Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G093100 Populus trichocarpa HOM05D004626 ORTHO05D005185 5.6e-68 260.8 127 100.0
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 6.9e-34 147.5 177 53.1
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 6.7e-29 131.0 168 48.2
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.8e-27 125.6 169 47.3
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.8e-27 125.6 169 47.3
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 3.7e-27 125.2 175 46.9
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 8.2e-27 124.0 175 46.9
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 8.2e-27 124.0 171 46.8
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 2.4e-26 122.5 171 46.2
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.4e-26 122.5 179 44.7
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 2.4e-26 122.5 170 45.9
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 3.1e-26 122.1 166 49.4
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 4.0e-26 121.7 172 43.6
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 4.0e-26 121.7 164 46.3
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 9.0e-26 120.6 172 43.0
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 9.0e-26 120.6 164 46.3
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 9.0e-26 120.6 175 43.4
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 1.5e-25 119.8 171 45.0
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 2.0e-25 119.4 174 43.7
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 2.6e-25 119.0 187 43.9
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 2.6e-25 119.0 184 41.3
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.6e-25 119.0 175 44.6
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 3.4e-25 118.6 169 42.0
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 3.4e-25 118.6 185 40.5
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 3.4e-25 118.6 184 43.5
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 3.4e-25 118.6 176 41.5
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.4e-25 118.6 174 42.5
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.4e-25 118.6 174 42.5
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.4e-25 118.6 174 42.5
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 3.4e-25 118.6 167 47.9
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 4.5e-25 118.2 172 43.0
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 7.6e-25 117.5 177 43.5
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 1.3e-24 116.7 163 45.4
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.3e-24 116.7 176 43.8
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 1.3e-24 116.7 168 45.2
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 1.7e-24 116.3 175 44.6
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 2.9e-24 115.5 108 57.4
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 2.9e-24 115.5 184 42.4
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.9e-24 115.5 174 43.7
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.9e-24 115.5 174 43.7
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 3.8e-24 115.2 168 44.0
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 4.9e-24 114.8 176 43.2
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 4.9e-24 114.8 108 58.3
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 4.9e-24 114.8 174 44.3
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 6.5e-24 114.4 169 43.8
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 8.4e-24 114.0 184 43.5
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 8.4e-24 114.0 184 43.5
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 8.4e-24 114.0 169 45.6
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.4e-23 113.2 166 44.6
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.9e-23 112.8 176 43.2
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.5e-23 112.5 183 39.3
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.5e-23 112.5 183 39.3
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 2.5e-23 112.5 165 42.4
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.5e-23 112.5 180 40.0
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.5e-23 112.5 175 43.4
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 4.2e-23 111.7 175 42.3
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 4.2e-23 111.7 108 55.6
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 5.5e-23 111.3 176 42.6
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 7.1e-23 110.9 152 48.0
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 9.3e-23 110.5 204 39.7
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 9.3e-23 110.5 176 41.5
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 9.3e-23 110.5 176 41.5
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 9.3e-23 110.5 176 41.5
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 9.3e-23 110.5 108 55.6
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 2.1e-22 109.4 174 42.5
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 2.1e-22 109.4 175 42.3
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 2.7e-22 109.0 175 41.7
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 2.7e-22 109.0 175 41.7
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 2.7e-22 109.0 108 52.8
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.6e-22 108.2 165 43.6
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 4.6e-22 108.2 165 43.6
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 6.0e-22 107.8 108 55.6
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 7.9e-22 107.5 175 41.1
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 1.0e-21 107.1 174 41.4
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 1.0e-21 107.1 108 55.6
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 1.0e-21 107.1 172 41.3
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 1.3e-21 106.7 162 43.8
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.3e-21 106.7 165 42.4
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.3e-21 106.7 165 42.4
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.8e-21 106.3 158 44.3
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 3.0e-21 105.5 174 40.8
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 3.0e-21 105.5 105 51.4
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 5.1e-21 104.8 174 41.4
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 5.1e-21 104.8 108 54.6
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 6.7e-21 104.4 173 41.6
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 6.7e-21 104.4 108 53.7
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 8.7e-21 104.0 175 40.6
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 8.7e-21 104.0 177 40.1
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 1.5e-20 103.2 108 52.8
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 1.5e-20 103.2 187 37.4
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 2.5e-20 102.4 190 38.4
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 4.3e-20 101.7 108 51.9
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 5.7e-20 101.3 203 38.9
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 5.7e-20 101.3 187 36.9
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 7.4e-20 100.9 170 40.0
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 7.4e-20 100.9 108 50.0
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 7.4e-20 100.9 166 40.4
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 9.7e-20 100.5 181 39.8
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 9.7e-20 100.5 164 38.4
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 9.7e-20 100.5 174 39.7
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 9.7e-20 100.5 174 39.7
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 9.7e-20 100.5 105 52.4
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 9.7e-20 100.5 106 50.0
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 1.3e-19 100.1 172 40.1
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 1.6e-19 99.8 167 39.5
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 2.8e-19 99.0 104 52.9
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 3.7e-19 98.6 114 48.2
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 6.3e-19 97.8 105 49.5
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 6.3e-19 97.8 108 49.1
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 1.8e-18 96.3 110 48.2
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 4.1e-18 95.1 108 47.2
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 1.2e-17 93.6 110 45.5
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 1.2e-17 93.6 109 49.5
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 2.6e-17 92.4 85 55.3
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 3.8e-16 88.6 151 37.7
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 6.5e-16 87.8 91 53.8
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 8.5e-16 87.4 191 34.6
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 1.9e-15 86.3 117 41.0
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 7.2e-15 84.3 195 33.8
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 4.6e-14 81.6 106 40.6
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 5.1e-13 78.2 162 37.7
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 1.5e-12 76.6 106 41.5
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 9.7e-12 73.9 106 37.7
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 6.9e-10 67.8 102 39.2
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 6.9e-10 67.8 155 35.5
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.5e-09 66.6 46 76.1
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 3.4e-09 65.5 101 36.6
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 7.7e-09 64.3 88 40.9
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 7.7e-09 64.3 101 35.6
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 1.0e-08 63.9 99 35.4
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.3e-08 63.5 148 35.8
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 2.9e-08 62.4 46 71.7
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 5.0e-08 61.6 111 36.9
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 4.2e-07 58.5 103 37.9
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 5.5e-07 58.2 100 39.0
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 7.2e-07 57.8 92 34.8
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 7.2e-07 57.8 91 40.7
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 7.2e-07 57.8 110 36.4
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 1.6e-06 56.6 102 37.3
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.6e-06 56.6 78 42.3
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 6.1e-06 54.7 91 37.4


User provided reference genes

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