Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G127800 Populus trichocarpa HOM05D004076 ORTHO05D004606 0.0e+00 1355.5 704 100.0
Sabra07G0104100 Salix brachista HOM05D004076 ORTHO05D004606 4.8e-312 1074.3 669 86.5
Sabra17G0020100 Salix brachista HOM05D004076 ORTHO05D004606 1.6e-297 1025.8 756 73.5
Manes.04G041450 Manihot esculenta HOM05D004076 ORTHO05D004606 1.1e-176 624.4 708 50.1
Cfa015154 Carpinus fangiana HOM05D004076 ORTHO05D004606 2.6e-167 593.2 702 49.3
Hma1.2p1_0639F.1_g194000 Hydrangea macrophylla HOM05D004076 ORTHO05D004606 2.0e-159 567.0 721 48.3
GSVIVG01010749001 Vitis vinifera HOM05D004076 ORTHO05D004606 3.2e-157 559.7 701 48.5
Duzib212G0448 Durio zibethinus HOM05D004076 ORTHO05D004606 2.6e-151 540.0 704 47.3
MD04G1007700 Malus domestica HOM05D004076 ORTHO05D004606 1.1e-149 534.6 757 43.9
QL10p048538 Quercus lobata HOM05D004076 ORTHO05D004606 1.4e-149 534.3 770 45.6
RcHm_v2.0_Chr4g0407011 Rosa chinensis HOM05D004076 ORTHO05D004606 2.1e-148 530.4 734 44.1
Actinidia39854 Actinidia chinensis HOM05D004076 ORTHO05D004606 6.3e-145 518.8 700 46.9
Thecc.04G186100 Theobroma cacao HOM05D004076 ORTHO05D004606 4.1e-144 516.2 715 44.5
FAN07G2191 Fragaria x ananassa HOM05D004076 ORTHO05D004606 3.5e-143 513.1 775 41.5
Dinv44195 Davidia involucrata HOM05D004076 ORTHO05D004606 4.2e-141 506.1 691 45.4
FvH4_4g10700 Fragaria vesca HOM05D004076 ORTHO05D004606 5.5e-141 505.8 762 41.7
MELO3C011646.2 Cucumis melo HOM05D004076 ORTHO05D004606 2.3e-139 500.4 701 44.5
TAR633G1822 Trochodendron aralioides HOM05D004076 ORTHO05D004606 6.8e-139 498.8 660 45.3
Atru.chr3.1528 Acer truncatum HOM05D004076 ORTHO05D004606 4.1e-136 489.6 634 47.5
Prupe.1G191700 Prunus persica HOM05D004076 ORTHO05D004606 3.5e-135 486.5 640 45.9
TWI63G0993 Tripterygium wilfordii HOM05D004076 ORTHO05D004606 1.0e-134 485.0 666 45.6
Rhsim02G0076700 Rhododendron simsii HOM05D004076 ORTHO05D004606 7.5e-130 468.8 749 40.9
Ca_01262_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 1.3e-129 468.0 701 41.4
Sed0018268 Sechium edule HOM05D004076 ORTHO05D004606 3.8e-126 456.4 704 42.8
Actinidia11304 Actinidia chinensis HOM05D004076 ORTHO05D004606 8.6e-126 455.3 697 43.0
FAN17G1176 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.9e-125 454.1 759 40.1
Lalb_Chr14g0372441 Lupinus albus HOM05D004076 ORTHO05D004606 2.1e-124 450.7 698 41.0
Gorai.006G227200 Gossypium raimondii HOM05D004076 ORTHO05D004606 4.7e-124 449.5 700 41.6
Lj3A198G30 Lonicera japonica HOM05D004076 ORTHO05D004606 4.0e-123 446.4 732 40.2
Medtr2g098830 Medicago truncatula HOM05D004076 ORTHO05D004606 8.9e-123 445.3 705 39.3
Gohir.A09G209900 Gossypium hirsutum HOM05D004076 ORTHO05D004606 2.2e-121 440.7 702 41.3
PGR031G3172 Punica granatum HOM05D004076 ORTHO05D004606 3.2e-120 436.8 695 40.6
Eucgr.H00375 Eucalyptus grandis HOM05D004076 ORTHO05D004606 7.0e-120 435.6 708 40.3
FAN12G0055 Fragaria x ananassa HOM05D004076 ORTHO05D004606 1.2e-119 434.9 762 38.2
Phvul.011G055000 Phaseolus vulgaris HOM05D004076 ORTHO05D004606 1.2e-119 434.9 722 39.5
FAN12G1510 Fragaria x ananassa HOM05D004076 ORTHO05D004606 7.8e-119 432.2 785 37.2
Lalb_Chr01g0003201 Lupinus albus HOM05D004076 ORTHO05D004606 1.7e-118 431.0 703 38.8
TPR.G35423 Trifolium pratense HOM05D004076 ORTHO05D004606 1.7e-118 431.0 708 38.7
VMungo1127G1790 Vigna mungo HOM05D004076 ORTHO05D004606 3.9e-118 429.9 726 38.3
Lj3g0002927 Lotus japonicus HOM05D004076 ORTHO05D004606 8.6e-118 428.7 747 37.6
ClCG08G004480 Citrullus lanatus HOM05D004076 ORTHO05D004606 1.9e-117 427.6 870 35.3
Medtr4g067090 Medicago truncatula HOM05D004076 ORTHO05D004606 9.5e-117 425.2 698 37.7
Psat1g007120 Pisum sativum HOM05D004076 ORTHO05D004606 1.7e-113 414.5 870 35.2
arahy.Tifrunner.gnm1.ann1.68X0LC Arachis hypogaea HOM05D004076 ORTHO05D004606 2.9e-113 413.7 689 38.6
Nn1g09697 Nelumbo nucifera HOM05D004076 ORTHO05D004606 1.9e-112 411.0 707 38.8
CANSAT78G1401 Cannabis sativa HOM05D004076 ORTHO05D004606 1.0e-110 405.2 703 39.3
arahy.Tifrunner.gnm1.ann1.33ZKBH Arachis hypogaea HOM05D004076 ORTHO05D004606 3.6e-108 396.7 696 37.8
EL10Ac3g05923 Beta vulgaris HOM05D004076 ORTHO05D004606 1.5e-106 391.3 794 35.6
arahy.Tifrunner.gnm1.ann1.KU5ADZ Arachis hypogaea HOM05D004076 ORTHO05D004606 1.2e-103 381.7 654 37.8
CsaV3_6G003850 Cucumis sativus L. HOM05D004076 ORTHO05D004606 1.2e-103 381.7 585 43.2
THA.LOC104826195 Tarenaya hassleriana HOM05D004076 ORTHO05D004606 1.2e-103 381.7 738 36.2
Glyma.15G030500 Glycine max HOM05D004076 ORTHO05D004606 1.7e-102 377.9 786 34.6
Lj3g0000298 Lotus japonicus HOM05D004076 ORTHO05D004606 3.9e-102 376.7 671 38.9
CiPaw.01G101100 Carya illinoinensis HOM05D004076 ORTHO05D004606 8.6e-102 375.6 454 46.7
AUR62002294 Chenopodium quinoa HOM05D004076 ORTHO05D004606 4.7e-100 369.8 849 34.4
Aqoxy7G03601 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 8.1e-100 369.0 794 35.6
Thhalv10007042m.g Eutrema salsugineum HOM05D004076 ORTHO05D004606 2.3e-99 367.5 693 36.2
arahy.Tifrunner.gnm1.ann1.ZR8I8Y Arachis hypogaea HOM05D004076 ORTHO05D004606 1.5e-98 364.8 695 36.4
Aa31LG1G8350 Aethionema arabicum HOM05D004076 ORTHO05D004606 5.4e-96 356.3 696 35.5
Oeu032957.2 Olea europaea HOM05D004076 ORTHO05D004606 4.6e-95 353.2 731 35.3
Aqoxy7G02132 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.0e-94 352.1 805 35.4
AL1G15900 Arabidopsis lyrata HOM05D004076 ORTHO05D004606 2.1e-92 344.4 689 35.4
TPR.G34235 Trifolium pratense HOM05D004076 ORTHO05D004606 3.6e-92 343.6 595 36.1
PSO832G3772 Papaver somniferum HOM05D004076 ORTHO05D004606 6.8e-91 339.3 714 35.2
Nitab4.5_0000313g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 8.9e-91 339.0 729 33.5
Psat7g213720 Pisum sativum HOM05D004076 ORTHO05D004606 8.9e-91 339.0 633 35.1
CARHR005480 Cardamine hirsuta HOM05D004076 ORTHO05D004606 2.6e-90 337.4 691 35.7
C08p51520 Brassica napus HOM05D004076 ORTHO05D004606 3.8e-89 333.6 704 35.1
BolC8t52680H Brassica oleracea HOM05D004076 ORTHO05D004606 3.8e-89 333.6 697 35.2
Carub.0001s0531 Capsella rubella HOM05D004076 ORTHO05D004606 6.4e-89 332.8 691 34.7
Lsat_1_v5_gn_3_110821 Lactuca sativa HOM05D004076 ORTHO05D004606 1.4e-88 331.6 708 34.9
BcaC07g42099 Brassica carinata HOM05D004076 ORTHO05D004606 9.3e-88 328.9 683 34.3
A09p67230 Brassica napus HOM05D004076 ORTHO05D004606 2.1e-87 327.8 705 34.8
ECA240G0221 Erigeron canadensis HOM05D004076 ORTHO05D004606 3.5e-87 327.0 798 32.8
BraA09t42056Z Brassica rapa HOM05D004076 ORTHO05D004606 7.8e-87 325.9 705 35.2
Ca_20781_v3 Cicer arietinum L. HOM05D004076 ORTHO05D004606 3.0e-86 323.9 440 41.1
DCAR_031879 Daucus carota HOM05D004076 ORTHO05D004606 2.6e-82 310.8 713 35.2
DCAR_027539 Daucus carota HOM05D004076 ORTHO05D004606 4.4e-82 310.1 706 34.8
HanXRQChr03g0090111 Helianthus annuus HOM05D004076 ORTHO05D004606 1.7e-81 308.1 799 32.0
Haze_01517 Corylus avellana HOM05D004076 ORTHO05D004606 2.2e-81 307.8 279 57.7
Sopen03g040670 Solanum pennellii HOM05D004076 ORTHO05D004606 8.4e-81 305.8 702 35.6
Eucgr.G00183 Eucalyptus grandis HOM05D004076 ORTHO05D004606 2.7e-79 300.8 317 53.0
Peaxi162Scf00297g01124 Petunia axillaris HOM05D004076 ORTHO05D004606 6.0e-79 299.7 303 50.8
MSTRG.28249 Avicennia marina HOM05D004076 ORTHO05D004606 1.3e-78 298.5 838 32.1
Solyc03g121850.3 Solanum lycopersicum HOM05D004076 ORTHO05D004606 3.0e-78 297.4 702 35.0
Ciclev10020610m.g Citrus clementina HOM05D004076 ORTHO05D004606 8.7e-78 295.8 312 51.3
Ciclev10020801m.g Citrus clementina HOM05D004076 ORTHO05D004606 5.6e-77 293.1 310 51.9
MBI08_g23493_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D004606 3.6e-76 290.4 314 49.4
Eucgr.G00179 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.2e-76 289.7 325 50.8
AT1G05950 Arabidopsis thaliana HOM05D004076 ORTHO05D004606 4.0e-75 287.0 627 34.3
Migut.B01848 Erythranthe guttata HOM05D004076 ORTHO05D004606 2.0e-74 284.6 697 31.9
Cc03_g11440 Coffea canephora HOM05D004076 ORTHO05D004606 1.7e-73 281.6 308 51.9
Gohir.D09G203332 Gossypium hirsutum HOM05D004076 ORTHO05D004606 3.8e-73 280.4 310 50.6
SalBow3G0974 Salvia bowleyana HOM05D004076 ORTHO05D004606 4.2e-72 276.9 724 31.4
Nitab4.5_0002475g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 3.5e-71 273.9 720 30.7
Aqoxy7G02134 Aquilegia oxysepala HOM05D004076 ORTHO05D004606 1.0e-70 272.3 347 48.4
Sopen07g034480 Solanum pennellii HOM05D004076 ORTHO05D004606 1.0e-70 272.3 368 42.9
SGA_v2.0_scaffold24G10696 Striga asiatica HOM05D004076 ORTHO05D004606 2.3e-70 271.2 715 31.3
Eucgr.G00184 Eucalyptus grandis HOM05D004076 ORTHO05D004606 6.7e-70 269.6 298 50.7
ATR0686G221 Amborella trichopoda HOM05D004076 ORTHO05D004606 1.5e-69 268.5 826 28.9
Medtr2g098710 Medicago truncatula HOM05D004076 ORTHO05D004606 5.6e-69 266.5 387 42.6
Medtr2g098720 Medicago truncatula HOM05D004076 ORTHO05D004606 2.1e-68 264.6 317 45.1
Medtr2g098730 Medicago truncatula HOM05D004076 ORTHO05D004606 6.2e-68 263.1 345 43.5
Sp1g04770 Schrenkiella parvula HOM05D004076 ORTHO05D004606 2.4e-67 261.2 693 30.9
Eucgr.G00188 Eucalyptus grandis HOM05D004076 ORTHO05D004606 1.2e-66 258.8 583 33.3
Nitab4.5_0009641g0050 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.0e-65 255.8 731 31.6
Lj6A56T29 Lonicera japonica HOM05D004076 ORTHO05D004606 6.5e-65 253.1 416 38.9
Nitab4.5_0005003g0040 Nicotiana tabacum HOM05D004076 ORTHO05D004606 1.9e-64 251.5 699 31.3
Ciclev10023338m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.5e-63 247.3 271 51.3
Peaxi162Scf00297g01121 Petunia axillaris HOM05D004076 ORTHO05D004606 3.9e-62 243.8 306 48.4
Medtr0002s1280 Medicago truncatula HOM05D004076 ORTHO05D004606 5.3e-59 233.4 320 42.2
SalBow5G1086 Salvia bowleyana HOM05D004076 ORTHO05D004606 2.0e-58 231.5 303 43.6
Zm00001eb318340 Zea mays HOM05D004076 ORTHO05D004606 2.6e-58 231.1 697 30.0
COL.COLO4_33468 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.4e-56 225.3 304 43.8
CDE08G1584 Ceratophyllum demersum HOM05D004076 ORTHO05D004606 4.2e-56 223.8 764 28.7
Glyma.12G053033 Glycine max HOM05D004076 ORTHO05D004606 9.3e-56 222.6 280 43.6
Glyma.11G128400 Glycine max HOM05D004076 ORTHO05D004606 1.6e-55 221.9 446 35.7
Eucgr.G00171 Eucalyptus grandis HOM05D004076 ORTHO05D004606 3.9e-54 217.2 222 52.7
Sc11g0003780 Simmondsia chinensis HOM05D004076 ORTHO05D004606 4.1e-51 207.2 224 51.8
PGSC0003DMG400002575 Solanum tuberosum HOM05D004076 ORTHO05D004606 6.9e-51 206.5 267 47.9
Migut.N01559 Erythranthe guttata HOM05D004076 ORTHO05D004606 1.3e-49 202.2 691 27.9
COL.COLO4_20907 Corchorus olitorius HOM05D004076 ORTHO05D004606 1.8e-46 191.8 625 30.1
Cpa.g.sc9.266 Carica papaya HOM05D004076 ORTHO05D004606 3.7e-44 184.1 172 51.7
Medtr2g098770 Medicago truncatula HOM05D004076 ORTHO05D004606 4.8e-44 183.7 293 41.3
Gohir.D09G203266 Gossypium hirsutum HOM05D004076 ORTHO05D004606 1.5e-42 178.7 323 38.4
Haze_01516 Corylus avellana HOM05D004076 ORTHO05D004606 1.1e-37 162.5 310 37.7
Ciclev10024150m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.3e-37 161.0 188 48.9
Ciclev10024444m.g Citrus clementina HOM05D004076 ORTHO05D004606 3.3e-37 161.0 188 48.9
Lj6A56G23 Lonicera japonica HOM05D004076 ORTHO05D004606 4.4e-37 160.6 294 35.7
Sed0002856 Sechium edule HOM05D004076 ORTHO05D004606 2.4e-35 154.8 216 42.1
AUR62015396 Chenopodium quinoa HOM05D004076 ORTHO05D004606 1.2e-34 152.5 211 42.7
SEGI_36759 Sequoiadendron giganteum HOM05D004076 ORTHO05D004606 6.5e-33 146.7 227 39.6
BolC8t52678H Brassica oleracea HOM05D004076 ORTHO05D004606 2.4e-27 128.3 182 40.7
C08p51510 Brassica napus HOM05D004076 ORTHO05D004606 4.1e-27 127.5 182 40.7
BolC8t52679H Brassica oleracea HOM05D004076 ORTHO05D004606 1.2e-26 125.9 173 41.0
BraA09t42054Z Brassica rapa HOM05D004076 ORTHO05D004606 2.6e-26 124.8 182 40.7
FAN22G1497 Fragaria x ananassa HOM05D004076 ORTHO05D004606 2.6e-26 124.8 125 48.8
Lj3g0024562 Lotus japonicus HOM05D004076 ORTHO05D004606 1.0e-25 122.9 151 43.0
BraA09t42055Z Brassica rapa HOM05D004076 ORTHO05D004606 1.1e-24 119.4 183 38.3
BcaC07g42097 Brassica carinata HOM05D004076 ORTHO05D004606 4.2e-24 117.5 182 39.0
A09p67220 Brassica napus HOM05D004076 ORTHO05D004606 9.4e-24 116.3 204 37.3
Os09g0514500 Oryza sativa ssp. japonica HOM05D004076 ORTHO05D004606 1.6e-23 115.5 165 37.0
Lj3g0014411 Lotus japonicus HOM05D004076 ORTHO05D004606 3.6e-23 114.4 184 37.0
Glyma.13G343800 Glycine max HOM05D004076 ORTHO05D004606 1.8e-22 112.1 121 52.1
Glyma.12G052967 Glycine max HOM05D004076 ORTHO05D004606 4.0e-22 110.9 331 31.4
Lj8A15T44 Lonicera japonica HOM05D004076 ORTHO05D004606 4.0e-22 110.9 132 47.0
Ciclev10022885m.g Citrus clementina HOM05D004076 ORTHO05D004606 2.6e-21 108.2 117 51.3
Hund12007 Selenicereus undatus HOM05D004076 ORTHO05D004606 6.3e-20 103.6 130 43.8
Lj8A15T42 Lonicera japonica HOM05D004076 ORTHO05D004606 7.2e-16 90.1 132 37.9
Peaxi162Scf00297g01127 Petunia axillaris HOM05D004076 ORTHO05D004606 1.0e-14 86.3 122 38.5
MBI08_g23495_MAGBIO Magnolia biondii HOM05D004076 ORTHO05D003073 3.0e-14 84.7 169 35.5
SHI23539 Sapria himalayana HOM05D004076 ORTHO05D004606 1.8e-11 75.5 75 50.7
BcaC07g42096 Brassica carinata HOM05D000961 ORTHO05D000841 5.9e-10 70.5 207 29.5
arahy.Tifrunner.gnm1.ann1.S79H68 Arachis hypogaea HOM05D004076 ORTHO05D004606 5.6e-08 63.9 139 33.1
Lj8A15T43 Lonicera japonica HOM05D004076 ORTHO05D004606 2.1e-07 62.0 93 39.8
Medtr2g098740 Medicago truncatula HOM05D004076 ORTHO05D004606 5.2e-06 57.4 65 49.2
Medtr2g098780 Medicago truncatula HOM05D004076 ORTHO05D004606 6.8e-06 57.0 65 49.2
Cc03_g11430 Coffea canephora HOM05D004076 ORTHO05D004606 8.9e-06 56.6 98 31.6


User provided reference genes

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