Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G098300 Populus trichocarpa HOM05D012218 ORTHO05D017165 0.0e+00 1269.2 745 100.0
Sabra07G0081700 Salix brachista HOM05D012218 ORTHO05D017165 6.0e-303 1043.9 749 85.7
Thecc.01G142200 Theobroma cacao HOM05D012218 ORTHO05D010844 1.6e-42 178.7 834 28.5
Gohir.A05G382500 Gossypium hirsutum HOM05D012218 ORTHO05D010844 5.6e-35 153.7 810 28.5
Gorai.012G037100 Gossypium raimondii HOM05D012218 ORTHO05D010844 8.1e-34 149.8 808 28.7
Haze_16528 Corylus avellana HOM05D012473 ORTHO05D010844 5.8e-32 143.7 729 33.5
TWI31G0860 Tripterygium wilfordii HOM05D012218 ORTHO05D010844 1.7e-31 142.1 806 27.8
Cfa001988 Carpinus fangiana HOM05D012473 ORTHO05D010844 2.5e-30 138.3 772 30.6
Gohir.D04G032700 Gossypium hirsutum HOM05D012218 ORTHO05D010844 5.5e-30 137.1 804 29.4
QL02p071969 Quercus lobata HOM05D012473 ORTHO05D010844 5.5e-30 137.1 784 31.6
QL10p005044 Quercus lobata HOM05D012473 ORTHO05D010844 1.2e-29 136.0 855 29.2
FAN28G1165 Fragaria x ananassa HOM05D012473 ORTHO05D010844 2.3e-28 131.7 785 33.1
Manes.05G184500 Manihot esculenta HOM05D012218 ORTHO05D010844 8.7e-28 129.8 841 28.1
CiPaw.03G115200 Carya illinoinensis HOM05D012218 ORTHO05D010844 8.2e-26 123.2 977 28.1
FAN23G1528 Fragaria x ananassa HOM05D012473 ORTHO05D010844 5.3e-25 120.6 792 28.7
TAR381G1694 Trochodendron aralioides HOM05D012218 ORTHO05D010844 1.8e-20 105.5 298 35.6
Duzib187G0544 Durio zibethinus HOM05D012218 ORTHO05D010844 3.3e-19 101.3 705 28.5
FAN19G1264 Fragaria x ananassa HOM05D012473 ORTHO05D010844 2.4e-17 95.1 789 29.5
FAN26G1572 Fragaria x ananassa HOM05D012473 ORTHO05D010844 3.4e-16 91.3 783 30.3
CSS0006956 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 5.9e-16 90.5 158 42.4
CSS0018747 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 5.9e-16 90.5 158 42.4
MD15G1138700 Malus domestica HOM05D012473 ORTHO05D010844 7.7e-16 90.1 754 27.2
TPR.G28364 Trifolium pratense HOM05D012459 ORTHO05D010844 1.0e-15 89.7 810 27.0
CSS0038628 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 1.7e-15 89.0 160 41.9
FvH4_1g25520 Fragaria vesca HOM05D012473 ORTHO05D010844 6.5e-15 87.0 788 29.3
vmacro12771 Vaccinium macrocarpon HOM05D017996 ORTHO05D017165 6.5e-15 87.0 202 38.1
CSS0030355 Camellia sinensis var. sinensis HOM05D017996 ORTHO05D017165 1.4e-14 85.9 160 41.2
Dinv07458 Davidia involucrata HOM05D010873 ORTHO05D013124 7.9e-13 80.1 844 25.8
Actinidia06596 Actinidia chinensis HOM05D010873 ORTHO05D013124 3.3e-11 74.7 325 30.2
Solyc05g008490.2 Solanum lycopersicum HOM05D010873 ORTHO05D013124 1.7e-10 72.4 163 33.7
FAN08G2906 Fragaria x ananassa HOM05D012473 ORTHO05D010844 2.2e-10 72.0 181 35.4
FvH4_5g34270 Fragaria vesca HOM05D012473 ORTHO05D010844 2.8e-10 71.6 204 33.3
Psat0s4832g0040 Pisum sativum HOM05D012459 ORTHO05D010844 2.8e-10 71.6 418 27.0
Atru.chr6.1276 Acer truncatum HOM05D017996 ORTHO05D017165 3.7e-10 71.2 200 36.0
Thhalv10029311m.g Eutrema salsugineum HOM05D009813 ORTHO05D011936 8.2e-10 70.1 196 35.2
EL10Ac4g09661 Beta vulgaris HOM05D030946 ORTHO05D010844 1.8e-09 68.9 200 38.5
Cpa.g.sc37.40 Carica papaya HOM05D001512 ORTHO05D001574 1.8e-09 68.9 227 37.9
THA.LOC104800245 Tarenaya hassleriana HOM05D009813 ORTHO05D011936 2.4e-09 68.6 775 26.1
arahy.Tifrunner.gnm1.ann1.UJV3YP Arachis hypogaea HOM05D012459 ORTHO05D010844 3.1e-09 68.2 179 38.0
Sp2g26820 Schrenkiella parvula HOM05D009813 ORTHO05D011936 5.3e-09 67.4 159 42.1
Sc09g0002200 Simmondsia chinensis HOM05D030946 ORTHO05D010844 9.1e-09 66.6 190 37.4
AL8G40940 Arabidopsis lyrata HOM05D009813 ORTHO05D011936 1.2e-08 66.2 180 35.0
BcaNung04641 Brassica carinata HOM05D009813 ORTHO05D011936 1.2e-08 66.2 196 34.7
Ca_25366_v3 Cicer arietinum L. HOM05D012459 ORTHO05D010844 1.5e-08 65.9 847 25.4
arahy.Tifrunner.gnm1.ann1.9KKX2T Arachis hypogaea HOM05D012459 ORTHO05D010844 2.0e-08 65.5 217 34.6
AL8G40880 Arabidopsis lyrata HOM05D009813 ORTHO05D011936 3.4e-08 64.7 180 34.4
Nn3g21159 Nelumbo nucifera HOM05D012218 ORTHO05D019306 5.9e-08 63.9 284 30.6
Glyma.16G211200 Glycine max HOM05D012459 ORTHO05D010844 1.0e-07 63.2 829 25.9
Medtr6g078430 Medicago truncatula HOM05D012459 ORTHO05D010844 1.0e-07 63.2 418 25.8
Glyma.09G162200 Glycine max HOM05D012459 ORTHO05D010844 1.3e-07 62.8 421 28.0
MELO3C005461.2 Cucumis melo HOM05D036858 ORTHO05D010844 1.7e-07 62.4 155 41.9
ClCG01G004750 Citrullus lanatus HOM05D036858 ORTHO05D010844 2.2e-07 62.0 164 38.4
PGR102G2674 Punica granatum HOM05D012473 ORTHO05D010844 3.8e-07 61.2 761 24.3
Glyma.16G211400 Glycine max HOM05D000005 ORTHO05D010844 6.5e-07 60.5 544 26.8
BcaC04g23353 Brassica carinata HOM05D009813 ORTHO05D011936 1.1e-06 59.7 192 36.5
CARHR277640 Cardamine hirsuta HOM05D009813 ORTHO05D011936 1.4e-06 59.3 155 35.5
Phvul.004G137400 Phaseolus vulgaris HOM05D012459 ORTHO05D010844 1.4e-06 59.3 789 26.9
Lj2g0023112 Lotus japonicus HOM05D012459 ORTHO05D010844 1.9e-06 58.9 859 23.2
PGSC0003DMG400030562 Solanum tuberosum HOM05D010873 ORTHO05D013124 1.9e-06 58.9 868 25.6
Oeu028233.1 Olea europaea HOM05D010873 ORTHO05D013124 3.2e-06 58.2 183 35.0
Aa31LG1G18120 Aethionema arabicum HOM05D009813 ORTHO05D011936 5.5e-06 57.4 155 35.5


User provided reference genes

Program Settings