Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G144900 Populus trichocarpa HOM05D004821 ORTHO05D005711 4.9e-172 607.8 335 100.0
Sabra07G0115900 Salix brachista HOM05D004821 ORTHO05D005711 6.4e-164 580.9 335 95.2
Potri.017G007300 Populus trichocarpa HOM05D004821 ORTHO05D005711 9.3e-147 523.9 295 87.8
Sabra17G0008100 Salix brachista HOM05D004821 ORTHO05D005711 9.6e-144 513.8 296 86.1
Ciclev10021021m.g Citrus clementina HOM05D004821 ORTHO05D005711 1.0e-137 493.8 291 79.4
Manes.01G010100 Manihot esculenta HOM05D004821 ORTHO05D005711 1.0e-137 493.8 291 80.1
PGR042G3220 Punica granatum HOM05D004821 ORTHO05D005711 2.0e-133 479.6 293 78.2
Cpa.g.sc151.7 Carica papaya HOM05D004821 ORTHO05D005711 1.0e-132 477.2 292 78.1
Thecc.03G204200 Theobroma cacao HOM05D004821 ORTHO05D005711 1.9e-131 473.0 294 76.2
Atru.chr3.1996 Acer truncatum HOM05D004821 ORTHO05D005711 3.2e-131 472.2 299 75.6
MD15G1143200 Malus domestica HOM05D004821 ORTHO05D005711 3.6e-130 468.8 292 75.3
Cfa008514 Carpinus fangiana HOM05D004821 ORTHO05D005711 1.4e-129 466.8 292 75.7
Haze_11130 Corylus avellana HOM05D004821 ORTHO05D005711 1.4e-129 466.8 292 75.7
arahy.Tifrunner.gnm1.ann1.PJYW2S Arachis hypogaea HOM05D004821 ORTHO05D005711 6.7e-129 464.5 294 74.5
arahy.Tifrunner.gnm1.ann1.TNA3AF Arachis hypogaea HOM05D004821 ORTHO05D005711 6.7e-129 464.5 294 74.5
RcHm_v2.0_Chr2g0084461 Rosa chinensis HOM05D004821 ORTHO05D005711 6.7e-129 464.5 299 74.2
MD00G1087400 Malus domestica HOM05D004821 ORTHO05D005711 2.0e-128 463.0 292 74.7
Prupe.7G269800 Prunus persica HOM05D004821 ORTHO05D005711 2.6e-128 462.6 292 75.0
CsaV3_6G037260 Cucumis sativus L. HOM05D004821 ORTHO05D005711 5.7e-128 461.5 293 72.7
CiPaw.01G201700 Carya illinoinensis HOM05D004821 ORTHO05D005711 9.7e-128 460.7 292 74.7
Cc03_g15980 Coffea canephora HOM05D004821 ORTHO05D005711 3.7e-127 458.8 295 74.6
CANSAT56G1350 Cannabis sativa HOM05D004821 ORTHO05D005711 4.8e-127 458.4 296 73.6
Hund22594 Selenicereus undatus HOM05D004821 ORTHO05D005711 8.2e-127 457.6 292 74.7
Actinidia18397 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.1e-126 457.2 299 73.6
Eucgr.A00428 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.1e-126 457.2 292 74.0
Nn1g09422 Nelumbo nucifera HOM05D004821 ORTHO05D005711 1.1e-126 457.2 291 73.9
COL.COLO4_16819 Corchorus olitorius HOM05D004821 ORTHO05D005711 1.4e-126 456.8 294 75.2
Peaxi162Scf00329g00933 Petunia axillaris HOM05D004821 ORTHO05D005711 1.8e-126 456.4 298 73.2
Duzib205G0343 Durio zibethinus HOM05D004821 ORTHO05D005711 9.1e-126 454.1 316 69.6
ClCG09G014480 Citrullus lanatus HOM05D004821 ORTHO05D005711 1.2e-125 453.8 293 71.7
VMungo1215G0856 Vigna mungo HOM05D004821 ORTHO05D005711 1.2e-125 453.8 302 70.5
Oeu033086.1 Olea europaea HOM05D004821 ORTHO05D005711 4.5e-125 451.8 295 73.6
Eucgr.A00426 Eucalyptus grandis HOM05D004821 ORTHO05D005711 1.0e-124 450.7 292 73.6
Gorai.007G016400 Gossypium raimondii HOM05D004821 ORTHO05D005711 1.0e-124 450.7 294 73.1
FvH4_1g00191 Fragaria vesca HOM05D004821 ORTHO05D005711 1.3e-124 450.3 299 71.6
Lj4g0002865 Lotus japonicus HOM05D004821 ORTHO05D005711 1.3e-124 450.3 292 73.3
Gohir.A11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 6.5e-124 448.0 294 72.4
Solyc04g008520.3 Solanum lycopersicum HOM05D004821 ORTHO05D005711 1.1e-123 447.2 295 71.9
Nitab4.5_0006607g0020 Nicotiana tabacum HOM05D004821 ORTHO05D005711 1.4e-123 446.8 298 71.1
QL10p064358 Quercus lobata HOM05D004821 ORTHO05D005711 1.4e-123 446.8 290 73.1
CSS0009446 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.2e-123 445.7 294 71.4
CSS0027099 Camellia sinensis var. sinensis HOM05D004821 ORTHO05D005711 3.2e-123 445.7 294 71.4
Nitab4.5_0000129g0470 Nicotiana tabacum HOM05D004821 ORTHO05D005711 7.2e-123 444.5 298 71.1
PGSC0003DMG400029438 Solanum tuberosum HOM05D004821 ORTHO05D005711 7.2e-123 444.5 296 71.6
CiPaw.02G124700 Carya illinoinensis HOM05D004821 ORTHO05D005711 9.4e-123 444.1 292 72.6
Sopen04g003670 Solanum pennellii HOM05D004821 ORTHO05D005711 9.4e-123 444.1 296 71.3
Rhsim09G0003600 Rhododendron simsii HOM05D004821 ORTHO05D005711 1.2e-122 443.7 294 71.1
Sed0001216 Sechium edule HOM05D004821 ORTHO05D005711 1.2e-122 443.7 292 71.2
Actinidia11430 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.6e-122 443.4 294 73.1
Glyma.17G000700 Glycine max HOM05D004821 ORTHO05D005711 3.6e-122 442.2 293 70.6
Psat4g001240 Pisum sativum HOM05D004821 ORTHO05D005711 4.7e-122 441.8 296 69.6
AL4G42830 Arabidopsis lyrata HOM05D004821 ORTHO05D005711 2.3e-121 439.5 296 72.0
AT2G43950 Arabidopsis thaliana HOM05D004821 ORTHO05D005711 2.3e-121 439.5 296 72.0
Ca_13543_v3 Cicer arietinum L. HOM05D004821 ORTHO05D005711 2.3e-121 439.5 300 69.0
TPR.G5989 Trifolium pratense HOM05D004821 ORTHO05D005711 2.3e-121 439.5 294 69.7
Ah.13g073170 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.0e-121 439.1 297 70.7
FAN26G2560 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.0e-121 439.1 299 69.6
FAN26G2598 Fragaria x ananassa HOM05D004821 ORTHO05D005711 3.0e-121 439.1 299 69.6
Phvul.003G074500 Phaseolus vulgaris HOM05D004821 ORTHO05D005711 6.7e-121 438.0 302 68.9
Carub.0004s2652 Capsella rubella HOM05D004821 ORTHO05D005711 1.1e-120 437.2 296 71.6
Hma1.2p1_0872F.1_g231140 Hydrangea macrophylla HOM05D004821 ORTHO05D005711 1.1e-120 437.2 292 71.2
C03p29340 Brassica napus HOM05D004821 ORTHO05D005711 1.5e-120 436.8 294 72.1
CARHR139130 Cardamine hirsuta HOM05D004821 ORTHO05D005711 2.0e-120 436.4 296 71.6
Thhalv10001539m.g Eutrema salsugineum HOM05D004821 ORTHO05D005711 3.3e-120 435.6 294 72.1
Aqoxy5G00034 Aquilegia oxysepala HOM05D004821 ORTHO05D005711 4.4e-120 435.3 296 72.0
SGA_v2.0_scaffold12G06219 Striga asiatica HOM05D004821 ORTHO05D005711 5.7e-120 434.9 293 71.0
BcaB01g03351 Brassica carinata HOM05D004821 ORTHO05D005711 7.4e-120 434.5 294 71.4
GSVIVG01038250001 Vitis vinifera HOM05D004821 ORTHO05D005711 1.3e-119 433.7 295 69.5
A03p24610 Brassica napus HOM05D004821 ORTHO05D005711 2.2e-119 433.0 294 71.4
BraA03t11666Z Brassica rapa HOM05D004821 ORTHO05D005711 2.2e-119 433.0 294 71.4
Sp4g26050 Schrenkiella parvula HOM05D004821 ORTHO05D005711 2.8e-119 432.6 294 71.4
Medtr4g134950 Medicago truncatula HOM05D004821 ORTHO05D005711 3.7e-119 432.2 298 68.5
EL10Ac3g06166 Beta vulgaris HOM05D004821 ORTHO05D005711 8.2e-119 431.0 292 69.2
Gohir.A12G247900 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.2e-119 431.0 294 68.4
Gorai.008G266600 Gossypium raimondii HOM05D004821 ORTHO05D005711 8.2e-119 431.0 294 68.4
Aa31LG1G25650 Aethionema arabicum HOM05D004821 ORTHO05D005711 1.4e-118 430.3 294 69.7
Lj6A619G67 Lonicera japonica HOM05D004821 ORTHO05D005711 1.8e-118 429.9 298 69.8
Gohir.D12G248600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 5.3e-118 428.3 294 67.7
PSO675G6376 Papaver somniferum HOM05D004821 ORTHO05D005711 5.3e-118 428.3 293 70.6
MSTRG.4551 Avicennia marina HOM05D004821 ORTHO05D005711 7.0e-118 427.9 294 69.7
BolC3t15281H Brassica oleracea HOM05D004821 ORTHO05D005711 1.2e-117 427.2 307 69.1
BcaB06g29351 Brassica carinata HOM05D004821 ORTHO05D005711 1.6e-117 426.8 298 69.8
C04p70840 Brassica napus HOM05D004821 ORTHO05D005711 1.3e-116 423.7 297 69.4
Gohir.D11G015800 Gossypium hirsutum HOM05D004821 ORTHO05D005711 1.7e-116 423.3 294 70.1
MBI10_g16333_MAGBIO Magnolia biondii HOM05D004821 ORTHO05D005711 2.2e-116 422.9 290 70.0
Thecc.05G001800 Theobroma cacao HOM05D004821 ORTHO05D005711 2.2e-116 422.9 290 69.3
A04p33140 Brassica napus HOM05D004821 ORTHO05D005711 2.9e-116 422.5 296 69.3
THA.LOC104804303 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 2.9e-116 422.5 295 68.5
BraA04t18773Z Brassica rapa HOM05D004821 ORTHO05D005711 6.5e-116 421.4 296 68.9
PSO732G0644 Papaver somniferum HOM05D004821 ORTHO05D005711 1.1e-115 420.6 287 71.1
THA.LOC104802343 Tarenaya hassleriana HOM05D004821 ORTHO05D005711 4.2e-115 418.7 294 68.4
Lsat_1_v5_gn_7_44620 Lactuca sativa HOM05D004821 ORTHO05D005711 3.6e-114 415.6 295 68.1
AUR62002483 Chenopodium quinoa HOM05D004821 ORTHO05D005711 6.1e-114 414.8 343 60.3
Migut.G00920 Erythranthe guttata HOM05D004821 ORTHO05D005711 1.0e-113 414.1 293 67.9
SalBow3G1744 Salvia bowleyana HOM05D004821 ORTHO05D005711 4.8e-111 405.2 333 60.1
BcaB06g29509 Brassica carinata HOM05D004821 ORTHO05D005711 6.3e-111 404.8 294 67.0
Lalb_Chr13g0304481 Lupinus albus HOM05D004821 ORTHO05D005711 1.8e-110 403.3 299 64.2
Gohir.D08G113600 Gossypium hirsutum HOM05D004821 ORTHO05D005711 3.5e-109 399.1 291 65.6
AUR62023709 Chenopodium quinoa HOM05D004821 ORTHO05D005711 5.9e-109 398.3 292 66.4
DCAR_029913 Daucus carota HOM05D004821 ORTHO05D005711 2.9e-108 396.0 302 62.6
Migut.N03030 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.8e-108 395.6 293 66.2
Gorai.004G122500 Gossypium raimondii HOM05D004821 ORTHO05D005711 6.5e-108 394.8 291 65.3
Gohir.A08G102400 Gossypium hirsutum HOM05D004821 ORTHO05D005711 8.5e-108 394.4 291 64.9
vmacro00722 Vaccinium macrocarpon HOM05D004821 ORTHO05D005711 1.5e-107 393.7 330 60.6
MELO3C014389.2 Cucumis melo HOM05D004821 ORTHO05D005711 4.2e-107 392.1 257 69.3
CAN.G458.7 Capsicum annuum HOM05D004821 ORTHO05D005711 1.8e-105 386.7 259 70.7
CDE02G4358 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 8.8e-105 384.4 301 60.1
Eucgr.L00828 Eucalyptus grandis HOM05D004821 ORTHO05D005711 7.5e-104 381.3 292 66.4
HanXRQChr03g0094031 Helianthus annuus HOM05D004821 ORTHO05D005711 1.8e-102 376.7 299 62.9
HPP92_004517 Vanilla planifolia HOM05D004821 ORTHO05D005711 2.3e-100 369.8 296 59.8
TAR362G0479 Trochodendron aralioides HOM05D004821 ORTHO05D005711 1.1e-99 367.5 297 62.3
Duzib084G0132 Durio zibethinus HOM05D004821 ORTHO05D005711 3.4e-96 355.9 294 61.9
unitig_37.g12004 Utricularia gibba HOM05D004821 ORTHO05D005711 1.2e-93 347.4 291 59.1
Os02g0608900 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 8.0e-90 334.7 305 53.4
ATR0743G163 Amborella trichopoda HOM05D004821 ORTHO05D005711 1.0e-89 334.3 286 54.9
BcaC02g07141 Brassica carinata HOM05D004821 ORTHO05D005711 3.4e-88 329.3 307 58.6
ECA232G4673 Erigeron canadensis HOM05D004821 ORTHO05D005711 5.7e-88 328.6 271 62.4
Dinv24752 Davidia involucrata HOM05D004821 ORTHO05D005711 1.6e-82 310.5 215 69.8
HPP92_004526 Vanilla planifolia HOM05D004821 ORTHO05D005711 1.2e-80 304.3 252 58.7
Hund12277 Selenicereus undatus HOM05D004821 ORTHO05D005711 1.3e-79 300.8 250 58.8
Eucgr.D01249 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.9e-76 289.3 196 70.4
Zm00001eb133840 Zea mays HOM05D004821 ORTHO05D005711 8.1e-74 281.6 351 43.9
Pp3c26_11540 Physcomitrium patens HOM05D004821 ORTHO05D005711 5.2e-73 278.9 287 47.7
Pp3c3_3220 Physcomitrium patens HOM05D004821 ORTHO05D005711 8.3e-71 271.6 287 46.7
Mapoly0065s0080 Marchantia polymorpha HOM05D004821 ORTHO05D005711 2.1e-69 266.9 293 46.8
SMO119G0235 Selaginella moellendorffii HOM05D004821 ORTHO05D005711 1.0e-68 264.6 288 45.1
Eucgr.D01533 Eucalyptus grandis HOM05D004821 ORTHO05D005711 3.0e-68 263.1 198 65.7
Sc25g0003030 Simmondsia chinensis HOM05D004821 ORTHO05D005711 4.0e-65 252.7 266 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2829 Anthoceros agrestis HOM05D004821 ORTHO05D005711 2.1e-61 240.4 260 46.5
Ah.07g203210 Amaranthus hybridus HOM05D004821 ORTHO05D005711 3.3e-59 233.0 159 67.3
RcHm_v2.0_Chr7g0203201 Rosa chinensis HOM05D004821 ORTHO05D005711 6.9e-57 225.3 170 62.4
Zm00001eb246750 Zea mays HOM05D004821 ORTHO05D005711 2.1e-50 203.8 238 45.8
CBR_g30320 Chara braunii HOM05D004821 ORTHO05D005711 3.8e-39 166.4 280 36.1
QL10p064343 Quercus lobata HOM05D004821 ORTHO05D005711 1.6e-37 161.0 84 86.9
FAN07G0128 Fragaria x ananassa HOM05D004821 ORTHO05D005711 1.9e-35 154.1 126 55.6
Oeu053428.1 Olea europaea HOM05D004821 ORTHO05D005711 1.3e-31 141.4 114 62.3
MD09G1202400 Malus domestica HOM05D004821 ORTHO05D005711 1.6e-29 134.4 99 64.6
BcaB04g18803 Brassica carinata HOM05D004821 ORTHO05D005711 5.1e-28 129.4 73 80.8
Ah.07g203220 Amaranthus hybridus HOM05D004821 ORTHO05D005711 7.4e-27 125.6 89 66.3
Actinidia34565 Actinidia chinensis HOM05D004821 ORTHO05D005711 6.3e-26 122.5 68 79.4
C07p46620 Brassica napus HOM05D004821 ORTHO05D005711 1.8e-25 120.9 92 62.0
BolC7t45177H Brassica oleracea HOM05D004821 ORTHO05D005711 1.8e-25 120.9 92 62.0
BcaC05g24570 Brassica carinata HOM05D000813 ORTHO05D004282 5.3e-25 119.4 76 72.4
CARHR257120 Cardamine hirsuta HOM05D004821 ORTHO05D005711 3.8e-23 113.2 95 57.9
CDE09G1042 Ceratophyllum demersum HOM05D001480 ORTHO05D001331 2.5e-22 110.5 97 54.6
Migut.G00919 Erythranthe guttata HOM05D004821 ORTHO05D005711 3.6e-21 106.7 79 60.8
BcaB01g03349 Brassica carinata HOM05D004821 ORTHO05D005711 4.6e-21 106.3 77 66.2
CDE09G1416 Ceratophyllum demersum HOM05D004821 ORTHO05D005711 1.1e-19 101.7 175 35.4
BcaC07g42475 Brassica carinata HOM05D004821 ORTHO05D005711 6.9e-17 92.4 58 75.9
BcaB02g11099 Brassica carinata HOM05D004821 ORTHO05D005711 1.7e-15 87.8 62 64.5
Actinidia39253 Actinidia chinensis HOM05D004821 ORTHO05D005711 1.2e-13 81.6 63 61.9
TAR362G0528 Trochodendron aralioides HOM05D004821 ORTHO05D005711 4.4e-11 73.2 48 68.8
Hund22592 Selenicereus undatus HOM05D004821 ORTHO05D005711 5.7e-11 72.8 64 57.8
unitig_92.g28210 Utricularia gibba HOM05D003449 ORTHO05D004133 1.3e-10 71.6 47 68.1
BcaC06g33352 Brassica carinata HOM05D004821 ORTHO05D005711 7.0e-09 65.9 51 56.9
Os12g0225200 Oryza sativa ssp. japonica HOM05D004821 ORTHO05D005711 1.0e-07 62.0 91 35.2


User provided reference genes

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