBI07_g42068_MAGBIO Magnolia biondii HOM05D007315 ORTHO05D008940 2.2e-57 228.0 548 36.5
COL.COLO4_20289 Corchorus olitorius HOM05D007315 ORTHO05D008940 1.1e-56 225.7 283 50.2
QL10p064445 Quercus lobata HOM05D007315 ORTHO05D008940 3.2e-56 224.2 402 45.0
arahy.Tifrunner.gnm1.ann1.BRX18T Arachis hypogaea HOM05D007315 ORTHO05D008940 2.1e-55 221.5 698 34.1
Ah.13g073150 Amaranthus hybridus HOM05D007315 ORTHO05D008940 1.7e-54 218.4 668 32.9
HanXRQChr14g0438301 Helianthus annuus HOM05D007315 ORTHO05D008940 1.1e-53 215.7 490 34.5
Aqoxy5G03722 Aquilegia oxysepala HOM05D007315 ORTHO05D008940 8.7e-46 189.5 748 28.3
Sc19g0002390 Simmondsia chinensis HOM05D007315 ORTHO05D008940 2.5e-45 188.0 676 32.0
Migut.N03024 Erythranthe guttata HOM05D007315 ORTHO05D008940 1.8e-43 181.8 614 30.8
A05p04140 Brassica napus HOM05D007315 ORTHO05D008940 9.9e-42 176.0 701 30.5
SalBow3G0669 Salvia bowleyana HOM05D007315 ORTHO05D008940 2.4e-40 171.4 686 29.9
CDE04G0399 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 7.9e-39 166.4 469 32.6
C04p04910 Brassica napus HOM05D007315 ORTHO05D008940 6.7e-38 163.3 598 30.6
BraA05t19400Z Brassica rapa HOM05D007315 ORTHO05D008940 6.7e-38 163.3 696 29.6
BolC4t22121H Brassica oleracea HOM05D007315 ORTHO05D008940 8.7e-38 162.9 685 30.2
CDE07G0865 Ceratophyllum demersum HOM05D007315 ORTHO05D008940 9.6e-37 159.5 704 30.1
SGA_v2.0_scaffold25G11016 Striga asiatica HOM05D007315 ORTHO05D008940 1.8e-35 155.2 703 27.3
SGA_v2.0_scaffold19G08894 Striga asiatica HOM05D007315 ORTHO05D008940 2.1e-31 141.7 687 27.8
Os11g0247500 Oryza sativa ssp. japonica HOM05D019859 ORTHO05D008940 4.6e-31 140.6 475 30.9
Zm00001eb434100 Zea mays HOM05D019859 ORTHO05D008940 1.3e-30 139.0 512 31.2
BcaC02g12347 Brassica carinata HOM05D007315 ORTHO05D008940 6.3e-28 130.2 465 30.8
HPP92_007592 Vanilla planifolia HOM05D007315 ORTHO05D008940 5.9e-26 123.6 466 30.3
Zm00001eb136730 Zea mays HOM05D019859 ORTHO05D008940 7.4e-21 106.7 419 30.5
Duzib093G0367 Durio zibethinus HOM05D007315 ORTHO05D008940 1.8e-19 102.1 531 29.0
ATR0743G232 Amborella trichopoda HOM05D007315 ORTHO05D008940 1.4e-16 92.4 261 31.8
Actinidia39246 Actinidia chinensis HOM05D007315 ORTHO05D008940 4.6e-15 87.4 292 31.8
unitig_578.g16246 Utricularia gibba HOM05D007315 ORTHO05D008940 2.2e-12 78.6 217 32.3
Zm00001eb317370 Zea mays HOM05D019859 ORTHO05D008940 5.0e-09 67.4 106 35.8
Zm00001eb442140 Zea mays HOM05D019859 ORTHO05D008940 5.0e-09 67.4 106 35.8
SEGI_20190 Sequoiadendron giganteum HOM05D007315 ORTHO05D008940 6.5e-09 67.0 188 30.9


User provided reference genes

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