Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 3.2e-284 981.1 500 100.0
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 7.1e-260 900.2 501 91.0
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.0e-253 879.8 500 89.2
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 3.5e-206 721.8 399 90.5
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 6.8e-186 654.4 466 70.0
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 2.7e-182 642.5 499 66.7
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 3.0e-181 639.0 471 70.1
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 1.5e-180 636.7 495 67.1
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 1.9e-180 636.3 498 66.7
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 3.6e-179 632.1 498 66.3
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.8e-178 629.8 506 65.6
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 5.2e-178 628.2 486 66.0
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 8.9e-178 627.5 469 68.7
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 1.5e-177 626.7 506 65.2
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 2.0e-177 626.3 499 66.5
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 9.9e-177 624.0 468 67.1
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 1.7e-176 623.2 469 67.6
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 2.9e-176 622.5 491 65.8
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 4.9e-176 621.7 509 64.6
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 4.2e-175 618.6 472 66.5
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 7.1e-175 617.8 497 63.8
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 9.2e-175 617.5 499 64.9
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 3.5e-174 615.5 468 66.9
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 3.5e-174 615.5 508 64.4
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.6e-174 615.1 494 64.8
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.3e-173 612.8 498 65.1
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 6.6e-173 611.3 445 68.5
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 8.7e-173 610.9 469 66.3
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 8.7e-173 610.9 469 66.3
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 1.1e-172 610.5 484 65.3
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 1.5e-172 610.1 466 68.0
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 1.5e-172 610.1 467 66.2
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 2.5e-172 609.4 473 66.0
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 3.3e-172 609.0 476 65.3
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 4.3e-172 608.6 501 64.3
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 7.3e-172 607.8 469 66.1
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 9.6e-172 607.4 482 65.6
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.2e-171 607.1 470 67.4
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 3.6e-171 605.5 488 65.2
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 8.1e-171 604.4 484 65.3
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.8e-170 603.2 482 64.9
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.4e-170 602.8 490 64.1
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 4.0e-170 602.1 486 64.4
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 6.9e-170 601.3 462 65.8
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.0e-169 599.7 469 64.8
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 2.0e-169 599.7 511 61.8
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 2.6e-169 599.4 493 62.3
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 2.6e-169 599.4 475 65.3
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 1.3e-168 597.0 497 62.2
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 1.7e-168 596.7 470 65.3
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 1.7e-168 596.7 511 61.6
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 4.9e-168 595.1 467 65.7
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 6.4e-168 594.7 482 62.7
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 1.1e-167 594.0 500 61.0
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 1.9e-167 593.2 474 62.2
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 3.2e-167 592.4 501 61.9
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 5.4e-167 591.7 500 60.6
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 7.1e-167 591.3 491 60.1
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 1.2e-166 590.5 504 61.9
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 1.2e-166 590.5 491 59.7
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 1.6e-166 590.1 503 61.0
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 2.7e-166 589.3 471 64.8
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 3.5e-166 589.0 467 64.9
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 4.6e-166 588.6 504 61.9
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 7.8e-166 587.8 504 61.1
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 3.0e-165 585.9 496 60.9
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 3.0e-165 585.9 478 60.9
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.3e-164 582.0 515 61.9
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 7.3e-164 581.3 498 59.8
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 7.3e-164 581.3 498 59.8
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 9.6e-164 580.9 506 59.7
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 1.3e-163 580.5 472 61.4
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 2.1e-163 579.7 497 61.4
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 3.6e-163 578.9 493 61.7
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 8.1e-163 577.8 499 60.7
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 8.1e-163 577.8 499 60.7
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 1.1e-162 577.4 478 60.7
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 1.4e-162 577.0 468 61.5
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 2.4e-162 576.2 477 62.3
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.0e-161 573.2 447 64.9
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 2.6e-161 572.8 517 58.6
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 9.9e-161 570.9 479 59.3
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 4.9e-160 568.5 506 57.3
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 8.4e-160 567.8 524 57.6
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.9e-156 556.6 424 65.6
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 2.1e-155 553.1 517 57.4
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.8e-155 552.0 443 63.4
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 5.3e-154 548.5 485 60.4
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 6.4e-152 541.6 499 58.7
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 2.8e-147 526.2 425 61.2
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.1e-146 524.2 427 61.6
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 1.4e-143 513.8 484 55.4
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 2.5e-143 513.1 564 52.3
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.3e-140 502.3 489 55.0
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 2.8e-139 499.6 504 54.8
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.1e-138 495.7 472 57.0
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 5.9e-137 491.9 403 64.5
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 3.6e-134 482.6 475 54.3
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 2.4e-130 469.9 405 59.3
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.6e-126 456.1 443 56.0
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 2.0e-124 450.3 491 53.0
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 2.3e-117 426.8 441 51.2
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.7e-115 420.6 454 49.1
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 2.2e-115 420.2 353 63.7
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 2.3e-109 400.2 267 74.9
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 7.0e-98 362.1 229 76.9
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.9e-88 329.7 267 63.3
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.6e-88 328.6 240 64.6
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 8.6e-88 328.6 240 64.6
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 4.7e-86 322.8 201 77.1
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.4e-85 321.2 202 76.2
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 4.6e-81 306.2 295 57.3
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 4.9e-75 286.2 310 46.1
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 1.0e-72 278.5 326 47.2
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 8.6e-72 275.4 239 60.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 2.6e-68 263.8 188 69.7
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.7e-67 261.2 195 66.2
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 2.2e-67 260.8 319 46.1
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.1e-62 244.2 178 67.4
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 8.1e-62 242.3 225 55.6
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.8e-61 241.1 214 59.3
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 3.1e-61 240.4 253 49.4
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 9.9e-60 235.3 214 59.8
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.4e-58 229.6 223 55.2
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.7e-51 208.0 158 65.2
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 8.4e-51 205.7 171 61.4
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 1.9e-47 194.5 155 60.6
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 9.6e-39 165.6 425 27.3
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 1.4e-34 151.8 505 29.5
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 7.9e-33 146.0 139 56.8
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.4e-29 135.2 222 40.1
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.9e-26 124.8 154 46.8
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.1e-25 121.3 141 51.1
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 8.2e-22 109.4 141 43.3
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 2.5e-18 97.8 55 81.8
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.2e-17 95.5 100 51.0
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 2.1e-17 94.7 266 32.7
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 5.3e-13 80.1 62 62.9
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 9.1e-13 79.3 153 37.3
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 6.5e-11 73.2 54 57.4
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 4.7e-09 67.0 62 64.5
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 6.1e-09 66.6 619 20.2
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-07 62.4 62 50.0
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 2.0e-07 61.6 76 44.7
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.8e-06 57.8 89 41.6


User provided reference genes

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