Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 4.0e-284 980.7 475 100.0
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 5.8e-235 817.4 487 83.6
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 2.3e-223 778.9 544 74.3
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 1.5e-161 573.5 469 63.1
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 3.7e-149 532.3 490 56.3
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 1.0e-146 524.2 481 58.2
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 2.3e-146 523.1 482 57.5
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 5.0e-146 521.9 507 54.4
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.8e-144 516.2 480 55.8
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 4.7e-144 515.4 492 54.7
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.6e-142 509.6 515 53.4
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 1.3e-141 507.3 508 52.2
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 1.3e-141 507.3 508 52.8
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 6.4e-141 505.0 524 51.3
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 4.7e-136 488.8 497 52.5
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 6.2e-136 488.4 501 52.7
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 2.3e-135 486.5 463 53.8
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 2.0e-134 483.4 493 51.7
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 2.6e-134 483.0 523 50.7
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 4.4e-134 482.3 516 52.5
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 7.5e-134 481.5 518 50.6
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 3.7e-133 479.2 519 48.9
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 4.9e-133 478.8 495 52.1
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.7e-130 470.3 513 50.5
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 6.6e-130 468.4 489 51.9
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 8.6e-130 468.0 510 50.4
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 9.5e-129 464.5 461 51.2
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 2.1e-128 463.4 500 49.2
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 4.7e-128 462.2 468 51.7
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 6.2e-128 461.8 499 50.1
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 2.0e-126 456.8 452 51.8
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.6e-126 456.4 492 49.4
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 3.4e-126 456.1 485 48.9
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 7.5e-126 454.9 510 49.0
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 9.9e-126 454.5 499 47.1
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 1.7e-125 453.8 497 49.1
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.2e-125 453.4 488 48.8
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 2.9e-125 453.0 458 49.8
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 4.9e-125 452.2 463 49.2
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 1.1e-124 451.1 483 51.6
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.9e-124 450.3 503 47.9
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 3.2e-124 449.5 487 48.7
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 5.4e-124 448.7 476 47.7
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 2.7e-123 446.4 479 47.4
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 1.0e-122 444.5 513 47.6
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.3e-122 444.1 512 47.1
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 3.0e-122 443.0 487 45.8
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 8.6e-122 441.4 527 46.7
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.5e-121 440.7 466 46.8
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.9e-121 440.3 474 49.2
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 2.5e-121 439.9 518 46.7
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 2.5e-121 439.9 489 50.5
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 3.3e-121 439.5 498 48.8
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.3e-121 439.1 473 47.6
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 1.2e-120 437.6 455 49.5
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 2.1e-120 436.8 471 46.3
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 2.1e-120 436.8 491 46.4
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 2.8e-120 436.4 491 46.2
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 2.8e-120 436.4 477 45.9
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 6.2e-120 435.3 520 46.0
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.4e-119 433.3 444 50.9
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 8.9e-119 431.4 487 45.8
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 3.4e-118 429.5 515 48.0
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 7.6e-118 428.3 488 48.2
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 9.9e-118 427.9 498 45.6
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.7e-117 427.2 560 44.5
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.7e-117 427.2 466 46.8
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 1.7e-117 427.2 475 48.2
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 2.2e-117 426.8 459 47.5
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 2.9e-117 426.4 459 48.1
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 3.8e-117 426.0 458 47.6
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 3.8e-117 426.0 494 47.8
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.9e-116 423.7 472 47.5
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 5.4e-116 422.2 455 47.0
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 2.1e-115 420.2 487 46.2
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 7.8e-115 418.3 489 46.8
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.3e-114 417.5 489 49.5
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.3e-114 417.5 510 46.5
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 2.3e-114 416.8 568 43.5
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 6.2e-112 408.7 517 44.9
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 1.5e-110 404.1 430 48.6
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-108 397.1 539 43.4
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-108 397.1 539 43.4
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.2e-108 396.4 514 43.0
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 3.2e-108 396.4 514 43.0
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 4.2e-108 396.0 477 43.4
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 2.1e-107 393.7 524 44.5
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 7.8e-107 391.7 450 44.9
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 6.6e-106 388.7 477 43.6
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 8.7e-106 388.3 504 43.7
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 1.6e-104 384.0 559 41.7
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 5.3e-103 379.0 495 44.0
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.6e-102 376.7 361 55.4
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.4e-102 376.3 517 42.2
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.1e-95 354.8 531 41.4
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 1.2e-94 351.3 505 40.6
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 7.6e-94 348.6 443 44.7
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 4.6e-91 339.3 489 42.3
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 1.1e-89 334.7 458 42.4
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.9e-89 334.0 479 38.8
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 4.3e-89 332.8 474 40.9
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 1.4e-84 317.8 477 42.3
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 4.6e-83 312.8 417 40.8
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.1e-81 308.1 452 40.5
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 2.8e-80 303.5 557 36.1
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 4.8e-80 302.8 345 48.7
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.1e-79 301.6 382 42.9
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 2.4e-79 300.4 382 43.5
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 9.0e-79 298.5 502 37.3
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 3.8e-77 293.1 420 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 2.5e-76 290.4 460 37.8
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.1e-71 273.5 355 45.1
RcHm_v2.0_Chr2g0084521 Rosa chinensis HOM05D003812 ORTHO05D004393 5.9e-70 269.2 264 53.0
AUR62002481 Chenopodium quinoa HOM05D003812 ORTHO05D004393 8.5e-69 265.4 347 45.5
FAN23G1808 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.8e-63 247.7 282 47.9
Ah.13g073180 Amaranthus hybridus HOM05D003812 ORTHO05D004393 2.0e-62 244.2 251 50.6
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.0e-57 227.6 290 41.7
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 2.2e-56 224.2 233 52.4
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 4.8e-56 223.0 286 43.0
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.7e-53 214.5 267 47.6
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 3.8e-53 213.4 237 49.8
Lalb_Chr05g0212031 Lupinus albus HOM05D003812 ORTHO05D004393 3.8e-53 213.4 240 49.2
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.6e-49 200.7 242 47.1
Haze_11132 Corylus avellana HOM05D003812 ORTHO05D004393 4.4e-49 199.9 260 45.8
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 2.8e-48 197.2 268 43.3
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 4.8e-48 196.4 220 50.5
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 7.0e-47 192.6 224 44.2
Carub.0005s1565 Capsella rubella HOM05D003812 ORTHO05D004393 4.5e-46 189.9 205 46.8
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.2e-45 187.6 240 46.7
Hma1.2p1_0381F.1_g140060 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 2.1e-43 181.0 159 54.7
Cc06_g19240 Coffea canephora HOM05D003812 ORTHO05D004393 8.0e-43 179.1 134 64.2
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 4.5e-38 163.3 215 44.2
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.5e-36 158.3 183 48.6
TAR636G0254 Trochodendron aralioides HOM05D003812 ORTHO05D004393 4.2e-36 156.8 166 48.8
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 3.0e-34 150.6 147 51.0
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 3.4e-33 147.1 321 33.6
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 1.3e-32 145.2 125 56.8
Oeu022463.3 Olea europaea HOM05D003812 ORTHO05D004393 1.4e-31 141.7 290 35.2
HanXRQChr17g0553321 Helianthus annuus HOM05D003812 ORTHO05D004393 7.0e-31 139.4 132 55.3
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 3.8e-29 133.7 183 42.6
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.2e-27 128.6 165 46.1
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.0e-27 125.9 183 39.3
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.4e-26 125.2 183 39.9
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 2.3e-26 124.4 187 40.1
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 8.9e-26 122.5 183 38.8
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.4e-25 120.2 183 38.8
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.4e-25 120.2 183 38.8
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 4.4e-25 120.2 183 38.8
Sc13g0007560 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.4e-23 115.2 114 50.9
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 3.0e-21 107.5 100 55.0
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 6.6e-21 106.3 633 20.9
arahy.Tifrunner.gnm1.ann1.NBB910 Arachis hypogaea HOM05D003812 ORTHO05D004393 8.6e-21 105.9 103 51.5
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.9e-20 104.8 185 35.7
arahy.Tifrunner.gnm1.ann1.C22IND Arachis hypogaea HOM05D003812 ORTHO05D004393 2.5e-20 104.4 98 52.0
Os01g0528000 Oryza sativa ssp. japonica HOM05D003812 ORTHO05D004393 3.3e-20 104.0 119 47.9
arahy.Tifrunner.gnm1.ann1.WBRQ5K Arachis hypogaea HOM05D003812 ORTHO05D004393 7.3e-20 102.8 103 50.5
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.4e-15 88.6 79 53.2
ATR0580G030 Amborella trichopoda HOM05D003812 ORTHO05D004393 3.2e-15 87.4 170 34.7
Hund12301 Selenicereus undatus HOM05D003812 ORTHO05D004393 7.0e-15 86.3 113 39.8
arahy.Tifrunner.gnm1.ann1.8MB3N8 Arachis hypogaea HOM05D003812 ORTHO05D004393 3.3e-12 77.4 83 49.4
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.2e-11 75.5 76 43.4
arahy.Tifrunner.gnm1.ann1.SF8VIF Arachis hypogaea HOM05D003812 ORTHO05D004393 2.8e-11 74.3 87 44.8
SEGI_01468 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 2.8e-11 74.3 68 44.1
vmacro06690 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 1.8e-10 71.6 45 71.1
FAN20G1426 Fragaria x ananassa HOM05D003812 ORTHO05D004393 6.8e-10 69.7 97 49.5
FvH4_2g23680 Fragaria vesca HOM05D003812 ORTHO05D004393 4.9e-08 63.5 98 45.9
SEGI_03594 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 1.9e-07 61.6 45 64.4
Sc25g0002350 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.2e-06 58.9 44 59.1
Cc00_g35850 Coffea canephora HOM05D003812 ORTHO05D004393 3.5e-06 57.4 127 34.6
Nn1g08161 Nelumbo nucifera HOM05D003812 ORTHO05D004393 3.5e-06 57.4 103 35.9


User provided reference genes

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