Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G124600 Populus trichocarpa HOM05D006262 ORTHO05D007266 4.6e-250 867.5 448 100.0
Sabra07G0100700 Salix brachista HOM05D006262 ORTHO05D002297 5.7e-216 754.2 445 88.3
Manes.04G048800 Manihot esculenta HOM05D006262 ORTHO05D007266 2.8e-146 522.7 446 65.7
Atru.chr3.1601 Acer truncatum HOM05D006262 ORTHO05D007266 9.3e-118 427.9 451 56.1
Atru.chr3.1609 Acer truncatum HOM05D006262 ORTHO05D007266 9.3e-118 427.9 451 56.1
TWI63G1082 Tripterygium wilfordii HOM05D006262 ORTHO05D007266 1.3e-114 417.5 461 55.7
Ciclev10020134m.g Citrus clementina HOM05D006262 ORTHO05D007266 9.0e-113 411.4 446 57.4
BcaB01g03403 Brassica carinata HOM05D006262 ORTHO05D007266 1.6e-109 400.6 436 54.1
Cfa015775 Carpinus fangiana HOM05D006262 ORTHO05D007266 4.6e-109 399.1 389 57.6
A03p24130 Brassica napus HOM05D006262 ORTHO05D007266 6.0e-109 398.7 436 54.4
BraA03t11623Z Brassica rapa HOM05D006262 ORTHO05D007266 7.9e-109 398.3 436 54.4
C03p28720 Brassica napus HOM05D006262 ORTHO05D007266 1.5e-107 394.0 439 54.2
BolC3t15234H Brassica oleracea HOM05D006262 ORTHO05D007266 1.9e-107 393.7 436 53.7
BcaC01g05249 Brassica carinata HOM05D006262 ORTHO05D007266 2.5e-107 393.3 436 54.1
Sp4g25360 Schrenkiella parvula HOM05D006262 ORTHO05D007266 3.3e-107 392.9 439 54.0
CANSAT78G0581 Cannabis sativa HOM05D006262 ORTHO05D007266 2.8e-106 389.8 449 51.7
Thhalv10001453m.g Eutrema salsugineum HOM05D006262 ORTHO05D007266 4.8e-106 389.0 439 53.3
Thecc.05G002700 Theobroma cacao HOM05D006262 ORTHO05D007266 3.1e-105 386.3 437 54.2
AT2G43235 Arabidopsis thaliana HOM05D006262 ORTHO05D007266 4.5e-104 382.5 447 52.3
RcHm_v2.0_Chr4g0407651 Rosa chinensis HOM05D006262 ORTHO05D007266 5.9e-104 382.1 395 55.7
QL10p047365 Quercus lobata HOM05D006262 ORTHO05D007266 1.0e-103 381.3 430 51.9
Prupe.1G187900 Prunus persica HOM05D006262 ORTHO05D007266 1.3e-103 380.9 356 59.3
FvH4_4g11340 Fragaria vesca HOM05D006262 ORTHO05D007266 1.7e-103 380.6 435 52.0
Carub.0004s2570 Capsella rubella HOM05D006262 ORTHO05D007266 2.2e-103 380.2 445 51.7
CSS0049911 Camellia sinensis var. sinensis HOM05D006262 ORTHO05D007266 8.5e-103 378.3 407 51.8
AL4G41890 Arabidopsis lyrata HOM05D006262 ORTHO05D007266 1.9e-102 377.1 446 50.9
CARHR138310 Cardamine hirsuta HOM05D006262 ORTHO05D007266 1.2e-101 374.4 427 51.8
MD04G1038000 Malus domestica HOM05D006262 ORTHO05D007266 6.1e-101 372.1 389 54.8
TAR362G0090 Trochodendron aralioides HOM05D006262 ORTHO05D007266 6.1e-101 372.1 425 52.0
COL.COLO4_14416 Corchorus olitorius HOM05D006262 ORTHO05D007266 3.0e-100 369.8 438 52.1
Rhsim09G0030700 Rhododendron simsii HOM05D006262 ORTHO05D007266 3.0e-100 369.8 453 49.2
Aa31LG1G25040 Aethionema arabicum HOM05D006262 ORTHO05D007266 8.8e-100 368.2 459 49.9
Dinv22693 Davidia involucrata HOM05D006262 ORTHO05D007266 8.8e-100 368.2 431 52.2
Duzib093G0344 Durio zibethinus HOM05D006262 ORTHO05D007266 4.3e-99 365.9 449 50.3
PGR142G3389 Punica granatum HOM05D006262 ORTHO05D007266 5.7e-99 365.5 422 50.9
HanXRQChr15g0494811 Helianthus annuus HOM05D006262 ORTHO05D007266 8.5e-95 351.7 472 45.8
Glyma.20G245900 Glycine max HOM05D006262 ORTHO05D007266 1.4e-94 350.9 451 50.1
Hma1.2p1_0597F.1_g186430 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 1.4e-94 350.9 460 47.2
Gohir.A04G096300 Gossypium hirsutum HOM05D006262 ORTHO05D007266 2.5e-94 350.1 430 51.6
DCAR_023918 Daucus carota HOM05D006262 ORTHO05D007266 4.2e-94 349.4 395 52.2
Lalb_Chr02g0144321 Lupinus albus HOM05D006262 ORTHO05D007266 4.2e-94 349.4 416 50.0
Gohir.D04G136100 Gossypium hirsutum HOM05D006262 ORTHO05D007266 1.6e-93 347.4 430 50.9
Eucgr.A00253 Eucalyptus grandis HOM05D006262 ORTHO05D007266 4.7e-93 345.9 338 55.0
ClCG07G015820 Citrullus lanatus HOM05D006262 ORTHO05D007266 6.1e-93 345.5 451 46.1
Gorai.012G119900 Gossypium raimondii HOM05D006262 ORTHO05D007266 7.9e-93 345.1 430 50.7
vmacro00601 Vaccinium macrocarpon HOM05D006262 ORTHO05D007266 3.0e-92 343.2 473 44.8
PGSC0003DMG400021613 Solanum tuberosum HOM05D006262 ORTHO05D007266 1.5e-91 340.9 423 47.3
Cc03_g13170 Coffea canephora HOM05D006262 ORTHO05D007266 2.2e-90 337.0 400 49.0
Sed0004128 Sechium edule HOM05D006262 ORTHO05D007266 3.7e-90 336.3 443 46.0
Ca_29592_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 4.8e-90 335.9 445 46.1
Lsat_1_v5_gn_2_51881 Lactuca sativa HOM05D006262 ORTHO05D007266 4.8e-90 335.9 409 49.1
MELO3C017699.2 Cucumis melo HOM05D006262 ORTHO05D007266 2.4e-89 333.6 465 44.5
Sopen09g036450 Solanum pennellii HOM05D006262 ORTHO05D007266 3.1e-89 333.2 408 48.5
Phvul.007G004000 Phaseolus vulgaris HOM05D006262 ORTHO05D007266 4.1e-89 332.8 453 48.6
arahy.Tifrunner.gnm1.ann1.6Y9ITK Arachis hypogaea HOM05D006262 ORTHO05D007266 7.0e-89 332.0 354 53.7
arahy.Tifrunner.gnm1.ann1.BL35NN Arachis hypogaea HOM05D006262 ORTHO05D007266 7.0e-89 332.0 353 54.1
Solyc09g098530.4 Solanum lycopersicum HOM05D006262 ORTHO05D007266 1.2e-88 331.3 448 45.8
CsaV3_4G003530 Cucumis sativus L. HOM05D006262 ORTHO05D007266 2.0e-88 330.5 450 44.9
PSO675G4698 Papaver somniferum HOM05D006262 ORTHO05D007266 2.2e-87 327.0 443 45.1
Lj5g0018354 Lotus japonicus HOM05D006262 ORTHO05D007266 2.5e-86 323.6 391 48.6
ECA238G4140 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.1e-85 320.5 366 50.5
VMungo0720G2273 Vigna mungo HOM05D006262 ORTHO05D007266 3.6e-85 319.7 456 46.1
PSO017G4626 Papaver somniferum HOM05D006262 ORTHO05D007266 2.3e-84 317.0 439 44.2
ATR0743G268 Amborella trichopoda HOM05D006262 ORTHO05D007266 3.0e-84 316.6 416 44.7
Lj3A232G38 Lonicera japonica HOM05D006262 ORTHO05D007266 1.5e-83 314.3 388 46.4
MBI08_g33651_MAGBIO Magnolia biondii HOM05D006262 ORTHO05D007266 2.6e-83 313.5 408 46.8
Aqoxy2G04115 Aquilegia oxysepala HOM05D006262 ORTHO05D007266 5.7e-83 312.4 453 44.6
MSTRG.24585 Avicennia marina HOM05D006262 ORTHO05D007266 9.7e-83 311.6 418 45.7
GSVIVG01013579001 Vitis vinifera HOM05D006262 ORTHO05D007266 4.8e-82 309.3 257 62.6
Medtr1g116540 Medicago truncatula HOM05D006262 ORTHO05D007266 6.3e-82 308.9 453 45.7
TPR.G10421 Trifolium pratense HOM05D006262 ORTHO05D007266 1.4e-81 307.8 429 43.8
EL10Ac3g06302 Beta vulgaris HOM05D006262 ORTHO05D007266 1.2e-80 304.7 445 44.7
Haze_00720 Corylus avellana HOM05D006262 ORTHO05D007266 1.2e-80 304.7 560 40.0
Nn1g09825 Nelumbo nucifera HOM05D006262 ORTHO05D007266 5.9e-80 302.4 388 45.6
Sc13g0007690 Simmondsia chinensis HOM05D006262 ORTHO05D007266 5.0e-79 299.3 423 44.9
Ah.07g204100 Amaranthus hybridus HOM05D006262 ORTHO05D007266 6.5e-79 298.9 393 46.1
Hund22599 Selenicereus undatus HOM05D006262 ORTHO05D007266 6.5e-79 298.9 461 44.5
Migut.N03113 Erythranthe guttata HOM05D006262 ORTHO05D007266 8.5e-79 298.5 414 44.0
SalBow6G1208 Salvia bowleyana HOM05D006262 ORTHO05D007266 8.0e-77 292.0 441 42.2
CDE09G0849 Ceratophyllum demersum HOM05D006262 ORTHO05D007266 6.3e-74 282.3 304 51.6
HPP92_024424 Vanilla planifolia HOM05D006262 ORTHO05D007266 7.7e-72 275.4 390 40.8
Psat6g241480 Pisum sativum HOM05D006262 ORTHO05D007266 2.1e-69 267.3 437 42.8
Zm00001eb350760 Zea mays HOM05D006262 ORTHO05D007266 1.4e-68 264.6 375 42.7
Os05g0299200 Oryza sativa ssp. japonica HOM05D006262 ORTHO05D007266 2.3e-68 263.8 363 43.8
Ca_11400_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.3e-66 258.1 445 40.4
Ca_11403_v3 Cicer arietinum L. HOM05D006262 ORTHO05D007266 1.8e-65 254.2 440 40.2
unitig_27.g25149 Utricularia gibba HOM05D006262 ORTHO05D007266 1.8e-65 254.2 407 39.8
Oeu029569.3 Olea europaea HOM05D006262 ORTHO05D007266 2.3e-63 247.3 509 36.9
AUR62002605 Chenopodium quinoa HOM05D006262 ORTHO05D007266 1.8e-57 227.6 389 40.9
SEGI_17174 Sequoiadendron giganteum HOM05D006262 ORTHO05D007266 5.9e-56 222.6 436 37.8
AUR62030023 Chenopodium quinoa HOM05D006262 ORTHO05D007266 3.9e-55 219.9 452 37.8
CiPaw.01G102600 Carya illinoinensis HOM05D006262 ORTHO05D007266 6.1e-53 212.6 281 46.6
Nitab4.5_0002908g0080 Nicotiana tabacum HOM05D006262 ORTHO05D007266 5.2e-52 209.5 170 64.1
Peaxi162Scf00286g00119 Petunia axillaris HOM05D006262 ORTHO05D007266 2.0e-51 207.6 168 64.9
AagrBONN_evm.TU.Sc2ySwM_344.5117 Anthoceros agrestis HOM05D006262 ORTHO05D007266 3.4e-51 206.8 364 37.4
Nitab4.5_0001049g0110 Nicotiana tabacum HOM05D006262 ORTHO05D007266 2.2e-50 204.1 161 64.6
Mapoly0004s0159 Marchantia polymorpha HOM05D006262 ORTHO05D007266 5.0e-47 193.0 355 36.6
Pp3c12_3930 Physcomitrium patens HOM05D006262 ORTHO05D007266 8.0e-45 185.7 365 35.6
Hma1.2p1_0597F.1_g186420 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 5.2e-44 183.0 135 72.6
SMO351G0235 Selaginella moellendorffii HOM05D006262 ORTHO05D007266 1.5e-43 181.4 287 40.8
Cpa.g.sc71.28 Carica papaya HOM05D006262 ORTHO05D007266 4.4e-43 179.9 304 39.1
SGA_v2.0_scaffold31G12573 Striga asiatica HOM05D006262 ORTHO05D007266 1.1e-41 175.3 413 31.2
Pp3c9_3680 Physcomitrium patens HOM05D006262 ORTHO05D007266 1.2e-32 145.2 360 31.1
Nitab4.5_0002908g0070 Nicotiana tabacum HOM05D006262 ORTHO05D007266 1.6e-32 144.8 219 41.1
Nitab4.5_0001049g0100 Nicotiana tabacum HOM05D006262 ORTHO05D007266 4.6e-32 143.3 218 40.4
Cpa.g.sc71.30 Carica papaya HOM05D006262 ORTHO05D007266 3.4e-27 127.1 86 80.2
FAN17G0796 Fragaria x ananassa HOM05D006262 ORTHO05D007266 7.1e-25 119.4 82 69.5
Peaxi162Scf00286g10017 Petunia axillaris HOM05D006262 ORTHO05D007266 1.7e-23 114.8 283 32.9
Hma1.2p1_0597F.1_g186440 Hydrangea macrophylla HOM05D006262 ORTHO05D007266 9.6e-22 109.0 281 31.0
MCO03G554 Micromonas commoda HOM05D006262 ORTHO05D007266 1.5e-19 101.7 306 30.1
QL09p046233 Quercus lobata HOM05D006262 ORTHO05D007266 1.5e-19 101.7 83 68.7
CAN.G688.4 Capsicum annuum HOM05D006262 ORTHO05D007266 5.8e-19 99.8 75 64.0
PRCOL_00005486 Prasinoderma coloniale HOM05D006262 ORTHO05D007266 2.4e-17 94.4 221 32.1
CAN.G51.2 Capsicum annuum HOM05D006262 ORTHO05D007266 5.3e-12 76.6 75 53.3
GSVIVG01020265001 Vitis vinifera HOM05D006262 ORTHO05D007266 1.2e-11 75.5 105 39.0
BraA10t42873Z Brassica rapa HOM05D006262 ORTHO05D007266 2.6e-11 74.3 246 32.5
Cre01.g049900 Chlamydomonas reinhardtii HOM05D006262 ORTHO05D007266 3.4e-11 73.9 285 25.3
FAN07G2249 Fragaria x ananassa HOM05D006262 ORTHO05D007266 4.5e-11 73.6 46 78.3
FvH4_c17g00080 Fragaria vesca HOM05D006262 ORTHO05D007266 5.8e-11 73.2 49 73.5
FAN07G1916 Fragaria x ananassa HOM05D006262 ORTHO05D007266 5.8e-11 73.2 52 67.3
AagrBONN_evm.TU.Sc2ySwM_368.1862 Anthoceros agrestis HOM05D005935 ORTHO05D007012 1.9e-09 68.2 74 54.1
Glyma.10G295900 Glycine max HOM05D006262 ORTHO05D007266 8.7e-07 59.3 193 34.2
FAN05G5634 Fragaria x ananassa HOM05D010299 ORTHO05D019146 1.9e-06 58.2 103 41.7


User provided reference genes

Program Settings