Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G090500 Populus trichocarpa HOM05D005306 ORTHO05D006158 3.2e-198 694.9 356 100.0
Sabra07G0074200 Salix brachista HOM05D005306 ORTHO05D006158 1.0e-183 646.7 356 93.3
Potri.005G077400 Populus trichocarpa HOM05D005306 ORTHO05D006158 1.3e-149 533.5 359 78.6
Manes.12G136900 Manihot esculenta HOM05D005306 ORTHO05D006158 1.4e-100 370.5 376 59.8
QL06p049976 Quercus lobata HOM05D005306 ORTHO05D006158 1.2e-86 324.3 370 53.5
TWI77G0207 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.7e-82 310.5 366 51.9
TWI53G1353 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 1.1e-81 307.8 359 52.1
QL04p017893 Quercus lobata HOM05D005306 ORTHO05D006158 2.1e-80 303.5 377 53.1
Thecc.01G104400 Theobroma cacao HOM05D005306 ORTHO05D006158 6.1e-80 302.0 359 53.5
Atru.chr4.126 Acer truncatum HOM05D005306 ORTHO05D006158 8.8e-79 298.1 370 50.5
CiPaw.04G097600 Carya illinoinensis HOM05D005306 ORTHO05D006158 8.3e-77 291.6 375 50.4
Cpa.g.sc20.237 Carica papaya HOM05D005306 ORTHO05D006158 1.4e-76 290.8 368 49.2
Cfa002685 Carpinus fangiana HOM05D005306 ORTHO05D006158 1.4e-76 290.8 376 50.5
Ciclev10025982m.g Citrus clementina HOM05D005306 ORTHO05D006158 3.1e-76 289.7 359 49.9
COL.COLO4_09939 Corchorus olitorius HOM05D005306 ORTHO05D006158 8.6e-74 281.6 358 48.9
Haze_24956 Corylus avellana HOM05D005306 ORTHO05D006158 1.9e-73 280.4 391 48.6
CiPaw.03G140300 Carya illinoinensis HOM05D005306 ORTHO05D006158 2.5e-73 280.0 326 52.5
Dinv21926 Davidia involucrata HOM05D005306 ORTHO05D006158 7.3e-73 278.5 374 47.1
Gohir.A11G052900 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.6e-72 277.3 357 49.3
Gorai.007G061500 Gossypium raimondii HOM05D005306 ORTHO05D006158 2.9e-69 266.5 358 48.3
Prupe.6G182000 Prunus persica HOM05D005306 ORTHO05D006158 7.0e-68 261.9 387 46.3
Gohir.D12G096600 Gossypium hirsutum HOM05D005306 ORTHO05D006158 5.0e-66 255.8 360 46.9
Gorai.008G104700 Gossypium raimondii HOM05D005306 ORTHO05D006158 5.0e-66 255.8 360 46.9
Actinidia36600 Actinidia chinensis HOM05D005306 ORTHO05D006158 8.6e-66 255.0 368 44.8
Dinv16302 Davidia involucrata HOM05D005306 ORTHO05D006158 8.6e-66 255.0 361 46.3
Gohir.A12G079125 Gossypium hirsutum HOM05D005306 ORTHO05D006158 3.3e-65 253.1 359 47.1
MD01G1027000 Malus domestica HOM05D005306 ORTHO05D006158 2.8e-64 250.0 386 45.3
Duzib147G0288 Durio zibethinus HOM05D005306 ORTHO05D006158 5.2e-63 245.7 178 69.1
TAR625G0717 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.5e-62 244.2 388 43.3
MD15G1327000 Malus domestica HOM05D005306 ORTHO05D006158 2.0e-62 243.8 389 44.2
CSS0034809 Camellia sinensis var. sinensis HOM05D005306 ORTHO05D006158 1.7e-61 240.7 367 43.6
Eucgr.H04811 Eucalyptus grandis HOM05D005306 ORTHO05D006158 8.3e-61 238.4 389 44.7
RcHm_v2.0_Chr2g0115081 Rosa chinensis HOM05D005306 ORTHO05D006158 5.4e-60 235.7 379 45.4
Lj4A885T20 Lonicera japonica HOM05D005306 ORTHO05D006158 1.3e-58 231.1 361 42.4
Gohir.D11G056300 Gossypium hirsutum HOM05D005306 ORTHO05D006158 1.9e-57 227.3 331 46.8
FAN28G0785 Fragaria x ananassa HOM05D005306 ORTHO05D006158 5.6e-57 225.7 378 43.9
FAN23G1139 Fragaria x ananassa HOM05D005306 ORTHO05D006158 7.3e-57 225.3 379 44.3
TAR381G0610 Trochodendron aralioides HOM05D005306 ORTHO05D006158 1.2e-56 224.6 391 42.7
GSVIVG01004251001 Vitis vinifera HOM05D005306 ORTHO05D006158 1.2e-56 224.6 306 46.1
FvH4_1g21240 Fragaria vesca HOM05D005306 ORTHO05D006158 6.2e-56 222.2 379 44.1
FAN26G1901 Fragaria x ananassa HOM05D005306 ORTHO05D006158 2.3e-55 220.3 379 43.8
ClCG01G018910 Citrullus lanatus HOM05D005306 ORTHO05D006158 1.5e-54 217.6 363 43.3
MELO3C007770.2 Cucumis melo HOM05D005306 ORTHO05D006158 1.9e-52 210.7 357 41.2
THA.LOC104819305 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 1.9e-52 210.7 358 38.3
THA.LOC104818490 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 4.1e-52 209.5 367 40.3
PGR102G1853 Punica granatum HOM05D005306 ORTHO05D006158 5.4e-52 209.1 334 44.3
Sed0001570 Sechium edule HOM05D005306 ORTHO05D006158 1.3e-50 204.5 365 39.7
CsaV3_6G045590 Cucumis sativus L. HOM05D005306 ORTHO05D006158 8.6e-50 201.8 359 39.3
Thhalv10004547m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.5e-49 201.1 367 39.5
Nn5g29063 Nelumbo nucifera HOM05D005306 ORTHO05D006158 5.6e-49 199.1 366 41.8
AUR62002025 Chenopodium quinoa HOM05D005306 ORTHO05D006158 1.2e-46 191.4 380 38.7
Cc07_g15400 Coffea canephora HOM05D005306 ORTHO05D006158 1.5e-46 191.0 359 39.3
AUR62003775 Chenopodium quinoa HOM05D005306 ORTHO05D006158 7.6e-46 188.7 378 39.2
AL8G42620 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 9.9e-46 188.3 366 38.8
AT5G65120 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 1.7e-45 187.6 354 38.4
BraA06t26127Z Brassica rapa HOM05D005306 ORTHO05D006158 2.9e-45 186.8 362 37.3
Sp2g28200 Schrenkiella parvula HOM05D005306 ORTHO05D006158 8.4e-45 185.3 364 39.0
A06p31940 Brassica napus HOM05D005306 ORTHO05D006158 1.4e-44 184.5 364 37.1
Thhalv10014214m.g Eutrema salsugineum HOM05D005306 ORTHO05D006158 1.9e-44 184.1 352 38.1
Sp6g33290 Schrenkiella parvula HOM05D005306 ORTHO05D006158 1.9e-44 184.1 353 37.4
FAN19G0499 Fragaria x ananassa HOM05D005306 ORTHO05D006158 4.1e-44 183.0 355 41.7
TWI74G0266 Tripterygium wilfordii HOM05D005306 ORTHO05D006158 7.1e-44 182.2 274 42.3
Nn1g05302 Nelumbo nucifera HOM05D005306 ORTHO05D006158 9.2e-44 181.8 375 37.1
vmacro12947 Vaccinium macrocarpon HOM05D005306 ORTHO05D006158 9.2e-44 181.8 345 41.2
CANSAT01G2249 Cannabis sativa HOM05D005306 ORTHO05D006158 1.2e-43 181.4 167 56.9
Aa31LG1G16850 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.6e-43 181.0 362 37.0
BcaC01g02741 Brassica carinata HOM05D005306 ORTHO05D006158 2.7e-43 180.3 363 36.4
C03p61010 Brassica napus HOM05D005306 ORTHO05D006158 2.7e-43 180.3 363 36.4
BolC3t18363H Brassica oleracea HOM05D005306 ORTHO05D006158 2.7e-43 180.3 363 36.4
CARHR203180 Cardamine hirsuta HOM05D005306 ORTHO05D006158 2.7e-43 180.3 362 37.6
Hund13638 Selenicereus undatus HOM05D005306 ORTHO05D006158 1.2e-40 171.4 337 37.4
Carub.0008s2596 Capsella rubella HOM05D005306 ORTHO05D006158 1.6e-40 171.0 350 37.4
Carub.0006s0857 Capsella rubella HOM05D005306 ORTHO05D006158 2.4e-39 167.2 350 35.1
PSO210G6319 Papaver somniferum HOM05D005306 ORTHO05D006158 3.1e-39 166.8 162 54.3
DCAR_014236 Daucus carota HOM05D005306 ORTHO05D006158 5.2e-39 166.0 346 39.0
BcaB02g09863 Brassica carinata HOM05D005306 ORTHO05D006158 6.8e-39 165.6 360 36.4
Lalb_Chr07g0185101 Lupinus albus HOM05D005306 ORTHO05D006158 6.8e-39 165.6 350 36.6
arahy.Tifrunner.gnm1.ann1.U0X1YR Arachis hypogaea HOM05D005306 ORTHO05D006158 2.0e-38 164.1 350 36.6
Oeu032161.1 Olea europaea HOM05D005306 ORTHO05D006158 2.0e-38 164.1 201 45.8
Oeu032163.1 Olea europaea HOM05D005306 ORTHO05D006158 2.0e-38 164.1 201 45.8
C03p04880 Brassica napus HOM05D005306 ORTHO05D006158 2.6e-38 163.7 344 36.3
BolC3t13020H Brassica oleracea HOM05D005306 ORTHO05D006158 2.6e-38 163.7 344 36.3
VMungo0251G2777 Vigna mungo HOM05D005306 ORTHO05D006158 5.8e-38 162.5 342 36.3
Ah.02g122180 Amaranthus hybridus HOM05D005306 ORTHO05D006158 9.9e-38 161.8 357 37.0
A03p04410 Brassica napus HOM05D005306 ORTHO05D006158 1.3e-37 161.4 151 55.6
BraA03t09786Z Brassica rapa HOM05D005306 ORTHO05D006158 1.3e-37 161.4 151 55.6
AL6G20570 Arabidopsis lyrata HOM05D005306 ORTHO05D006158 4.9e-37 159.5 351 34.2
Sopen04g024710 Solanum pennellii HOM05D005306 ORTHO05D006158 6.4e-37 159.1 371 34.8
arahy.Tifrunner.gnm1.ann1.H9PZRL Arachis hypogaea HOM05D005306 ORTHO05D006158 3.2e-36 156.8 350 36.0
PGSC0003DMG400020626 Solanum tuberosum HOM05D005306 ORTHO05D006158 4.2e-36 156.4 367 33.8
AT5G10110 Arabidopsis thaliana HOM05D005306 ORTHO05D006158 9.3e-36 155.2 354 34.5
CARHR279030 Cardamine hirsuta HOM05D005306 ORTHO05D006158 9.3e-36 155.2 359 35.9
Lsat_1_v5_gn_4_141700 Lactuca sativa HOM05D005306 ORTHO05D006158 9.3e-36 155.2 339 35.4
Phvul.002G254400 Phaseolus vulgaris HOM05D005306 ORTHO05D006158 2.7e-35 153.7 344 34.6
Solyc04g054900.3 Solanum lycopersicum HOM05D005306 ORTHO05D006158 3.5e-35 153.3 359 33.4
ECA232G0837 Erigeron canadensis HOM05D005306 ORTHO05D006158 1.0e-34 151.8 197 45.7
Lalb_Chr13g0296051 Lupinus albus HOM05D005306 ORTHO05D006158 1.3e-34 151.4 168 50.6
EL10Ac6g15084 Beta vulgaris HOM05D005306 ORTHO05D006158 3.0e-34 150.2 363 35.8
HanXRQChr15g0484181 Helianthus annuus HOM05D005306 ORTHO05D006158 3.9e-34 149.8 376 37.2
BcaB04g20004 Brassica carinata HOM05D005306 ORTHO05D006158 5.1e-34 149.4 359 32.6
Peaxi162Scf00422g00025 Petunia axillaris HOM05D005306 ORTHO05D006158 1.5e-33 147.9 362 34.0
Psat7g054080 Pisum sativum HOM05D005306 ORTHO05D006158 8.1e-32 142.1 356 35.1
MSTRG.2558 Avicennia marina HOM05D005306 ORTHO05D006158 1.1e-31 141.7 166 45.8
BcaC04g23269 Brassica carinata HOM05D005306 ORTHO05D006158 1.1e-31 141.7 361 32.7
Medtr8g090365 Medicago truncatula HOM05D005306 ORTHO05D006158 1.1e-31 141.7 351 33.9
BraA09t36544Z Brassica rapa HOM05D005306 ORTHO05D006158 1.4e-31 141.4 359 32.6
CAN.G113.1 Capsicum annuum HOM05D005306 ORTHO05D006158 4.0e-31 139.8 368 32.1
Lsat_1_v5_gn_5_43440 Lactuca sativa HOM05D005306 ORTHO05D006158 5.3e-31 139.4 345 34.2
C09p10370 Brassica napus HOM05D005306 ORTHO05D006158 1.2e-30 138.3 362 33.4
BolC9t53937H Brassica oleracea HOM05D005306 ORTHO05D006158 1.2e-30 138.3 362 33.4
Aqoxy6G00585 Aquilegia oxysepala HOM05D005306 ORTHO05D006158 4.5e-30 136.3 354 35.0
Lj4g0005197 Lotus japonicus HOM05D005306 ORTHO05D006158 4.5e-30 136.3 345 35.4
SalBow3G4455 Salvia bowleyana HOM05D005306 ORTHO05D006158 5.8e-30 136.0 157 42.7
Migut.H02371 Erythranthe guttata HOM05D005306 ORTHO05D006158 7.6e-30 135.6 158 44.9
Sed0017418 Sechium edule HOM05D005306 ORTHO05D006158 1.3e-29 134.8 152 52.0
TPR.G2173 Trifolium pratense HOM05D005306 ORTHO05D006158 1.3e-29 134.8 349 33.2
THA.LOC104801720 Tarenaya hassleriana HOM05D005306 ORTHO05D006158 8.4e-29 132.1 297 37.4
Nitab4.5_0000104g0330 Nicotiana tabacum HOM05D005306 ORTHO05D006158 1.9e-28 131.0 343 34.1
Nitab4.5_0004120g0030 Nicotiana tabacum HOM05D005306 ORTHO05D006158 2.4e-28 130.6 332 32.8
Ca_17725_v3 Cicer arietinum L. HOM05D005306 ORTHO05D006158 4.2e-28 129.8 350 33.7
SGA_v2.0_scaffold47G17761 Striga asiatica HOM05D005306 ORTHO05D006158 1.0e-26 125.2 387 32.0
MSTRG.23333 Avicennia marina HOM05D005306 ORTHO05D006158 2.5e-25 120.6 277 33.9
MBI05_g34472_MAGBIO Magnolia biondii HOM05D005306 ORTHO05D006158 5.6e-25 119.4 415 32.5
Glyma.08G137700 Glycine max HOM05D005306 ORTHO05D006158 1.1e-23 115.2 347 30.3
A09p08930 Brassica napus HOM05D005306 ORTHO05D006158 3.8e-21 106.7 334 29.9
Os02g0752300 Oryza sativa ssp. japonica HOM05D005306 ORTHO05D006158 4.2e-20 103.2 113 46.9
Aa31LG3G17030 Aethionema arabicum HOM05D005306 ORTHO05D006158 1.6e-19 101.3 154 35.1
PSO447G0179 Papaver somniferum HOM05D005306 ORTHO05D006158 4.6e-19 99.8 162 38.3
Zm00001eb194230 Zea mays HOM05D005306 ORTHO05D006158 2.3e-18 97.4 112 43.8
BcaB02g09865 Brassica carinata HOM05D005306 ORTHO05D006158 4.8e-16 89.7 88 51.1
Glyma.05G180000 Glycine max HOM05D005306 ORTHO05D006158 5.3e-15 86.3 348 28.2
Sc16g0005560 Simmondsia chinensis HOM05D005306 ORTHO05D006158 7.6e-14 82.4 275 29.8
Lj2C552G1 Lonicera japonica HOM05D005306 ORTHO05D006158 3.8e-13 80.1 211 35.5
CDE10G0726 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 4.9e-13 79.7 159 35.8
Ah.03g142470 Amaranthus hybridus HOM05D005306 ORTHO05D006158 6.5e-13 79.3 266 31.6
Hund16271 Selenicereus undatus HOM05D005306 ORTHO05D006158 3.2e-12 77.0 361 28.3
HPP92_004303 Vanilla planifolia HOM05D005306 ORTHO05D006158 1.8e-10 71.2 94 40.4
ATR0564G355 Amborella trichopoda HOM05D005306 ORTHO05D006158 3.9e-10 70.1 127 37.8
SEGI_16914 Sequoiadendron giganteum HOM05D003400 ORTHO05D003687 3.9e-10 70.1 141 32.6
unitig_27.g25362 Utricularia gibba HOM05D033148 ORTHO05D006158 3.9e-10 70.1 103 35.9
CDE10G0861 Ceratophyllum demersum HOM05D005306 ORTHO05D006158 8.2e-08 62.4 101 36.6
C03p45450 Brassica napus HOM05D005306 ORTHO05D006158 3.4e-06 57.0 118 33.9
THA.LOC104816509 Tarenaya hassleriana HOM05D003400 ORTHO05D003687 3.4e-06 57.0 159 27.7
ClCG07G005110 Citrullus lanatus HOM05D003400 ORTHO05D003687 7.6e-06 55.8 161 28.0


User provided reference genes

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