Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G102600 Populus trichocarpa HOM05D006279 ORTHO05D008055 1.0e-51 206.5 105 100.0
Sabra07G0084300 Salix brachista HOM05D006279 ORTHO05D008055 1.5e-47 192.6 106 94.3
Sabra05G0055000 Salix brachista HOM05D006279 ORTHO05D008055 3.0e-43 178.3 107 86.0
Potri.005G066900 Populus trichocarpa HOM05D006279 ORTHO05D008055 3.3e-42 174.9 107 83.2
Thecc.08G189700 Theobroma cacao HOM05D006279 ORTHO05D008055 1.4e-32 142.9 107 68.2
Cpa.g.sc2692.1 Carica papaya HOM05D006279 ORTHO05D008055 4.1e-32 141.4 104 71.2
Haze_02674 Corylus avellana HOM05D006279 ORTHO05D008055 1.6e-31 139.4 108 66.7
Haze_02661 Corylus avellana HOM05D006279 ORTHO05D008055 4.5e-31 137.9 108 66.7
Atru.chr1.2785 Acer truncatum HOM05D006279 ORTHO05D008055 5.9e-31 137.5 104 69.2
Ca_13203_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 1.0e-30 136.7 97 69.1
Eucgr.I00130 Eucalyptus grandis HOM05D006279 ORTHO05D008055 2.2e-30 135.6 99 66.7
QL10p041722 Quercus lobata HOM05D006279 ORTHO05D008055 3.8e-30 134.8 106 65.1
Duzib177G0075 Durio zibethinus HOM05D006279 ORTHO05D008055 6.5e-30 134.0 107 65.4
Cfa011174 Carpinus fangiana HOM05D006279 ORTHO05D008055 1.5e-29 132.9 108 64.8
Ciclev10003637m.g Citrus clementina HOM05D006279 ORTHO05D008055 2.5e-29 132.1 106 67.9
Gohir.D05G287900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 3.2e-29 131.7 102 64.7
Gorai.009G302900 Gossypium raimondii HOM05D006279 ORTHO05D008055 3.2e-29 131.7 102 64.7
Gohir.A05G286900 Gossypium hirsutum HOM05D006279 ORTHO05D008055 4.2e-29 131.3 107 62.6
Manes.01G181300 Manihot esculenta HOM05D006279 ORTHO05D008055 5.5e-29 131.0 103 64.1
Dinv44192 Davidia involucrata HOM05D006279 ORTHO05D008055 7.2e-29 130.6 107 63.6
Psat6g191840 Pisum sativum HOM05D006279 ORTHO05D008055 2.1e-28 129.0 99 66.7
COL.COLO4_11288 Corchorus olitorius HOM05D006279 ORTHO05D008055 2.7e-28 128.6 106 63.2
TPR.G17035 Trifolium pratense HOM05D006279 ORTHO05D008055 3.6e-28 128.3 105 62.9
arahy.Tifrunner.gnm1.ann1.96G0FW Arachis hypogaea HOM05D006279 ORTHO05D008055 8.0e-28 127.1 102 63.7
arahy.Tifrunner.gnm1.ann1.YQI87S Arachis hypogaea HOM05D006279 ORTHO05D008055 8.0e-28 127.1 102 63.7
Phvul.008G125700 Phaseolus vulgaris HOM05D006279 ORTHO05D008055 8.0e-28 127.1 93 66.7
Hma1.2p1_0847F.1_g227850 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 1.8e-27 125.9 99 63.6
CiPaw.14G026200 Carya illinoinensis HOM05D006279 ORTHO05D008055 2.3e-27 125.6 108 63.0
Lj1g0019467 Lotus japonicus HOM05D006279 ORTHO05D008055 2.3e-27 125.6 96 64.6
TWI79G1313 Tripterygium wilfordii HOM05D006279 ORTHO05D008055 2.3e-27 125.6 106 63.2
Psat4g003200 Pisum sativum HOM05D006279 ORTHO05D008055 3.0e-27 125.2 99 64.6
Glyma.08G354200 Glycine max HOM05D006279 ORTHO05D008055 4.0e-27 124.8 101 60.4
Actinidia30262 Actinidia chinensis HOM05D006279 ORTHO05D008055 6.7e-27 124.0 101 58.4
TAR623G0329 Trochodendron aralioides HOM05D006279 ORTHO05D008055 6.7e-27 124.0 105 58.1
VMungo1383G1366 Vigna mungo HOM05D006279 ORTHO05D008055 6.7e-27 124.0 101 62.4
TAR369G0312 Trochodendron aralioides HOM05D006279 ORTHO05D008055 1.5e-26 122.9 104 57.7
Glyma.18G170600 Glycine max HOM05D006279 ORTHO05D008055 2.6e-26 122.1 91 65.9
CSS0005410 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 3.3e-26 121.7 106 59.4
CSS0021017 Camellia sinensis var. sinensis HOM05D006279 ORTHO05D008055 7.5e-26 120.6 106 58.5
FAN09G2945 Fragaria x ananassa HOM05D006279 ORTHO05D008055 9.7e-26 120.2 118 58.5
Lalb_Chr01g0022321 Lupinus albus HOM05D006279 ORTHO05D008055 1.3e-25 119.8 98 61.2
Oeu006489.1 Olea europaea HOM05D006279 ORTHO05D008055 1.3e-25 119.8 114 59.6
Peaxi162Scf00386g00058 Petunia axillaris HOM05D006279 ORTHO05D008055 1.7e-25 119.4 102 62.7
Solyc06g054590.3 Solanum lycopersicum HOM05D006279 ORTHO05D008055 1.7e-25 119.4 114 57.9
Sopen06g019660 Solanum pennellii HOM05D006279 ORTHO05D008055 1.7e-25 119.4 114 57.9
PGSC0003DMG400022672 Solanum tuberosum HOM05D006279 ORTHO05D008055 1.7e-25 119.4 109 58.7
MSTRG.20541 Avicennia marina HOM05D006279 ORTHO05D008055 2.8e-25 118.6 106 59.4
Eucgr.L03476 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.7e-25 118.2 77 70.1
Actinidia20026 Actinidia chinensis HOM05D006279 ORTHO05D008055 8.2e-25 117.1 107 59.8
CANSAT64G0511 Cannabis sativa HOM05D006279 ORTHO05D008055 8.2e-25 117.1 95 61.1
Peaxi162Scf00033g00134 Petunia axillaris HOM05D006279 ORTHO05D008055 8.2e-25 117.1 78 75.6
Sc09g0002260 Simmondsia chinensis HOM05D006279 ORTHO05D008055 8.2e-25 117.1 97 62.9
PGR119G2211 Punica granatum HOM05D006279 ORTHO05D008055 1.4e-24 116.3 83 65.1
RcHm_v2.0_Chr2g0163441 Rosa chinensis HOM05D006279 ORTHO05D008055 1.4e-24 116.3 118 57.6
THA.LOC104818424 Tarenaya hassleriana HOM05D006279 ORTHO05D008055 1.4e-24 116.3 108 60.2
Ah.06g190980 Amaranthus hybridus HOM05D006279 ORTHO05D008055 1.8e-24 115.9 97 58.8
PGSC0003DMG400030782 Solanum tuberosum HOM05D006279 ORTHO05D008055 1.8e-24 115.9 83 68.7
Cc09_g10080 Coffea canephora HOM05D006279 ORTHO05D008055 2.4e-24 115.5 116 55.2
FAN05G3461 Fragaria x ananassa HOM05D006279 ORTHO05D008055 5.3e-24 114.4 98 62.2
Nn2g15145 Nelumbo nucifera HOM05D006279 ORTHO05D008055 5.3e-24 114.4 104 59.6
CAN.G1592.9 Capsicum annuum HOM05D006279 ORTHO05D008055 7.0e-24 114.0 83 69.9
MD10G1003300 Malus domestica HOM05D006279 ORTHO05D008055 7.0e-24 114.0 105 61.9
arahy.Tifrunner.gnm1.ann1.BRZ89T Arachis hypogaea HOM05D006279 ORTHO05D008055 9.1e-24 113.6 96 60.4
Migut.B01200 Erythranthe guttata HOM05D006279 ORTHO05D008055 9.1e-24 113.6 78 69.2
vmacro12040 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 9.1e-24 113.6 100 58.0
vmacro13565 Vaccinium macrocarpon HOM05D006279 ORTHO05D008055 1.2e-23 113.2 91 60.4
GSVIVG01023542001 Vitis vinifera HOM05D006279 ORTHO05D008055 1.2e-23 113.2 97 60.8
MD09G1082400 Malus domestica HOM05D006279 ORTHO05D008055 1.6e-23 112.8 109 60.6
CARHR204140 Cardamine hirsuta HOM05D006279 ORTHO05D008055 2.0e-23 112.5 107 55.1
FvH4_6g45500 Fragaria vesca HOM05D006279 ORTHO05D008055 2.0e-23 112.5 105 60.0
FAN14G0828 Fragaria x ananassa HOM05D006279 ORTHO05D008055 2.0e-23 112.5 105 60.0
CANSAT78G0480 Cannabis sativa HOM05D006279 ORTHO05D008055 2.7e-23 112.1 94 61.7
MBI06_g37673_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.7e-23 112.1 76 69.7
MBI06_g46723_MAGBIO Magnolia biondii HOM05D006279 ORTHO05D008055 2.7e-23 112.1 76 69.7
Prupe.3G241300 Prunus persica HOM05D006279 ORTHO05D008055 2.7e-23 112.1 94 61.7
Eucgr.I00134 Eucalyptus grandis HOM05D006279 ORTHO05D008055 3.5e-23 111.7 76 65.8
Medtr1g098510 Medicago truncatula HOM05D006279 ORTHO05D008055 3.5e-23 111.7 100 58.0
SHI36067 Sapria himalayana HOM05D006279 ORTHO05D008055 7.7e-23 110.5 91 60.4
COL.COLO4_13057 Corchorus olitorius HOM05D006279 ORTHO05D008055 1.0e-22 110.2 104 56.7
BolC2t06340H Brassica oleracea HOM05D006279 ORTHO05D008055 1.3e-22 109.8 92 59.8
Eucgr.I00143 Eucalyptus grandis HOM05D006279 ORTHO05D008055 1.3e-22 109.8 76 64.5
Aqoxy2G01154 Aquilegia oxysepala HOM05D006279 ORTHO05D008055 1.7e-22 109.4 88 63.6
Nitab4.5_0000644g0080 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.7e-22 109.4 83 63.9
EL10Ac4g09617 Beta vulgaris HOM05D006279 ORTHO05D008055 2.2e-22 109.0 108 52.8
BolC9t59565H Brassica oleracea HOM05D004285 ORTHO05D005176 2.2e-22 109.0 89 60.7
BraA10t44844Z Brassica rapa HOM05D006279 ORTHO05D008055 2.2e-22 109.0 89 60.7
Nitab4.5_0001688g0060 Nicotiana tabacum HOM05D006279 ORTHO05D008055 2.2e-22 109.0 81 66.7
BcaB05g21561 Brassica carinata HOM05D006279 ORTHO05D008055 2.9e-22 108.6 92 58.7
A10p27950 Brassica napus HOM05D004285 ORTHO05D005176 3.8e-22 108.2 89 60.7
Nitab4.5_0000829g0220 Nicotiana tabacum HOM05D006279 ORTHO05D008055 3.8e-22 108.2 83 63.9
Thhalv10015068m.g Eutrema salsugineum HOM05D006279 ORTHO05D008055 6.5e-22 107.5 109 55.0
BraA02t04974Z Brassica rapa HOM05D006279 ORTHO05D008055 1.1e-21 106.7 92 57.6
BcaC03g13247 Brassica carinata HOM05D006279 ORTHO05D008055 1.5e-21 106.3 110 53.6
C02p03790 Brassica napus HOM05D006279 ORTHO05D008055 1.5e-21 106.3 110 53.6
C09p68090 Brassica napus HOM05D004285 ORTHO05D005176 1.9e-21 105.9 92 57.6
C09p68110 Brassica napus HOM05D006279 ORTHO05D008055 1.9e-21 105.9 92 57.6
C09p68150 Brassica napus HOM05D006279 ORTHO05D008055 1.9e-21 105.9 92 57.6
AUR62000510 Chenopodium quinoa HOM05D006279 ORTHO05D008055 1.9e-21 105.9 76 64.5
DCAR_026025 Daucus carota HOM05D006279 ORTHO05D008055 2.5e-21 105.5 75 68.0
HPP92_013811 Vanilla planifolia HOM05D006279 ORTHO05D008055 2.5e-21 105.5 88 59.1
ATR0824G232 Amborella trichopoda HOM05D006279 ORTHO05D008055 3.2e-21 105.1 83 65.1
AT5G09270 Arabidopsis thaliana HOM05D006279 ORTHO05D008055 3.2e-21 105.1 102 54.9
Carub.0006s0782 Capsella rubella HOM05D006279 ORTHO05D008055 3.2e-21 105.1 90 58.9
AUR62006855 Chenopodium quinoa HOM05D006279 ORTHO05D008055 4.2e-21 104.8 76 63.2
AL6G19660 Arabidopsis lyrata HOM05D006279 ORTHO05D008055 7.2e-21 104.0 108 52.8
BcaB08g37221 Brassica carinata HOM05D006279 ORTHO05D008055 7.2e-21 104.0 90 57.8
Sp6g34040 Schrenkiella parvula HOM05D006279 ORTHO05D008055 9.4e-21 103.6 109 51.4
C09p68050 Brassica napus HOM05D006279 ORTHO05D008055 1.2e-20 103.2 92 56.5
ClCG02G000360 Citrullus lanatus HOM05D006279 ORTHO05D008055 1.2e-20 103.2 93 55.9
CAN.G256.17 Capsicum annuum HOM05D006279 ORTHO05D008055 1.6e-20 102.8 65 72.3
Nitab4.5_0010800g0010 Nicotiana tabacum HOM05D006279 ORTHO05D008055 1.6e-20 102.8 109 52.3
HanXRQChr10g0308251 Helianthus annuus HOM05D006279 ORTHO05D008055 8.0e-20 100.5 103 48.5
CsaV3_2G019480 Cucumis sativus L. HOM05D006279 ORTHO05D008055 1.4e-19 99.8 96 53.1
MELO3C023226.2 Cucumis melo HOM05D006279 ORTHO05D008055 2.3e-19 99.0 81 58.0
Lsat_1_v5_gn_5_86080 Lactuca sativa HOM05D006279 ORTHO05D008055 5.2e-19 97.8 91 53.8
Rhsim10G0172600 Rhododendron simsii HOM05D006279 ORTHO05D008055 1.5e-18 96.3 72 61.1
Atru.chr9.833 Acer truncatum HOM05D000003 ORTHO05D000126 2.6e-18 95.5 60 70.0
Aa31LG3G17730 Aethionema arabicum HOM05D006279 ORTHO05D008055 1.3e-17 93.2 105 45.7
arahy.Tifrunner.gnm1.ann1.BUL9CE Arachis hypogaea HOM05D006279 ORTHO05D008055 1.7e-17 92.8 58 74.1
Sed0009157 Sechium edule HOM05D006279 ORTHO05D008055 3.7e-17 91.7 103 48.5
Os01g0861000 Oryza sativa ssp. japonica HOM05D006279 ORTHO05D008055 5.9e-15 84.3 79 51.9
COL.COLO4_36340 Corchorus olitorius HOM05D006279 ORTHO05D008055 3.8e-14 81.6 68 55.9
SEGI_20234 Sequoiadendron giganteum HOM05D006279 ORTHO05D008055 1.9e-13 79.3 68 52.9
Pp3c8_7150 Physcomitrium patens HOM05D006279 ORTHO05D008055 6.1e-12 74.3 82 46.3
Mapoly0027s0076 Marchantia polymorpha HOM05D006279 ORTHO05D008055 6.8e-11 70.9 66 47.0
Sopen01g029410 Solanum pennellii HOM05D006279 ORTHO05D008055 2.0e-10 69.3 68 48.5
Hma1.2p1_4173F.1_g338420 Hydrangea macrophylla HOM05D006279 ORTHO05D008055 3.7e-09 65.1 52 69.2
Oeu062074.1 Olea europaea HOM05D013196 ORTHO05D010523 7.7e-07 57.4 51 58.8
Ca_10674_v3 Cicer arietinum L. HOM05D006279 ORTHO05D008055 1.0e-06 57.0 46 67.4


User provided reference genes

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