Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 0.0e+00 1423.7 750 100.0
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 4.9e-305 1050.8 757 76.2
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 4.2e-296 1021.1 769 73.1
Sabra07G0100500 Salix brachista HOM05D004311 ORTHO05D005145 6.9e-174 615.1 413 80.9
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 1.6e-170 604.0 787 50.4
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.0e-141 507.3 807 45.2
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 3.1e-134 483.4 346 75.4
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 1.7e-132 477.6 646 48.1
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 4.0e-129 466.5 839 41.4
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 3.7e-127 459.9 637 49.3
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 5.0e-124 449.5 585 49.1
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 8.5e-124 448.7 774 41.6
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.1e-123 448.4 597 49.2
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 1.5e-123 448.0 523 53.2
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 5.5e-123 446.0 722 42.0
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 1.0e-121 441.8 597 48.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 1.2e-120 438.3 511 50.5
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 9.8e-120 435.3 813 42.1
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 6.3e-119 432.6 923 36.6
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 2.7e-117 427.2 626 47.0
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 5.5e-115 419.5 416 56.0
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 1.6e-114 417.9 823 40.2
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 1.8e-113 414.5 663 42.8
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 7.0e-110 402.5 696 40.5
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 4.0e-105 386.7 824 37.1
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 8.9e-105 385.6 569 43.9
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 8.9e-105 385.6 569 43.9
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 5.8e-104 382.9 616 41.2
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 1.1e-102 378.6 569 43.8
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.2e-98 365.2 653 41.2
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 8.9e-97 359.0 509 43.8
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 2.6e-96 357.5 427 50.6
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 3.4e-96 357.1 600 42.2
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 5.8e-96 356.3 421 51.5
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 7.5e-96 355.9 415 51.1
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 2.2e-95 354.4 771 37.5
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.1e-94 352.1 572 41.8
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.1e-94 352.1 572 41.8
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 1.1e-94 352.1 572 41.8
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 2.4e-94 350.9 416 49.8
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 5.4e-94 349.7 417 49.6
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 2.1e-93 347.8 602 41.4
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.3e-92 345.1 345 55.7
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 1.7e-92 344.7 414 49.8
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.7e-92 344.7 509 43.2
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 6.6e-92 342.8 417 48.7
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.9e-91 341.3 514 43.4
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 3.3e-91 340.5 554 42.4
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 9.5e-91 339.0 733 36.8
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 2.1e-90 337.8 413 49.9
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 2.8e-90 337.4 463 45.1
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 3.6e-90 337.0 421 48.5
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 6.2e-90 336.3 325 57.5
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 1.4e-89 335.1 478 44.1
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 1.4e-89 335.1 702 37.0
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 6.8e-89 332.8 531 41.1
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 9.9e-88 328.9 431 48.5
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 2.9e-87 327.4 334 53.0
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 1.2e-85 322.0 414 47.6
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 7.8e-85 319.3 302 57.0
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 1.7e-84 318.2 422 46.7
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 3.9e-84 317.0 508 41.1
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 1.1e-83 315.5 417 46.5
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 1.5e-83 315.1 786 34.4
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 1.9e-83 314.7 416 46.4
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 5.6e-83 313.2 522 41.4
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.2e-82 312.0 485 43.5
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 3.6e-82 310.5 295 56.9
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 6.8e-81 306.2 432 44.4
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 2.0e-80 304.7 546 40.8
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 1.7e-79 301.6 493 41.6
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 3.2e-78 297.4 601 36.9
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 6.0e-77 293.1 499 39.7
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 1.1e-75 288.9 329 51.1
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 4.7e-74 283.5 461 41.9
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 1.1e-73 282.3 346 48.8
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 3.1e-73 280.8 682 35.2
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 5.8e-72 276.6 660 34.2
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 9.9e-72 275.8 691 34.2
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.3e-71 275.4 654 35.2
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 2.9e-71 274.2 589 34.3
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 1.1e-70 272.3 619 33.4
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 1.1e-70 272.3 584 36.0
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 7.1e-70 269.6 420 40.5
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 9.3e-70 269.2 753 32.1
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 9.3e-70 269.2 459 40.7
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 3.5e-69 267.3 452 41.2
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 5.1e-68 263.5 571 35.0
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 1.9e-67 261.5 613 34.7
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 3.3e-67 260.8 255 54.9
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 4.3e-67 260.4 442 38.5
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.6e-66 258.5 608 37.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 1.6e-66 258.5 571 33.8
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 4.8e-66 256.9 571 35.0
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.4e-65 255.4 607 34.6
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 2.4e-65 254.6 685 31.2
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 6.9e-65 253.1 411 39.9
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 1.2e-64 252.3 426 37.8
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 1.5e-64 251.9 256 54.7
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 2.0e-64 251.5 573 34.6
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 2.6e-64 251.1 414 39.1
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 1.3e-63 248.8 545 40.6
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 1.3e-63 248.8 452 37.6
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 1.4e-62 245.4 600 33.0
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 2.7e-61 241.1 298 46.6
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 5.1e-60 236.9 296 46.3
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 5.8e-56 223.4 228 55.7
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.3e-52 212.2 308 41.9
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 3.0e-52 211.1 322 44.1
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 2.8e-50 204.5 543 36.5
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 6.9e-49 199.9 321 40.5
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 4.6e-45 187.2 356 36.2
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 3.1e-41 174.5 442 31.7
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 2.0e-40 171.8 369 33.9
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 3.4e-40 171.0 186 52.2
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.7e-39 168.7 298 37.6
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 1.4e-38 165.6 295 37.3
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 3.0e-36 157.9 297 35.0
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 2.5e-35 154.8 695 27.3
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 9.7e-35 152.9 408 30.6
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 9.4e-30 136.3 225 40.4
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.0e-27 128.6 153 51.6
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 3.3e-27 127.9 111 56.8
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 4.7e-21 107.5 285 33.7
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.1e-17 96.3 280 28.9
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 7.7e-16 90.1 180 37.2
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 1.3e-15 89.4 436 27.5
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 1.7e-15 89.0 85 51.8
CANSAT01G2758 Cannabis sativa HOM05D004311 ORTHO05D005145 2.5e-14 85.1 228 33.3
RcHm_v2.0_Chr4g0407521 Rosa chinensis HOM05D004311 ORTHO05D005145 2.5e-14 85.1 286 32.2
CANSAT78G0609 Cannabis sativa HOM05D004311 ORTHO05D005145 7.2e-14 83.6 345 31.0
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 4.4e-11 74.3 337 25.5
MD04G1038400 Malus domestica HOM05D004311 ORTHO05D005145 7.5e-11 73.6 468 26.9
Cpa.g.sc1876.1 Carica papaya HOM05D004311 ORTHO05D005145 9.7e-11 73.2 137 39.4
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 6.3e-10 70.5 472 24.8
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.4e-09 69.3 51 66.7
Thhalv10016741m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 3.1e-09 68.2 347 25.6
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 1.2e-08 66.2 194 34.0
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 1.6e-08 65.9 69 49.3
TAR374G0693 Trochodendron aralioides HOM05D015611 ORTHO05D005145 3.5e-08 64.7 69 43.5
PGSC0003DMG400021611 Solanum tuberosum HOM05D004311 ORTHO05D005145 5.9e-08 63.9 199 27.6
AL4G41050 Arabidopsis lyrata HOM05D004311 ORTHO05D005145 1.0e-07 63.2 235 28.9
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 2.2e-07 62.0 59 55.9
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 1.1e-06 59.7 153 35.3
THA.LOC104798849 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.5e-06 59.3 276 25.4
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.9e-06 58.9 53 56.6
TAR362G0891 Trochodendron aralioides HOM05D015611 ORTHO05D005145 3.2e-06 58.2 133 33.1
PSO339G2231 Papaver somniferum HOM05D015611 ORTHO05D026019 9.4e-06 56.6 54 48.1


User provided reference genes

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