Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 4.5e-36 154.1 78 100.0
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.7e-31 137.1 78 89.7
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 1.7e-19 99.0 78 61.5
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 2.3e-19 98.6 78 57.7
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 2.3e-19 98.6 79 65.8
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 3.8e-19 97.8 78 57.7
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 8.6e-19 96.7 78 57.7
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 8.6e-19 96.7 77 59.7
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.9e-18 95.5 79 59.5
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 1.9e-18 95.5 78 55.1
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.1e-17 92.0 78 57.7
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 2.1e-17 92.0 79 59.5
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.7e-17 90.9 74 56.8
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.7e-17 90.9 81 56.8
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.1e-17 90.5 81 56.8
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 6.1e-17 90.5 79 58.2
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 6.1e-17 90.5 81 56.8
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 8.0e-17 90.1 78 53.8
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 1.4e-16 89.4 78 56.4
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 1.4e-16 89.4 78 56.4
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.8e-16 89.0 78 52.6
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 2.3e-16 88.6 79 57.0
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 3.0e-16 88.2 75 57.3
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 4.0e-16 87.8 78 52.6
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 8.9e-16 86.7 71 57.7
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 8.9e-16 86.7 78 52.6
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.2e-15 86.3 71 57.7
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-15 85.5 75 54.7
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 4.4e-15 84.3 71 57.7
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 7.5e-15 83.6 79 57.0
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 2.2e-14 82.0 79 60.8
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.9e-14 80.9 51 64.7
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 4.9e-14 80.9 78 57.7
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 8.3e-14 80.1 79 53.2
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.8e-13 79.0 79 59.5
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 7.0e-13 77.0 95 48.4
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 7.0e-13 77.0 82 52.4
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 9.2e-13 76.6 95 48.4
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 9.2e-13 76.6 95 48.4
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 2.0e-12 75.5 95 47.4
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 7.8e-12 73.6 50 62.0
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 7.8e-12 73.6 95 47.4
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 1.7e-11 72.4 74 54.1
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 3.9e-11 71.2 48 64.6
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 3.9e-11 71.2 83 42.2
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 5.0e-11 70.9 74 47.3
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 5.0e-11 70.9 45 68.9
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 8.6e-11 70.1 78 52.6
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 1.9e-10 68.9 46 65.2
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 2.5e-10 68.6 68 54.4
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 5.6e-10 67.4 66 51.5
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 7.3e-10 67.0 51 64.7
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 4.7e-09 64.3 43 65.1
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 4.7e-09 64.3 70 50.0
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 1.0e-08 63.2 77 46.8
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 1.0e-08 63.2 51 54.9
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 1.8e-08 62.4 77 45.5
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 2.3e-08 62.0 60 46.7
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 3.1e-08 61.6 78 44.9
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 3.1e-08 61.6 78 44.9
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 3.1e-08 61.6 71 49.3
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 4.0e-08 61.2 65 50.8
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 5.2e-08 60.8 75 44.0
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 5.2e-08 60.8 75 44.0
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 5.2e-08 60.8 52 55.8
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 6.8e-08 60.5 75 44.0
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 6.8e-08 60.5 75 44.0
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 6.8e-08 60.5 77 44.2
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 6.8e-08 60.5 65 47.7
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 8.9e-08 60.1 64 46.9
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.2e-07 59.7 72 43.1
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 1.5e-07 59.3 74 43.2
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 1.5e-07 59.3 74 43.2
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 1.5e-07 59.3 74 43.2
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 2.0e-07 58.9 77 44.2
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 2.6e-07 58.5 76 43.4
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 2.6e-07 58.5 67 47.8
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 3.4e-07 58.2 77 42.9
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 3.4e-07 58.2 77 42.9
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 4.4e-07 57.8 77 41.6
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 4.4e-07 57.8 77 42.9
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 4.4e-07 57.8 78 43.6
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 4.4e-07 57.8 78 43.6
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 4.4e-07 57.8 78 43.6
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 4.4e-07 57.8 60 48.3
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 4.4e-07 57.8 69 46.4
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 5.8e-07 57.4 66 47.0
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 5.8e-07 57.4 70 42.9
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 7.5e-07 57.0 77 41.6
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.3e-06 56.2 61 49.2
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-06 56.2 69 46.4
Carub.0003s1849 Capsella rubella HOM05D004540 ORTHO05D004852 1.7e-06 55.8 39 56.4
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 2.2e-06 55.5 60 51.7
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 60 43.3
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 68 41.2
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 77 40.3
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 2.9e-06 55.1 77 40.3
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 3.7e-06 54.7 47 55.3
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.4e-06 53.9 67 41.8
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 8.3e-06 53.5 71 43.7


User provided reference genes

Program Settings