Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G087100 Populus trichocarpa HOM05D004921 ORTHO05D006008 0.0e+00 1142.9 647 100.0
Potri.005G080200 Populus trichocarpa HOM05D004921 ORTHO05D006008 5.1e-258 894.4 662 78.7
Sabra05G0065800 Salix brachista HOM05D004921 ORTHO05D006008 9.0e-239 830.5 723 70.0
Manes.12G138700 Manihot esculenta HOM05D004921 ORTHO05D006008 4.0e-186 655.6 676 63.2
Atru.chr4.263 Acer truncatum HOM05D004921 ORTHO05D006008 1.5e-156 557.4 675 52.9
Duzib147G0642 Durio zibethinus HOM05D004921 ORTHO05D006008 1.5e-156 557.4 672 53.4
Gohir.D11G225200 Gossypium hirsutum HOM05D004921 ORTHO05D006008 1.4e-154 550.8 689 51.1
Gohir.A11G198900 Gossypium hirsutum HOM05D004921 ORTHO05D006008 5.2e-154 548.9 677 51.0
Gorai.007G242500 Gossypium raimondii HOM05D004921 ORTHO05D006008 5.2e-154 548.9 689 50.9
Thecc.01G107800 Theobroma cacao HOM05D004921 ORTHO05D006008 2.0e-153 547.0 674 52.4
COL.COLO4_11048 Corchorus olitorius HOM05D004921 ORTHO05D006008 2.6e-153 546.6 678 51.6
Gorai.008G103200 Gossypium raimondii HOM05D004921 ORTHO05D006008 5.4e-151 538.9 679 51.7
TWI53G0980 Tripterygium wilfordii HOM05D004921 ORTHO05D006008 7.1e-151 538.5 679 53.9
Gohir.D12G094600 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.2e-151 538.1 679 51.7
TAR381G0204 Trochodendron aralioides HOM05D004921 ORTHO05D006008 1.6e-147 527.3 689 49.3
Eucgr.I00377 Eucalyptus grandis HOM05D004921 ORTHO05D006008 4.7e-147 525.8 652 51.5
TAR381G1578 Trochodendron aralioides HOM05D004921 ORTHO05D006008 6.2e-147 525.4 670 51.8
Duzib187G0704 Durio zibethinus HOM05D004921 ORTHO05D006008 1.7e-144 517.3 713 51.3
Ciclev10025222m.g Citrus clementina HOM05D004921 ORTHO05D006008 1.9e-143 513.8 647 51.3
RcHm_v2.0_Chr2g0115541 Rosa chinensis HOM05D004921 ORTHO05D006008 4.2e-143 512.7 675 51.6
Prupe.6G178900 Prunus persica HOM05D004921 ORTHO05D006008 1.2e-142 511.1 667 49.0
THA.LOC104807708 Tarenaya hassleriana HOM05D004921 ORTHO05D006008 8.7e-141 505.0 674 49.6
PGR004G1500 Punica granatum HOM05D004921 ORTHO05D006008 1.3e-139 501.1 655 48.9
MD01G1023900 Malus domestica HOM05D004921 ORTHO05D006008 1.5e-137 494.2 664 48.2
Thhalv10024641m.g Eutrema salsugineum HOM05D004921 ORTHO05D006008 1.1e-135 488.0 672 47.0
CARHR247030 Cardamine hirsuta HOM05D004921 ORTHO05D006008 1.4e-135 487.6 663 47.1
CiPaw.03G138100 Carya illinoinensis HOM05D004921 ORTHO05D006008 3.2e-135 486.5 461 60.1
Nn5g28998 Nelumbo nucifera HOM05D004921 ORTHO05D006008 1.6e-134 484.2 684 46.8
Sp7g36200 Schrenkiella parvula HOM05D004921 ORTHO05D006008 4.6e-134 482.6 680 46.5
MSTRG.2547 Avicennia marina HOM05D004921 ORTHO05D006008 1.3e-133 481.1 660 47.6
EL10Ac6g15063 Beta vulgaris HOM05D004921 ORTHO05D006008 5.1e-133 479.2 660 48.9
Migut.H02393 Erythranthe guttata HOM05D004921 ORTHO05D006008 6.6e-133 478.8 652 50.2
Sed0006076 Sechium edule HOM05D004921 ORTHO05D006008 2.5e-132 476.9 683 48.2
Actinidia36610 Actinidia chinensis HOM05D004921 ORTHO05D006008 1.3e-131 474.6 668 46.4
Rhsim10G0156300 Rhododendron simsii HOM05D004921 ORTHO05D006008 1.3e-131 474.6 692 46.4
AT4G39690 Arabidopsis thaliana HOM05D004921 ORTHO05D006008 6.2e-131 472.2 672 46.0
MELO3C007782.2 Cucumis melo HOM05D004921 ORTHO05D006008 1.8e-130 470.7 680 45.9
MSTRG.23325 Avicennia marina HOM05D004921 ORTHO05D006008 5.3e-130 469.2 397 63.0
Gohir.A12G091122 Gossypium hirsutum HOM05D004921 ORTHO05D006008 9.0e-130 468.4 705 46.5
HanXRQChr02g0041141 Helianthus annuus HOM05D004921 ORTHO05D006008 1.2e-129 468.0 657 46.4
Carub.0007s0157 Capsella rubella HOM05D004921 ORTHO05D006008 7.6e-129 465.3 677 45.2
BcaB03g12266 Brassica carinata HOM05D004921 ORTHO05D006008 9.9e-129 464.9 683 45.5
SGA_v2.0_scaffold51G18730 Striga asiatica HOM05D004921 ORTHO05D006008 4.9e-128 462.6 637 47.1
Sopen04g024290 Solanum pennellii HOM05D004921 ORTHO05D006008 1.9e-127 460.7 661 46.7
CsaV3_6G045720 Cucumis sativus L. HOM05D004921 ORTHO05D006008 2.4e-127 460.3 698 44.6
CANSAT01G2911 Cannabis sativa HOM05D004921 ORTHO05D006008 3.2e-127 459.9 672 46.9
QL06p050536 Quercus lobata HOM05D004921 ORTHO05D006008 1.6e-126 457.6 681 45.1
BcaC01g00311 Brassica carinata HOM05D004921 ORTHO05D006008 2.1e-126 457.2 682 44.7
GSVIVG01022188001 Vitis vinifera HOM05D004921 ORTHO05D006008 2.7e-126 456.8 683 43.9
Aqoxy6G00539 Aquilegia oxysepala HOM05D004921 ORTHO05D006008 6.0e-126 455.7 435 60.2
Dinv21950 Davidia involucrata HOM05D004921 ORTHO05D006008 6.0e-126 455.7 336 71.7
C03p78130 Brassica napus HOM05D004921 ORTHO05D006008 1.0e-125 454.9 479 55.1
BolC3t20076H Brassica oleracea HOM05D004921 ORTHO05D006008 1.0e-125 454.9 684 44.6
Sabra07G0072000 Salix brachista HOM05D004921 ORTHO05D006008 1.0e-125 454.9 607 51.1
BraA08t34298Z Brassica rapa HOM05D004921 ORTHO05D006008 2.8e-123 446.8 481 54.7
TPR.G2186 Trifolium pratense HOM05D004921 ORTHO05D006008 6.2e-123 445.7 671 45.0
Nitab4.5_0001095g0090 Nicotiana tabacum HOM05D004921 ORTHO05D006008 1.4e-122 444.5 675 44.7
Sc03g0002320 Simmondsia chinensis HOM05D004921 ORTHO05D006008 1.4e-122 444.5 679 44.0
AL7G11890 Arabidopsis lyrata HOM05D004921 ORTHO05D006008 2.4e-122 443.7 685 44.7
Hma1.2p1_0070F.1_g037680 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 8.4e-120 435.3 342 68.1
PSO133G0077 Papaver somniferum HOM05D004921 ORTHO05D006008 1.1e-119 434.9 671 45.0
PSO541G2636 Papaver somniferum HOM05D004921 ORTHO05D006008 1.1e-119 434.9 671 45.2
A08p23440 Brassica napus HOM05D004921 ORTHO05D006008 9.3e-119 431.8 694 43.1
AUR62003756 Chenopodium quinoa HOM05D004921 ORTHO05D006008 1.2e-118 431.4 638 43.9
AUR62002041 Chenopodium quinoa HOM05D004921 ORTHO05D006008 3.5e-118 429.9 423 55.8
Lalb_Chr13g0296081 Lupinus albus HOM05D004921 ORTHO05D006008 3.0e-117 426.8 669 42.8
ClCG01G019030 Citrullus lanatus HOM05D004921 ORTHO05D006008 8.2e-115 418.7 658 42.6
Glyma.05G181700 Glycine max HOM05D004921 ORTHO05D006008 2.4e-114 417.2 674 42.3
Lalb_Chr07g0184941 Lupinus albus HOM05D004921 ORTHO05D006008 5.3e-114 416.0 669 42.0
Lsat_1_v5_gn_5_40701 Lactuca sativa HOM05D004921 ORTHO05D006008 6.9e-114 415.6 439 54.4
ECA246G4277 Erigeron canadensis HOM05D004921 ORTHO05D006008 3.4e-113 413.3 651 43.2
Lj4g0017071 Lotus japonicus HOM05D004921 ORTHO05D006008 3.4e-113 413.3 731 40.5
Aa31LG6G15580 Aethionema arabicum HOM05D004921 ORTHO05D006008 4.5e-113 412.9 677 44.2
Hund13647 Selenicereus undatus HOM05D004921 ORTHO05D006008 2.2e-112 410.6 678 41.6
arahy.Tifrunner.gnm1.ann1.WRB6NJ Arachis hypogaea HOM05D004921 ORTHO05D006008 6.5e-112 409.1 680 41.6
Psat7g053360 Pisum sativum HOM05D004921 ORTHO05D006008 1.1e-111 408.3 677 42.4
Lj4A880G51 Lonicera japonica HOM05D004921 ORTHO05D006008 1.9e-111 407.5 667 43.8
Medtr8g091480 Medicago truncatula HOM05D004921 ORTHO05D006008 1.6e-110 404.4 663 41.3
ATR0661G561 Amborella trichopoda HOM05D004921 ORTHO05D006008 1.0e-109 401.7 436 53.9
Haze_24997 Corylus avellana HOM05D004921 ORTHO05D006008 3.0e-109 400.2 709 40.8
Ah.03g142660 Amaranthus hybridus HOM05D004921 ORTHO05D006008 2.5e-108 397.1 612 43.1
VMungo0251G2130 Vigna mungo HOM05D004921 ORTHO05D006008 1.6e-107 394.4 664 41.9
MD15G1329400 Malus domestica HOM05D004921 ORTHO05D006008 3.7e-107 393.3 398 57.5
Glyma.08G139400 Glycine max HOM05D004921 ORTHO05D006008 1.8e-106 391.0 666 41.0
Phvul.002G262700 Phaseolus vulgaris HOM05D004921 ORTHO05D006008 5.9e-105 386.0 679 41.1
FAN19G2080 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.3e-104 384.8 675 42.2
FvH4_1g21670 Fragaria vesca HOM05D004921 ORTHO05D006008 3.8e-104 383.3 665 42.4
FAN26G3387 Fragaria x ananassa HOM05D004921 ORTHO05D006008 1.2e-102 378.3 457 51.6
CDE04G0927 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.1e-102 377.5 468 51.1
arahy.Tifrunner.gnm1.ann1.P05418 Arachis hypogaea HOM05D004921 ORTHO05D006008 2.7e-102 377.1 706 39.4
vmacro12934 Vaccinium macrocarpon HOM05D004921 ORTHO05D006008 2.7e-102 377.1 625 41.4
FAN28G0310 Fragaria x ananassa HOM05D004921 ORTHO05D006008 7.9e-102 375.6 676 42.3
Peaxi162Scf00204g00620 Petunia axillaris HOM05D004921 ORTHO05D006008 3.0e-101 373.6 670 40.4
FAN26G3332 Fragaria x ananassa HOM05D004921 ORTHO05D006008 8.8e-101 372.1 670 41.3
FAN23G2445 Fragaria x ananassa HOM05D004921 ORTHO05D006008 2.8e-99 367.1 691 40.8
HPP92_016473 Vanilla planifolia HOM05D004921 ORTHO05D006008 6.9e-98 362.5 344 59.0
HPP92_027138 Vanilla planifolia HOM05D004921 ORTHO05D006008 1.5e-97 361.3 344 59.0
Zm00001eb431730 Zea mays HOM05D004921 ORTHO05D006008 8.8e-93 345.5 648 41.0
CDE06G0766 Ceratophyllum demersum HOM05D004921 ORTHO05D006008 2.6e-92 344.0 466 46.1
MBI05_g00773_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 2.6e-92 344.0 670 39.1
Cc07_g15680 Coffea canephora HOM05D004921 ORTHO05D006008 2.6e-89 334.0 520 44.0
SEGI_07937 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 6.1e-86 322.8 374 50.3
DCAR_001020 Daucus carota HOM05D004921 ORTHO05D006008 7.0e-82 309.3 650 36.3
unitig_0.g2479 Utricularia gibba HOM05D004921 ORTHO05D006008 3.5e-81 307.0 667 36.4
A01p00580 Brassica napus HOM05D004921 ORTHO05D006008 6.6e-56 223.0 270 50.7
AagrBONN_evm.TU.Sc2ySwM_344.1023 Anthoceros agrestis HOM05D004921 ORTHO05D006008 8.6e-56 222.6 435 36.3
MBI05_g36740_MAGBIO Magnolia biondii HOM05D004921 ORTHO05D006008 8.0e-54 216.1 217 56.2
SEGI_00052 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 1.7e-51 208.4 266 48.5
Mapoly0001s0396 Marchantia polymorpha HOM05D004921 ORTHO05D006008 1.3e-48 198.7 321 39.6
Pp3c3_27510 Physcomitrium patens HOM05D004921 ORTHO05D006008 1.1e-47 195.7 369 38.2
SMO174G0199 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 1.1e-47 195.7 326 35.6
Dinv16320 Davidia involucrata HOM05D004921 ORTHO05D006008 1.5e-44 185.3 125 72.0
CBR_g51480 Chara braunii HOM05D004921 ORTHO05D006008 2.0e-44 184.9 330 37.3
BcaNung05547 Brassica carinata HOM05D004921 ORTHO05D006008 7.1e-42 176.4 159 59.7
Nitab4.5_0000518g0040 Nicotiana tabacum HOM05D004921 ORTHO05D006008 2.1e-41 174.9 448 34.4
BraA01t00066Z Brassica rapa HOM05D004921 ORTHO05D006008 7.8e-41 172.9 192 52.1
Cc07_g15670 Coffea canephora HOM05D004921 ORTHO05D006008 2.8e-38 164.5 117 66.7
Nitab4.5_0000518g0050 Nicotiana tabacum HOM05D004921 ORTHO05D006008 6.2e-38 163.3 111 69.4
CAN.G727.1 Capsicum annuum HOM05D004921 ORTHO05D006008 1.4e-37 162.2 117 65.8
Cpa.g.sc82.58 Carica papaya HOM05D004921 ORTHO05D006008 5.8e-36 156.8 112 67.9
Hma1.2p1_0070F.1_g037670 Hydrangea macrophylla HOM05D004921 ORTHO05D006008 9.9e-36 156.0 448 35.0
BolC1t00074H Brassica oleracea HOM05D004921 ORTHO05D006008 2.2e-35 154.8 111 71.2
C01p00710 Brassica napus HOM05D004921 ORTHO05D006008 5.4e-34 150.2 112 70.5
Zm00001eb069160 Zea mays HOM05D004921 ORTHO05D006008 1.2e-30 139.0 457 33.9
Cpa.g.sc82.56 Carica papaya HOM05D004921 ORTHO05D006008 1.7e-27 128.6 89 69.7
Nn5g31279 Nelumbo nucifera HOM05D004921 ORTHO05D006008 6.4e-27 126.7 92 69.6
Dinv04895 Davidia involucrata HOM05D004921 ORTHO05D006008 2.4e-26 124.8 141 53.9
BcaNung00891 Brassica carinata HOM05D004921 ORTHO05D006008 4.6e-25 120.6 90 66.7
SEGI_21175 Sequoiadendron giganteum HOM05D004921 ORTHO05D006008 7.8e-25 119.8 109 54.1
Dinv32118 Davidia involucrata HOM05D004921 ORTHO05D006008 3.0e-24 117.9 141 51.8
Dinv40591 Davidia involucrata HOM05D004921 ORTHO05D006008 6.6e-24 116.7 140 52.1
SMO197G0017 Selaginella moellendorffii HOM05D004921 ORTHO05D006008 7.3e-23 113.2 216 33.3
Cpa.g.sc82.54 Carica papaya HOM05D004921 ORTHO05D006008 6.2e-22 110.2 101 62.4
MCO12G391 Micromonas commoda HOM05D004921 ORTHO05D006008 9.0e-21 106.3 387 29.2
CSS0005403 Camellia sinensis var. sinensis HOM05D004921 ORTHO05D006008 5.1e-16 90.5 335 26.3
COL.COLO4_35617 Corchorus olitorius HOM05D004921 ORTHO05D006008 5.8e-12 77.0 54 75.9
Os04g0636600 Oryza sativa ssp. japonica HOM05D004921 ORTHO05D006008 3.0e-08 64.7 413 27.1
Dinv21952 Davidia involucrata HOM05D004921 ORTHO05D006008 1.9e-07 62.0 149 34.2
BraA01t00065Z Brassica rapa HOM05D004921 ORTHO05D006008 2.1e-06 58.5 60 56.7
Actinidia16048 Actinidia chinensis HOM05D004921 ORTHO05D006008 3.7e-06 57.8 52 50.0


User provided reference genes

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