Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G100800 Populus trichocarpa HOM05D006319 ORTHO05D007963 8.2e-135 483.8 256 100.0
TWI31G0926 Tripterygium wilfordii HOM05D006319 ORTHO05D007963 2.9e-84 315.8 258 69.8
Manes.12G159300 Manihot esculenta HOM05D006319 ORTHO05D007963 6.1e-82 308.1 253 68.4
QL10p041175 Quercus lobata HOM05D006319 ORTHO05D007963 2.3e-81 306.2 271 63.8
Eucgr.H05122 Eucalyptus grandis HOM05D006319 ORTHO05D007963 4.1e-78 295.4 256 65.2
Thecc.01G138200 Theobroma cacao HOM05D006319 ORTHO05D007963 1.6e-77 293.5 256 66.0
CiPaw.04G079200 Carya illinoinensis HOM05D006319 ORTHO05D007963 2.3e-76 289.7 243 66.3
Ciclev10002322m.g Citrus clementina HOM05D006319 ORTHO05D007963 5.0e-76 288.5 256 62.9
Dinv05221 Davidia involucrata HOM05D006319 ORTHO05D007963 5.0e-76 288.5 244 65.2
Atru.chr4.1000 Acer truncatum HOM05D006319 ORTHO05D007963 6.6e-76 288.1 239 65.3
PGR102G0633 Punica granatum HOM05D006319 ORTHO05D007963 1.9e-75 286.6 257 65.4
Duzib187G0662 Durio zibethinus HOM05D006319 ORTHO05D007963 4.3e-75 285.4 256 65.2
MELO3C023216.2 Cucumis melo HOM05D006319 ORTHO05D007963 8.0e-74 281.2 187 77.0
CANSAT01G1475 Cannabis sativa HOM05D006319 ORTHO05D007963 1.1e-73 280.8 224 66.5
VMungo0464G0362 Vigna mungo HOM05D006319 ORTHO05D007963 1.1e-73 280.8 256 61.7
Prupe.4G276300 Prunus persica HOM05D006319 ORTHO05D007963 1.4e-73 280.4 226 66.4
COL.COLO4_35821 Corchorus olitorius HOM05D006319 ORTHO05D007963 3.1e-73 279.3 184 78.3
Cpa.g.sc37.12 Carica papaya HOM05D006319 ORTHO05D007963 4.0e-73 278.9 273 60.8
ClCG02G000280 Citrullus lanatus HOM05D005757 ORTHO05D007090 5.2e-73 278.5 187 76.5
Hma1.2p1_0236F.1_g099250 Hydrangea macrophylla HOM05D006319 ORTHO05D007963 5.2e-73 278.5 226 68.1
CsaV3_2G019570 Cucumis sativus L. HOM05D006319 ORTHO05D007963 1.2e-72 277.3 189 75.1
MD01G1000300 Malus domestica HOM05D006319 ORTHO05D007963 1.2e-72 277.3 191 74.9
vmacro18688 Vaccinium macrocarpon HOM05D006319 ORTHO05D007963 1.2e-72 277.3 231 64.1
CSS0021790 Camellia sinensis var. sinensis HOM05D006319 ORTHO05D007963 2.0e-72 276.6 240 64.6
AUR62006869 Chenopodium quinoa HOM05D006319 ORTHO05D007963 4.4e-72 275.4 258 62.8
Glyma.06G156100 Glycine max HOM05D006319 ORTHO05D007963 7.5e-72 274.6 232 66.4
GSVIVG01022331001 Vitis vinifera HOM05D006319 ORTHO05D007963 7.5e-72 274.6 192 75.5
Phvul.009G154200 Phaseolus vulgaris HOM05D006319 ORTHO05D007963 1.3e-71 273.9 252 60.7
Aqoxy6G00315 Aquilegia oxysepala HOM05D006319 ORTHO05D007963 2.2e-71 273.1 239 62.8
AUR62000524 Chenopodium quinoa HOM05D006319 ORTHO05D007963 2.2e-71 273.1 255 62.7
RcHm_v2.0_Chr2g0122611 Rosa chinensis HOM05D006319 ORTHO05D007963 4.9e-71 271.9 223 66.8
Hund07232 Selenicereus undatus HOM05D006319 ORTHO05D007963 1.1e-70 270.8 206 69.4
Lj7A582T32 Lonicera japonica HOM05D006319 ORTHO05D007963 1.4e-70 270.4 163 83.4
Gorai.011G118400 Gossypium raimondii HOM05D006319 ORTHO05D007963 1.9e-70 270.0 223 66.4
Actinidia16521 Actinidia chinensis HOM05D006319 ORTHO05D007963 4.1e-70 268.9 237 63.3
Lj1g0009956 Lotus japonicus HOM05D006319 ORTHO05D007963 9.2e-70 267.7 221 67.0
Lalb_Chr08g0238171 Lupinus albus HOM05D006319 ORTHO05D007963 1.6e-69 266.9 228 63.6
FvH4_1g24980 Fragaria vesca HOM05D006319 ORTHO05D007963 2.7e-69 266.2 216 68.5
FAN23G2801 Fragaria x ananassa HOM05D006319 ORTHO05D007963 2.7e-69 266.2 216 68.1
Potri.005G068500 Populus trichocarpa HOM05D006319 ORTHO05D007963 2.7e-69 266.2 259 64.1
QL10p041464 Quercus lobata HOM05D006319 ORTHO05D007963 2.7e-69 266.2 171 77.8
Sc02g0003550 Simmondsia chinensis HOM05D006319 ORTHO05D007963 1.0e-68 264.2 232 64.7
EL10Ac4g09632 Beta vulgaris HOM05D006319 ORTHO05D007963 2.3e-68 263.1 247 62.3
Nn1g08971 Nelumbo nucifera HOM05D006319 ORTHO05D007963 2.3e-68 263.1 165 78.2
Glyma.04G209900 Glycine max HOM05D006319 ORTHO05D007963 5.1e-68 261.9 226 63.7
DCAR_009594 Daucus carota HOM05D006319 ORTHO05D007963 2.5e-67 259.6 193 69.4
Psat5g060360 Pisum sativum HOM05D006319 ORTHO05D007963 4.3e-67 258.8 239 62.3
Carub.0004s0957 Capsella rubella HOM05D006319 ORTHO05D007963 9.5e-67 257.7 239 61.1
FAN19G2853 Fragaria x ananassa HOM05D006319 ORTHO05D007963 9.5e-67 257.7 233 63.9
THA.LOC104826346 Tarenaya hassleriana HOM05D006319 ORTHO05D007963 2.8e-66 256.1 193 68.4
TAR628G0979 Trochodendron aralioides HOM05D006319 ORTHO05D007963 1.1e-65 254.2 289 53.3
arahy.Tifrunner.gnm1.ann1.7TU5G5 Arachis hypogaea HOM05D006319 ORTHO05D007963 1.4e-65 253.8 190 68.4
Nitab4.5_0004105g0090 Nicotiana tabacum HOM05D006319 ORTHO05D007963 2.3e-65 253.1 193 67.9
Medtr3g096750 Medicago truncatula HOM05D006319 ORTHO05D007963 3.1e-65 252.7 256 58.2
BcaB01g03112 Brassica carinata HOM05D006319 ORTHO05D007963 5.2e-65 251.9 237 58.6
Thhalv10017176m.g Eutrema salsugineum HOM05D006319 ORTHO05D007963 5.2e-65 251.9 245 59.2
AT2G28605 Arabidopsis thaliana HOM05D006319 ORTHO05D007963 8.9e-65 251.1 226 63.7
Solyc04g009420.3 Solanum lycopersicum HOM05D006319 ORTHO05D007963 8.9e-65 251.1 194 66.5
arahy.Tifrunner.gnm1.ann1.B4AV5R Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-64 250.8 256 57.0
BolC4t27297H Brassica oleracea HOM05D006319 ORTHO05D007963 1.5e-64 250.4 237 59.9
FAN28G2219 Fragaria x ananassa HOM05D006319 ORTHO05D007963 1.5e-64 250.4 233 62.2
Sopen04g004550 Solanum pennellii HOM05D006319 ORTHO05D007963 1.5e-64 250.4 193 67.4
A04p21670 Brassica napus HOM05D006319 ORTHO05D007963 3.4e-64 249.2 238 60.1
Cc02_g33910 Coffea canephora HOM05D006319 ORTHO05D007963 3.4e-64 249.2 235 60.9
arahy.Tifrunner.gnm1.ann1.P5PFFU Arachis hypogaea HOM05D006319 ORTHO05D007963 4.4e-64 248.8 257 57.6
BcaC02g08157 Brassica carinata HOM05D006319 ORTHO05D007963 4.4e-64 248.8 238 60.1
C04p57790 Brassica napus HOM05D006319 ORTHO05D007963 4.4e-64 248.8 238 60.1
PGSC0003DMG400032538 Solanum tuberosum HOM05D006319 ORTHO05D007963 4.4e-64 248.8 230 60.9
Aa31LG5G7620 Aethionema arabicum HOM05D005759 ORTHO05D007172 5.8e-64 248.4 226 60.6
Nitab4.5_0013462g0010 Nicotiana tabacum HOM05D006319 ORTHO05D007963 5.8e-64 248.4 193 66.8
A03p26290 Brassica napus HOM05D006319 ORTHO05D007963 7.5e-64 248.1 194 67.0
Sp4g11430 Schrenkiella parvula HOM05D006319 ORTHO05D007963 7.5e-64 248.1 233 59.2
AL4G23100 Arabidopsis lyrata HOM05D006319 ORTHO05D007963 9.9e-64 247.7 231 61.0
BcaC01g04984 Brassica carinata HOM05D006319 ORTHO05D007963 9.9e-64 247.7 205 64.9
BcaB06g28232 Brassica carinata HOM05D006319 ORTHO05D007963 1.3e-63 247.3 190 66.8
Eucgr.H02106 Eucalyptus grandis HOM05D006319 ORTHO05D007963 2.2e-63 246.5 256 58.2
Migut.H00824 Erythranthe guttata HOM05D006319 ORTHO05D007963 2.9e-63 246.1 192 65.1
BraA04t17731Z Brassica rapa HOM05D006319 ORTHO05D007963 3.7e-63 245.7 238 59.2
arahy.Tifrunner.gnm1.ann1.4SM61H Arachis hypogaea HOM05D006319 ORTHO05D007963 4.9e-63 245.4 255 55.7
C03p31420 Brassica napus HOM05D006319 ORTHO05D007963 4.9e-63 245.4 222 61.3
BraA03t11843Z Brassica rapa HOM05D006319 ORTHO05D007963 4.9e-63 245.4 194 66.5
CARHR121630 Cardamine hirsuta HOM05D006319 ORTHO05D007963 1.1e-62 244.2 238 59.7
MSTRG.23490 Avicennia marina HOM05D006319 ORTHO05D007963 1.4e-62 243.8 264 53.4
SalBow1G4836 Salvia bowleyana HOM05D006319 ORTHO05D007963 4.1e-62 242.3 165 71.5
Ah.06g191080 Amaranthus hybridus HOM05D006319 ORTHO05D007963 9.2e-62 241.1 205 64.4
PSO782G1065 Papaver somniferum HOM05D006319 ORTHO05D007963 9.2e-62 241.1 212 59.9
Oeu011026.1 Olea europaea HOM05D006319 ORTHO05D007963 4.6e-61 238.8 251 55.4
CAN.G186.2 Capsicum annuum HOM05D006319 ORTHO05D007963 6.0e-61 238.4 218 59.6
MBI06_g35206_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 1.3e-60 237.3 192 67.2
CDE08G0565 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 3.0e-60 236.1 198 67.2
Zm00001eb422700 Zea mays HOM05D006319 ORTHO05D007963 3.9e-60 235.7 160 72.5
SGA_v2.0_scaffold273G46467 Striga asiatica HOM05D006319 ORTHO05D007963 5.1e-60 235.3 241 56.0
BolC3t15489H Brassica oleracea HOM05D006319 ORTHO05D007963 2.5e-59 233.0 166 69.9
unitig_899.g15151 Utricularia gibba HOM05D006319 ORTHO05D007963 2.8e-58 229.6 248 51.6
HPP92_009279 Vanilla planifolia HOM05D006319 ORTHO05D007963 4.4e-56 222.2 163 68.7
ECA246G1987 Erigeron canadensis HOM05D000001 ORTHO05D000003 8.4e-55 218.0 201 58.2
HanXRQChr12g0378071 Helianthus annuus HOM05D006319 ORTHO05D007963 5.4e-54 215.3 229 55.0
Peaxi162Scf00842g00214 Petunia axillaris HOM05D006319 ORTHO05D007963 6.6e-52 208.4 140 72.1
ATR0584G200 Amborella trichopoda HOM05D006319 ORTHO05D007963 1.1e-51 207.6 250 52.4
arahy.Tifrunner.gnm1.ann1.E0QW5U Arachis hypogaea HOM05D006319 ORTHO05D007963 2.5e-51 206.5 257 51.8
arahy.Tifrunner.gnm1.ann1.GQG991 Arachis hypogaea HOM05D006319 ORTHO05D007963 3.6e-50 202.6 163 64.4
Rhsim01G0141500 Rhododendron simsii HOM05D006319 ORTHO05D007963 2.2e-47 193.4 185 56.2
SEGI_06099 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.2e-45 187.6 157 59.9
SEGI_37383 Sequoiadendron giganteum HOM05D006319 ORTHO05D007963 1.2e-45 187.6 157 59.9
Lsat_1_v5_gn_5_34560 Lactuca sativa HOM05D006319 ORTHO05D007963 7.3e-43 178.3 167 59.9
AagrBONN_evm.TU.Sc2ySwM_228.2950 Anthoceros agrestis HOM05D006319 ORTHO05D007963 8.4e-39 164.9 159 52.2
Gohir.D10G108000 Gossypium hirsutum HOM05D006319 ORTHO05D007963 1.4e-38 164.1 223 47.1
Gohir.A10G068160 Gossypium hirsutum HOM05D006319 ORTHO05D007963 2.7e-37 159.8 223 46.2
Pp3c8_18060 Physcomitrium patens HOM05D006319 ORTHO05D007963 6.0e-37 158.7 184 50.0
Ca_16986_v3 Cicer arietinum L. HOM05D001650 ORTHO05D001592 4.0e-33 146.0 93 77.4
SMO117G0258 Selaginella moellendorffii HOM05D006319 ORTHO05D007963 1.5e-32 144.1 158 47.5
Manes.12G147800 Manihot esculenta HOM05D006319 ORTHO05D007963 2.2e-31 140.2 147 61.9
CBR_g49982 Chara braunii HOM05D006319 ORTHO05D007963 4.2e-30 136.0 170 44.1
FAN23G0464 Fragaria x ananassa HOM05D006319 ORTHO05D007963 4.2e-30 136.0 84 78.6
TPR.G10777 Trifolium pratense HOM05D006319 ORTHO05D007963 7.1e-30 135.2 82 79.3
Mapoly0092s0018 Marchantia polymorpha HOM05D006319 ORTHO05D007963 1.6e-29 134.0 156 47.4
FAN26G1803 Fragaria x ananassa HOM05D001650 ORTHO05D001592 2.1e-26 123.6 88 70.5
arahy.Tifrunner.gnm1.ann1.PNID9I Arachis hypogaea HOM05D006319 ORTHO05D007963 1.1e-25 121.3 107 61.7
Cre16.g678851 Chlamydomonas reinhardtii HOM05D006319 ORTHO05D007963 3.1e-25 119.8 136 44.9
arahy.Tifrunner.gnm1.ann1.Q7YENP Arachis hypogaea HOM05D006319 ORTHO05D007963 1.2e-24 117.9 107 60.7
TPR.G33590 Trifolium pratense HOM05D001650 ORTHO05D001592 1.2e-24 117.9 157 51.0
arahy.Tifrunner.gnm1.ann1.949H7S Arachis hypogaea HOM05D006319 ORTHO05D007963 2.0e-24 117.1 107 60.7
AagrBONN_evm.TU.Sc2ySwM_362.516 Anthoceros agrestis HOM05D005157 ORTHO05D006652 2.3e-20 103.6 96 57.3
Os04g0434900 Oryza sativa ssp. japonica HOM05D006319 ORTHO05D007963 6.7e-20 102.1 69 71.0
arahy.Tifrunner.gnm1.ann1.RE08FE Arachis hypogaea HOM05D006319 ORTHO05D007963 2.2e-18 97.1 122 48.4
MCO01G211 Micromonas commoda HOM05D006319 ORTHO05D007963 6.5e-15 85.5 135 37.8
arahy.Tifrunner.gnm1.ann1.I50TU7 Arachis hypogaea HOM05D006319 ORTHO05D007963 6.1e-13 79.0 118 44.1
CDE08G0611 Ceratophyllum demersum HOM05D006319 ORTHO05D007963 2.5e-11 73.6 92 58.7
PRCOL_00004434 Prasinoderma coloniale HOM05D006319 ORTHO05D007963 8.2e-10 68.6 100 40.0
MBI17_g01556_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 2.9e-07 60.1 105 42.9
MBI11_g02539_MAGBIO Magnolia biondii HOM05D006319 ORTHO05D007963 5.0e-07 59.3 85 49.4


User provided reference genes

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