Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G105900 Populus trichocarpa HOM05D005188 ORTHO05D006153 4.6e-89 331.3 173 100.0
Potri.005G063300 Populus trichocarpa HOM05D005188 ORTHO05D006153 2.4e-85 318.9 173 94.8
Sabra05G0052500 Salix brachista HOM05D005188 ORTHO05D006153 2.2e-83 312.4 173 93.6
Thecc.01G132900 Theobroma cacao HOM05D005188 ORTHO05D006153 9.3e-74 280.4 174 86.2
Sabra07G0086700 Salix brachista HOM05D005188 ORTHO05D006153 2.7e-73 278.9 175 84.6
Gohir.D11G230800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 3.5e-73 278.5 175 85.7
Cfa002897 Carpinus fangiana HOM05D005188 ORTHO05D006153 1.0e-72 276.9 176 83.5
Gohir.A11G226800 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.0e-72 276.9 175 85.1
COL.COLO4_35748 Corchorus olitorius HOM05D005188 ORTHO05D006153 3.9e-72 275.0 174 85.6
Haze_25240 Corylus avellana HOM05D005188 ORTHO05D006153 5.1e-72 274.6 176 82.4
CiPaw.03G121400 Carya illinoinensis HOM05D005188 ORTHO05D006153 1.5e-71 273.1 176 83.0
QL02p001672 Quercus lobata HOM05D005188 ORTHO05D006153 1.9e-71 272.7 173 80.9
Gorai.003G066700 Gossypium raimondii HOM05D005188 ORTHO05D006153 4.3e-71 271.6 182 82.4
Manes.12G156000 Manihot esculenta HOM05D005188 ORTHO05D006153 5.6e-71 271.2 175 82.3
CANSAT01G0911 Cannabis sativa HOM05D005188 ORTHO05D006153 1.3e-70 270.0 175 84.0
TWI75G0084 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 1.6e-70 269.6 173 82.7
TAR381G0300 Trochodendron aralioides HOM05D005188 ORTHO05D006153 2.1e-70 269.2 175 80.6
CiPaw.04G081900 Carya illinoinensis HOM05D005188 ORTHO05D006153 2.8e-70 268.9 177 79.7
Lalb_Chr13g0296451 Lupinus albus HOM05D005188 ORTHO05D006153 1.1e-69 266.9 176 80.7
Cpa.g.sc3.345 Carica papaya HOM05D005188 ORTHO05D006153 1.4e-69 266.5 177 78.5
Lj1g0024625 Lotus japonicus HOM05D005188 ORTHO05D006153 4.0e-69 265.0 173 80.9
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 5.3e-69 264.6 176 82.4
TWI79G1553 Tripterygium wilfordii HOM05D005188 ORTHO05D006153 6.9e-69 264.2 173 79.8
MBI06_g39404_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 9.0e-69 263.8 174 79.9
ClCG01G015380 Citrullus lanatus HOM05D005188 ORTHO05D006153 1.5e-68 263.1 175 78.9
MELO3C008060.2 Cucumis melo HOM05D005188 ORTHO05D006153 3.4e-68 261.9 175 78.3
Medtr3g095540 Medicago truncatula HOM05D005188 ORTHO05D006153 3.4e-68 261.9 176 79.5
Dinv24366 Davidia involucrata HOM05D005188 ORTHO05D006153 5.8e-68 261.2 174 78.7
Ca_16917_v3 Cicer arietinum L. HOM05D005188 ORTHO05D006153 9.9e-68 260.4 174 77.6
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 1.7e-67 259.6 176 80.7
CsaV3_6G041600 Cucumis sativus L. HOM05D005188 ORTHO05D006153 2.2e-67 259.2 175 77.1
Ciclev10002687m.g Citrus clementina HOM05D005188 ORTHO05D006153 2.9e-67 258.8 175 81.1
TPR.G18740 Trifolium pratense HOM05D005188 ORTHO05D006153 2.9e-67 258.8 176 79.5
Hma1.2p1_0476F.1_g160790 Hydrangea macrophylla HOM05D005188 ORTHO05D006153 4.9e-67 258.1 175 78.3
Nn2g12180 Nelumbo nucifera HOM05D005188 ORTHO05D006153 8.4e-67 257.3 174 78.7
Cc10_g12590 Coffea canephora HOM05D005188 ORTHO05D006153 1.4e-66 256.5 173 75.7
Phvul.002G269400 Phaseolus vulgaris HOM05D005188 ORTHO05D006153 9.3e-66 253.8 175 77.1
PGR008G0006 Punica granatum HOM05D005188 ORTHO05D006153 6.0e-65 251.1 173 76.9
PGR119G0239 Punica granatum HOM05D005188 ORTHO05D006153 6.0e-65 251.1 173 76.9
VMungo0251G2948 Vigna mungo HOM05D005188 ORTHO05D006153 7.9e-65 250.8 176 77.8
Prupe.4G271200 Prunus persica HOM05D005188 ORTHO05D006153 2.3e-64 249.2 177 78.0
CDE08G0648 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 6.7e-64 247.7 174 73.6
CARHR277950 Cardamine hirsuta HOM05D005188 ORTHO05D006153 8.7e-64 247.3 173 74.0
Aqoxy5G02315 Aquilegia oxysepala HOM05D005188 ORTHO05D006153 1.1e-63 246.9 174 75.3
arahy.Tifrunner.gnm1.ann1.DJM1RY Arachis hypogaea HOM05D005188 ORTHO05D006153 1.9e-63 246.1 179 78.8
Migut.H00702 Erythranthe guttata HOM05D005188 ORTHO05D006153 1.9e-63 246.1 176 76.1
Glyma.04G215800 Glycine max HOM05D005188 ORTHO05D006153 1.9e-63 246.1 173 74.6
Oeu037826.1 Olea europaea HOM05D005188 ORTHO05D006153 1.9e-63 246.1 174 74.7
Glyma.06G150300 Glycine max HOM05D005188 ORTHO05D006153 2.5e-63 245.7 173 74.6
Sp2g27110 Schrenkiella parvula HOM05D005188 ORTHO05D006153 2.5e-63 245.7 173 74.0
Lj4g0001203 Lotus japonicus HOM05D005188 ORTHO05D006153 4.3e-63 245.0 174 77.0
arahy.Tifrunner.gnm1.ann1.V5WWJ8 Arachis hypogaea HOM05D005188 ORTHO05D006153 7.4e-63 244.2 179 77.7
BcaC01g02658 Brassica carinata HOM05D005188 ORTHO05D006153 9.6e-63 243.8 173 73.4
BcaC01g02659 Brassica carinata HOM05D005188 ORTHO05D006153 9.6e-63 243.8 173 73.4
AL8G41300 Arabidopsis lyrata HOM05D005188 ORTHO05D006153 1.3e-62 243.4 177 74.0
CSS0010064 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.3e-62 243.4 177 74.6
CSS0045275 Camellia sinensis var. sinensis HOM05D005188 ORTHO05D006153 1.3e-62 243.4 177 74.6
MSTRG.2649 Avicennia marina HOM05D005188 ORTHO05D006153 1.6e-62 243.0 174 76.4
Psat5g063680 Pisum sativum HOM05D005188 ORTHO05D006153 1.6e-62 243.0 176 76.1
AT5G64040 Arabidopsis thaliana HOM05D005188 ORTHO05D006153 2.1e-62 242.7 177 73.4
BcaB02g09793 Brassica carinata HOM05D005188 ORTHO05D006153 3.7e-62 241.9 173 72.8
CDE02G4401 Ceratophyllum demersum HOM05D005188 ORTHO05D006153 3.7e-62 241.9 174 73.0
Carub.0008s2482 Capsella rubella HOM05D005188 ORTHO05D006153 6.2e-62 241.1 177 72.9
Thhalv10005005m.g Eutrema salsugineum HOM05D005188 ORTHO05D006153 6.2e-62 241.1 173 72.3
Lj2A607T35 Lonicera japonica HOM05D005188 ORTHO05D006153 8.1e-62 240.7 174 72.4
MD15G1441800 Malus domestica HOM05D005188 ORTHO05D006153 8.1e-62 240.7 174 74.1
MBI03_g42548_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 1.8e-61 239.6 174 73.0
A06p30750 Brassica napus HOM05D005188 ORTHO05D006153 2.4e-61 239.2 173 72.8
Aa31LG1G17870 Aethionema arabicum HOM05D005188 ORTHO05D006153 5.3e-61 238.0 179 74.9
SGA_v2.0_scaffold370G50114 Striga asiatica HOM05D005188 ORTHO05D006153 6.9e-61 237.7 173 75.1
CAN.G792.16 Capsicum annuum HOM05D005188 ORTHO05D006153 9.0e-61 237.3 175 74.3
C09p09640 Brassica napus HOM05D005188 ORTHO05D006153 1.2e-60 236.9 173 73.4
SalBow1G2748 Salvia bowleyana HOM05D005188 ORTHO05D006153 2.0e-60 236.1 173 73.4
BcaB07g29717 Brassica carinata HOM05D005188 ORTHO05D006153 4.5e-60 235.0 173 71.7
MBI06_g27435_MAGBIO Magnolia biondii HOM05D005188 ORTHO05D006153 4.5e-60 235.0 149 81.2
MD01G1004300 Malus domestica HOM05D005188 ORTHO05D006153 4.5e-60 235.0 174 71.3
PGSC0003DMG400005805 Solanum tuberosum HOM05D005188 ORTHO05D006153 4.5e-60 235.0 177 74.0
Sed0019160 Sechium edule HOM05D005188 ORTHO05D006153 1.0e-59 233.8 177 70.1
Actinidia06616 Actinidia chinensis HOM05D005188 ORTHO05D006153 2.9e-59 232.3 176 74.4
DCAR_001211 Daucus carota HOM05D005188 ORTHO05D006153 2.9e-59 232.3 175 71.4
Hund23270 Selenicereus undatus HOM05D005188 ORTHO05D006153 2.9e-59 232.3 178 71.9
Solyc08g013670.3 Solanum lycopersicum HOM05D005188 ORTHO05D006153 4.9e-59 231.5 174 75.3
AUR62017881 Chenopodium quinoa HOM05D005188 ORTHO05D006153 6.5e-59 231.1 174 73.0
BolC9t53875H Brassica oleracea HOM05D005188 ORTHO05D006153 8.4e-59 230.7 184 69.6
C02p63110 Brassica napus HOM05D005188 ORTHO05D006153 1.1e-58 230.3 173 69.9
BolC2t12383H Brassica oleracea HOM05D005188 ORTHO05D006153 1.1e-58 230.3 173 69.9
Sopen08g004510 Solanum pennellii HOM05D005188 ORTHO05D006153 1.4e-58 229.9 173 74.6
BcaC03g18240 Brassica carinata HOM05D005188 ORTHO05D006153 1.9e-58 229.6 173 69.9
Ah.02g121530 Amaranthus hybridus HOM05D005188 ORTHO05D006153 4.2e-58 228.4 173 71.1
Nitab4.5_0000673g0170 Nicotiana tabacum HOM05D005188 ORTHO05D006153 9.3e-58 227.3 174 73.0
unitig_899.g14682 Utricularia gibba HOM05D005188 ORTHO05D006153 9.3e-58 227.3 174 70.7
Sed0010246 Sechium edule HOM05D005188 ORTHO05D006153 2.7e-57 225.7 174 70.7
Peaxi162Scf01257g00019 Petunia axillaris HOM05D005188 ORTHO05D006153 3.0e-56 222.2 183 67.8
FvH4_1g24360 Fragaria vesca HOM05D005188 ORTHO05D006153 3.9e-56 221.9 175 70.3
FAN19G1208 Fragaria x ananassa HOM05D005188 ORTHO05D006153 3.9e-56 221.9 175 70.3
ATR0987G005 Amborella trichopoda HOM05D005188 ORTHO05D006153 1.1e-55 220.3 178 68.5
Lsat_1_v5_gn_1_10061 Lactuca sativa HOM05D005188 ORTHO05D006153 1.9e-55 219.5 176 68.2
HanXRQChr04g0107551 Helianthus annuus HOM05D005188 ORTHO05D006153 3.3e-55 218.8 173 69.4
Atru.chr4.905 Acer truncatum HOM05D005188 ORTHO05D006153 4.3e-55 218.4 173 70.5
FAN28G1395 Fragaria x ananassa HOM05D002517 ORTHO05D003040 5.7e-55 218.0 173 69.4
BolC3t18491H Brassica oleracea HOM05D005188 ORTHO05D006153 9.6e-55 217.2 177 67.2
THA.LOC104800083 Tarenaya hassleriana HOM05D005188 ORTHO05D006153 1.6e-54 216.5 174 67.8
GSVIVG01026478001 Vitis vinifera HOM05D005188 ORTHO05D006153 6.2e-54 214.5 173 66.5
RcHm_v2.0_Chr2g0120891 Rosa chinensis HOM05D005188 ORTHO05D006153 8.2e-54 214.2 175 68.0
ECA247G1960 Erigeron canadensis HOM05D005188 ORTHO05D006153 1.8e-53 213.0 171 67.8
FAN26G2437 Fragaria x ananassa HOM05D002517 ORTHO05D006153 3.1e-53 212.2 175 69.1
Duzib264G0557 Durio zibethinus HOM05D005188 ORTHO05D006153 3.4e-52 208.8 145 81.4
Rhsim10G0133700 Rhododendron simsii HOM05D005188 ORTHO05D006153 2.9e-51 205.7 179 64.8
PSO541G2775 Papaver somniferum HOM05D005188 ORTHO05D006153 5.0e-51 204.9 173 63.0
vmacro12795 Vaccinium macrocarpon HOM05D005188 ORTHO05D006153 5.0e-51 204.9 179 65.4
Duzib147G0711 Durio zibethinus HOM05D005188 ORTHO05D006153 1.9e-50 203.0 145 80.0
HPP92_019391 Vanilla planifolia HOM05D005188 ORTHO05D006153 1.9e-50 203.0 175 66.3
A09p08510 Brassica napus HOM05D005188 ORTHO05D006153 4.2e-50 201.8 173 65.9
BraA09t36500Z Brassica rapa HOM05D005188 ORTHO05D006153 4.2e-50 201.8 173 65.9
PSO675G9377 Papaver somniferum HOM05D005188 ORTHO05D006153 9.3e-50 200.7 173 60.7
EL10Ac6g15302 Beta vulgaris HOM05D005188 ORTHO05D006153 4.6e-49 198.4 129 79.1
Oeu050119.1 Olea europaea HOM05D005188 ORTHO05D006153 3.3e-47 192.2 173 60.1
Eucgr.I00200 Eucalyptus grandis HOM05D005188 ORTHO05D006153 3.7e-46 188.7 149 73.8
Zm00001eb409220 Zea mays HOM05D005188 ORTHO05D006153 6.9e-45 184.5 128 72.7
Zm00001eb138650 Zea mays HOM05D005188 ORTHO05D006153 1.0e-43 180.6 151 62.3
C03p62290 Brassica napus HOM05D005188 ORTHO05D006153 1.7e-43 179.9 143 69.2
Os12g0189400 Oryza sativa ssp. japonica HOM05D005188 ORTHO05D006153 5.0e-43 178.3 110 80.0
BraA06t26017Z Brassica rapa HOM05D005188 ORTHO05D006153 4.2e-42 175.3 143 68.5
Duzib187G0538 Durio zibethinus HOM05D005188 ORTHO05D006153 1.8e-40 169.9 128 78.1
SEGI_16120 Sequoiadendron giganteum HOM05D005188 ORTHO05D006153 1.7e-38 163.3 166 55.4
Sc16g0003820 Simmondsia chinensis HOM05D005188 ORTHO05D006153 3.1e-37 159.1 145 64.8
SMO144G0055 Selaginella moellendorffii HOM05D005188 ORTHO05D006153 6.1e-33 144.8 82 79.3
BcaB04g17222 Brassica carinata HOM05D005188 ORTHO05D006153 3.9e-32 142.1 120 62.5
BcaB08g36594 Brassica carinata HOM05D005188 ORTHO05D006153 2.2e-30 136.3 74 87.8
BolC2t07163H Brassica oleracea HOM05D005188 ORTHO05D006153 6.3e-30 134.8 74 86.5
BolC7t41311H Brassica oleracea HOM05D005188 ORTHO05D006153 6.3e-30 134.8 72 88.9
BcaC04g18786 Brassica carinata HOM05D005188 ORTHO05D006153 2.4e-29 132.9 74 85.1
AUR62003566 Chenopodium quinoa HOM05D005188 ORTHO05D006153 1.7e-27 126.7 173 50.9
Nn5g28540 Nelumbo nucifera HOM05D005188 ORTHO05D006153 2.3e-24 116.3 102 64.7
Mapoly0116s0042 Marchantia polymorpha HOM05D005188 ORTHO05D006153 2.6e-23 112.8 114 52.6
Cre02.g082500 Chlamydomonas reinhardtii HOM05D005188 ORTHO05D006153 3.3e-23 112.5 119 52.9
BcaC03g13890 Brassica carinata HOM05D005188 ORTHO05D006153 4.1e-21 105.5 74 70.3
AagrBONN_evm.TU.Sc2ySwM_362.2803 Anthoceros agrestis HOM05D005188 ORTHO05D006153 7.0e-21 104.8 92 60.9
BraA02t09233Z Brassica rapa HOM05D005188 ORTHO05D006153 3.8e-19 99.0 116 55.2
Nitab4.5_0005544g0070 Nicotiana tabacum HOM05D005188 ORTHO05D006153 2.5e-18 96.3 110 58.2
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 1.0e-16 90.9 110 57.3
PRCOL_00004565 Prasinoderma coloniale HOM05D005188 ORTHO05D006153 1.0e-16 90.9 79 59.5
MCO09G058 Micromonas commoda HOM05D005188 ORTHO05D006153 3.0e-16 89.4 144 42.4
A02p43130 Brassica napus HOM05D005188 ORTHO05D006153 2.6e-15 86.3 101 53.5
CBR_g45633 Chara braunii HOM05D005188 ORTHO05D006153 4.8e-14 82.0 141 40.4
C02p10930 Brassica napus HOM05D005188 ORTHO05D006153 1.0e-08 64.3 30 90.0


User provided reference genes

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