Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G122500 Populus trichocarpa HOM05D008139 ORTHO05D009872 4.1e-53 211.1 103 100.0
Potri.017G037500 Populus trichocarpa HOM05D008139 ORTHO05D009872 4.1e-37 157.9 89 87.6
Sabra17G0024400 Salix brachista HOM05D008139 ORTHO05D009872 1.3e-35 152.9 104 78.8
Cfa014432 Carpinus fangiana HOM05D008139 ORTHO05D009872 1.1e-34 149.8 99 73.7
Manes.13G103000 Manihot esculenta HOM05D008139 ORTHO05D009872 7.3e-34 147.1 104 72.1
QL08p033688 Quercus lobata HOM05D008139 ORTHO05D009872 1.2e-31 139.8 99 71.7
Lj3g0004995 Lotus japonicus HOM05D008139 ORTHO05D009872 6.4e-30 134.0 99 69.7
Lalb_Chr03g0028851 Lupinus albus HOM05D008139 ORTHO05D009872 6.0e-28 127.5 99 65.7
RcHm_v2.0_Chr2g0126901 Rosa chinensis HOM05D008139 ORTHO05D009872 2.3e-27 125.6 89 68.5
Duzib133G0708 Durio zibethinus HOM05D008139 ORTHO05D009872 5.1e-27 124.4 100 67.0
CiPaw.04G117200 Carya illinoinensis HOM05D008139 ORTHO05D009872 8.6e-27 123.6 101 65.3
Glyma.12G100900 Glycine max HOM05D008139 ORTHO05D009872 8.6e-27 123.6 100 64.0
Thecc.04G120400 Theobroma cacao HOM05D008139 ORTHO05D009872 8.6e-27 123.6 98 65.3
TWI36G0135 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 9.5e-26 120.2 98 64.3
Ciclev10017826m.g Citrus clementina HOM05D008139 ORTHO05D009872 2.1e-25 119.0 95 66.3
Prupe.3G131300 Prunus persica HOM05D008139 ORTHO05D009872 2.8e-25 118.6 105 60.0
Hma1.2p1_0249F.1_g102430 Hydrangea macrophylla HOM05D008139 ORTHO05D009872 4.7e-25 117.9 91 67.0
FAN02G4280 Fragaria x ananassa HOM05D008139 ORTHO05D009872 3.1e-24 115.2 85 65.9
Medtr4g046720 Medicago truncatula HOM05D008139 ORTHO05D009872 6.8e-24 114.0 99 58.6
TPR.G19049 Trifolium pratense HOM05D008139 ORTHO05D009872 6.8e-24 114.0 99 58.6
Prupe.2G122300 Prunus persica HOM05D008139 ORTHO05D009872 1.5e-23 112.8 94 62.8
TWI75G0563 Tripterygium wilfordii HOM05D008139 ORTHO05D009872 2.0e-23 112.5 97 61.9
MD07G1098300 Malus domestica HOM05D008139 ORTHO05D009872 3.4e-23 111.7 105 60.0
Gohir.D11G168166 Gossypium hirsutum HOM05D008139 ORTHO05D009872 2.2e-22 109.0 100 57.0
Gorai.007G179600 Gossypium raimondii HOM05D008139 ORTHO05D009872 2.2e-22 109.0 100 57.0
CSS0007440 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 8.4e-22 107.1 99 58.6
Gohir.A11G161900 Gossypium hirsutum HOM05D008139 ORTHO05D009872 1.4e-21 106.3 100 56.0
CSS0007820 Camellia sinensis var. sinensis HOM05D008139 ORTHO05D009872 2.4e-21 105.5 91 62.6
COL.COLO4_15724 Corchorus olitorius HOM05D008139 ORTHO05D009872 4.2e-21 104.8 78 60.3
Atru.chr6.3155 Acer truncatum HOM05D008139 ORTHO05D009872 2.7e-20 102.1 95 55.8
Phvul.011G105800 Phaseolus vulgaris HOM05D008139 ORTHO05D009872 3.5e-20 101.7 94 55.3
TAR626G0598 Trochodendron aralioides HOM05D008139 ORTHO05D009872 6.0e-20 100.9 99 56.6
Atru.chr6.3157 Acer truncatum HOM05D008139 ORTHO05D009872 1.0e-19 100.1 104 53.8
Dinv02745 Davidia involucrata HOM05D008139 ORTHO05D009872 2.3e-19 99.0 89 58.4
Lsat_1_v5_gn_5_103860 Lactuca sativa HOM05D008139 ORTHO05D009872 1.1e-18 96.7 78 67.9
Eucgr.A01721 Eucalyptus grandis HOM05D008139 ORTHO05D009872 1.5e-18 96.3 85 61.2
ClCG02G001810 Citrullus lanatus HOM05D008139 ORTHO05D009872 2.5e-18 95.5 102 49.0
Cc10_g03180 Coffea canephora HOM05D008139 ORTHO05D009872 5.6e-18 94.4 101 53.5
Nn1g07030 Nelumbo nucifera HOM05D008139 ORTHO05D009872 5.6e-18 94.4 99 53.5
Lsat_1_v5_gn_8_128280 Lactuca sativa HOM05D008139 ORTHO05D009872 9.6e-18 93.6 78 65.4
PGR083G1842 Punica granatum HOM05D008139 ORTHO05D009872 4.8e-17 91.3 84 58.3
Rhsim06G0158900 Rhododendron simsii HOM05D008139 ORTHO05D009872 6.2e-17 90.9 90 52.2
TAR626G0589 Trochodendron aralioides HOM05D008139 ORTHO05D009872 8.1e-17 90.5 97 52.6
DCAR_019772 Daucus carota HOM05D008139 ORTHO05D009872 1.4e-16 89.7 88 59.1
Sed0019249 Sechium edule HOM05D008139 ORTHO05D009872 1.8e-16 89.4 102 47.1
PGSC0003DMG400045933 Solanum tuberosum HOM05D008139 ORTHO05D009872 2.4e-16 89.0 83 54.2
Aqoxy4G01991 Aquilegia oxysepala HOM05D008139 ORTHO05D009872 3.1e-16 88.6 97 50.5
Potri.017G037400 Populus trichocarpa HOM05D008139 ORTHO05D009872 3.1e-16 88.6 64 68.8
SalBow8G2406 Salvia bowleyana HOM05D008139 ORTHO05D009872 9.0e-16 87.0 77 57.1
SalBow8G2479 Salvia bowleyana HOM05D008139 ORTHO05D009872 9.0e-16 87.0 77 57.1
MELO3C018806.2 Cucumis melo HOM05D008139 ORTHO05D009872 2.6e-15 85.5 85 49.4
Nitab4.5_0000790g0110 Nicotiana tabacum HOM05D008139 ORTHO05D009872 3.4e-15 85.1 89 52.8
CsaV3_7G003730 Cucumis sativus L. HOM05D008139 ORTHO05D009872 4.4e-15 84.7 93 46.2
Migut.N00505 Erythranthe guttata HOM05D008139 ORTHO05D009872 5.8e-15 84.3 87 47.1
Nitab4.5_0003246g0060 Nicotiana tabacum HOM05D008139 ORTHO05D009872 5.8e-15 84.3 89 50.6
Solyc12g089070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 5.8e-15 84.3 86 50.0
CAN.G1139.6 Capsicum annuum HOM05D008139 ORTHO05D009872 1.3e-14 83.2 78 57.7
Peaxi162Scf00057g00045 Petunia axillaris HOM05D008139 ORTHO05D009872 1.7e-14 82.8 89 52.8
CAN.G1126.30 Capsicum annuum HOM05D008139 ORTHO05D009872 2.2e-14 82.4 86 52.3
SGA_v2.0_scaffold48G18067 Striga asiatica HOM05D008139 ORTHO05D009872 2.2e-14 82.4 79 48.1
Migut.C00700 Erythranthe guttata HOM05D008139 ORTHO05D009872 2.9e-14 82.0 79 50.6
Nitab4.5_0000110g0510 Nicotiana tabacum HOM05D008139 ORTHO05D009872 6.4e-14 80.9 88 47.7
Nitab4.5_0002296g0050 Nicotiana tabacum HOM05D008139 ORTHO05D009872 7.1e-13 77.4 79 53.2
Solyc04g080070.1 Solanum lycopersicum HOM05D008139 ORTHO05D009872 1.3e-11 73.2 88 44.3
Sopen04g033660 Solanum pennellii HOM05D008139 ORTHO05D009872 1.3e-11 73.2 88 44.3
SGA_v2.0_scaffold374G50235 Striga asiatica HOM05D008139 ORTHO05D009872 1.7e-11 72.8 79 46.8
THA.LOC104816105 Tarenaya hassleriana HOM05D011011 ORTHO05D009872 3.0e-11 72.0 82 46.3
PGSC0003DMG400005169 Solanum tuberosum HOM05D008139 ORTHO05D009872 5.1e-11 71.2 88 44.3
BcaC02g07938 Brassica carinata HOM05D011011 ORTHO05D009872 1.3e-09 66.6 82 43.9
AT2G32360 Arabidopsis thaliana HOM05D011011 ORTHO05D009872 1.6e-09 66.2 82 45.1
AL4G27740 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 2.1e-09 65.9 82 43.9
BolC4t27657H Brassica oleracea HOM05D011011 ORTHO05D009872 2.8e-09 65.5 82 42.7
unitig_46.g17928 Utricularia gibba HOM05D008139 ORTHO05D009872 2.8e-09 65.5 77 41.6
Carub.0004s1371 Capsella rubella HOM05D011011 ORTHO05D009872 8.1e-09 63.9 78 44.9
AL125U10020 Arabidopsis lyrata HOM05D011011 ORTHO05D009872 1.1e-08 63.5 82 42.7
C04p61740 Brassica napus HOM05D011011 ORTHO05D009872 1.1e-08 63.5 82 41.5
A03p18150 Brassica napus HOM05D011011 ORTHO05D009872 1.4e-08 63.2 83 41.0
BraA03t11075Z Brassica rapa HOM05D011011 ORTHO05D009872 1.4e-08 63.2 83 41.0
CARHR126180 Cardamine hirsuta HOM05D011011 ORTHO05D009872 1.8e-08 62.8 78 44.9
BcaB01g03982 Brassica carinata HOM05D011011 ORTHO05D009872 4.0e-08 61.6 83 38.6
BcaC01g05908 Brassica carinata HOM05D011011 ORTHO05D009872 4.0e-08 61.6 83 38.6
C03p21180 Brassica napus HOM05D011011 ORTHO05D009872 4.0e-08 61.6 83 38.6
BcaB06g28588 Brassica carinata HOM05D011011 ORTHO05D009872 5.3e-08 61.2 82 40.2
BolC3t14501H Brassica oleracea HOM05D011011 ORTHO05D009872 9.0e-08 60.5 83 37.3
BcaB01g03981 Brassica carinata HOM05D011011 ORTHO05D009872 1.2e-07 60.1 83 39.8
Sp4g14730 Schrenkiella parvula HOM05D011011 ORTHO05D009872 1.2e-07 60.1 82 37.8
TAR626G1168 Trochodendron aralioides HOM05D008139 ORTHO05D009872 6.4e-06 54.3 93 38.7


User provided reference genes

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