Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G086750 Populus trichocarpa HOM05D001562 ORTHO05D001437 8.1e-32 139.8 72 100.0
Potri.007G086700 Populus trichocarpa HOM05D001562 ORTHO05D001437 1.3e-13 79.3 62 72.6
Sabra07G0071700 Salix brachista HOM05D001562 ORTHO05D001437 2.2e-13 78.6 66 66.7
Manes.12G139200 Manihot esculenta HOM05D001562 ORTHO05D001437 2.1e-11 72.0 62 66.1
Potri.005G080800 Populus trichocarpa HOM05D001562 ORTHO05D001437 2.1e-11 72.0 62 67.7
Sed0017119 Sechium edule HOM05D001562 ORTHO05D001437 2.7e-11 71.6 62 62.9
ClCG07G009400 Citrullus lanatus HOM05D001562 ORTHO05D001437 7.9e-11 70.1 62 61.3
MELO3C017576.2 Cucumis melo HOM05D001562 ORTHO05D001437 7.9e-11 70.1 62 61.3
CsaV3_4G004850 Cucumis sativus L. HOM05D001562 ORTHO05D001437 7.9e-11 70.1 62 61.3
CsaV3_UNG186460 Cucumis sativus L. HOM05D001562 ORTHO05D001437 7.9e-11 70.1 62 61.3
Dinv21958 Davidia involucrata HOM05D001562 ORTHO05D001437 6.7e-10 67.0 62 59.7
Sabra05G0066100 Salix brachista HOM05D001562 ORTHO05D001437 6.7e-10 67.0 62 69.4
QL06p050588 Quercus lobata HOM05D001562 ORTHO05D001437 1.1e-09 66.2 62 59.7
Sabra05G0066000 Salix brachista HOM05D001075 ORTHO05D003859 1.1e-09 66.2 61 62.3
Dinv03876 Davidia involucrata HOM05D001562 ORTHO05D001437 2.5e-09 65.1 62 59.7
CSS0032066 Camellia sinensis var. sinensis HOM05D001075 ORTHO05D003859 3.3e-09 64.7 62 58.1
TAR376G0632 Trochodendron aralioides HOM05D001562 ORTHO05D001437 4.3e-09 64.3 62 56.5
Oeu002186.2 Olea europaea HOM05D001562 ORTHO05D001437 5.7e-09 63.9 62 61.3
Lalb_Chr08g0231241 Lupinus albus HOM05D001562 ORTHO05D001437 7.4e-09 63.5 64 51.6
Potri.005G080600 Populus trichocarpa HOM05D001562 ORTHO05D001437 7.4e-09 63.5 61 60.7
Rhsim08G0008400 Rhododendron simsii HOM05D001562 ORTHO05D001437 7.4e-09 63.5 62 56.5
Cpa.g.sc2038.1 Carica papaya HOM05D001562 ORTHO05D001437 9.7e-09 63.2 62 59.7
Nitab4.5_0006636g0010 Nicotiana tabacum HOM05D001562 ORTHO05D001437 9.7e-09 63.2 62 54.8
Cfa020604 Carpinus fangiana HOM05D001562 ORTHO05D001437 1.3e-08 62.8 62 59.7
Prupe.6G178300 Prunus persica HOM05D001562 ORTHO05D001437 1.3e-08 62.8 63 58.7
vmacro18620 Vaccinium macrocarpon HOM05D001562 ORTHO05D001437 1.3e-08 62.8 62 56.5
GSVIVG01022192001 Vitis vinifera HOM05D001562 ORTHO05D001437 1.7e-08 62.4 62 56.5
Atru.chr4.289 Acer truncatum HOM05D001562 ORTHO05D001437 2.2e-08 62.0 63 58.7
Glyma.11G237400 Glycine max HOM05D001562 ORTHO05D001437 2.2e-08 62.0 63 52.4
Lj2A557T54 Lonicera japonica HOM05D001562 ORTHO05D001437 2.2e-08 62.0 59 59.3
PGSC0003DMG400012789 Solanum tuberosum HOM05D001562 ORTHO05D001437 2.2e-08 62.0 62 53.2
CANSAT01G2571 Cannabis sativa HOM05D001562 ORTHO05D001437 2.8e-08 61.6 63 60.3
HanXRQChr05g0152251 Helianthus annuus HOM05D001562 ORTHO05D001437 2.8e-08 61.6 62 54.8
RcHm_v2.0_Chr2g0115631 Rosa chinensis HOM05D001562 ORTHO05D001437 2.8e-08 61.6 63 58.7
Lalb_Chr13g0296091 Lupinus albus HOM05D001562 ORTHO05D001437 3.7e-08 61.2 62 53.2
CiPaw.03G137700 Carya illinoinensis HOM05D001562 ORTHO05D001437 4.8e-08 60.8 62 58.1
MD15G1330000 Malus domestica HOM05D001562 ORTHO05D001437 4.8e-08 60.8 62 58.1
Solyc04g054410.3 Solanum lycopersicum HOM05D001562 ORTHO05D001437 4.8e-08 60.8 62 54.8
FvH4_1g21760 Fragaria vesca HOM05D001562 ORTHO05D001437 6.3e-08 60.5 63 58.7
FAN19G0579 Fragaria x ananassa HOM05D001562 ORTHO05D001437 6.3e-08 60.5 63 58.7
FAN28G2169 Fragaria x ananassa HOM05D001562 ORTHO05D001437 6.3e-08 60.5 63 58.7
Glyma.18G019800 Glycine max HOM05D001562 ORTHO05D001437 6.3e-08 60.5 63 50.8
MD01G1022500 Malus domestica HOM05D001562 ORTHO05D001437 6.3e-08 60.5 63 58.7
Sopen04g024240 Solanum pennellii HOM05D001562 ORTHO05D001437 6.3e-08 60.5 62 54.8
CAN.G1068.3 Capsicum annuum HOM05D001562 ORTHO05D001437 8.2e-08 60.1 63 49.2
Sc07g0000590 Simmondsia chinensis HOM05D001562 ORTHO05D001437 8.2e-08 60.1 62 53.2
CARHR279100 Cardamine hirsuta HOM05D001562 ORTHO05D001437 1.1e-07 59.7 62 53.2
Cc00_g21710 Coffea canephora HOM05D001562 ORTHO05D001437 1.1e-07 59.7 62 51.6
Lj6g0001376 Lotus japonicus HOM05D001562 ORTHO05D001437 1.1e-07 59.7 62 53.2
SHI11632 Sapria himalayana HOM05D001562 ORTHO05D001437 1.1e-07 59.7 40 72.5
FAN23G3062 Fragaria x ananassa HOM05D001562 ORTHO05D001437 1.4e-07 59.3 62 56.5
PGR004G1859 Punica granatum HOM05D001562 ORTHO05D001437 1.4e-07 59.3 62 51.6
TAR381G0457 Trochodendron aralioides HOM05D001562 ORTHO05D001437 1.4e-07 59.3 62 51.6
ECA246G3004 Erigeron canadensis HOM05D001562 ORTHO05D001437 1.8e-07 58.9 61 52.5
arahy.Tifrunner.gnm1.ann1.CPIQ3I Arachis hypogaea HOM05D001075 ORTHO05D003859 2.4e-07 58.5 40 70.0
Ciclev10027075m.g Citrus clementina HOM05D001562 ORTHO05D001437 2.4e-07 58.5 63 57.1
SGA_v2.0_scaffold47G17743 Striga asiatica HOM05D001562 ORTHO05D001437 2.4e-07 58.5 62 51.6
Actinidia28880 Actinidia chinensis HOM05D001562 ORTHO05D001437 4.1e-07 57.8 66 51.5
Aqoxy6G00533 Aquilegia oxysepala HOM05D001562 ORTHO05D001437 4.1e-07 57.8 62 53.2
AT5G65180 Arabidopsis thaliana HOM05D001562 ORTHO05D001437 4.1e-07 57.8 62 53.2
MSTRG.3799 Avicennia marina HOM05D001562 ORTHO05D001437 4.1e-07 57.8 62 53.2
EL10Ac6g15061 Beta vulgaris HOM05D001562 ORTHO05D001437 5.3e-07 57.4 62 48.4
COL.COLO4_03579 Corchorus olitorius HOM05D001562 ORTHO05D001437 5.3e-07 57.4 64 54.7
Glyma.05G181900 Glycine max HOM05D001562 ORTHO05D001437 5.3e-07 57.4 61 54.1
Gohir.A11G198800 Gossypium hirsutum HOM05D001562 ORTHO05D001437 5.3e-07 57.4 64 54.7
Gorai.N023300 Gossypium raimondii HOM05D001562 ORTHO05D001437 5.3e-07 57.4 64 54.7
Peaxi162Scf00204g00622 Petunia axillaris HOM05D001562 ORTHO05D001437 5.3e-07 57.4 63 54.0
Thecc.01G108700 Theobroma cacao HOM05D001562 ORTHO05D001437 5.3e-07 57.4 64 54.7
Carub.0006s0852 Capsella rubella HOM05D001562 ORTHO05D001437 6.9e-07 57.0 62 53.2
TWI77G0791 Tripterygium wilfordii HOM05D001562 ORTHO05D001437 6.9e-07 57.0 64 56.2
DCAR_014250 Daucus carota HOM05D001562 ORTHO05D001437 9.1e-07 56.6 62 51.6
Eucgr.I00353 Eucalyptus grandis HOM05D001562 ORTHO05D001437 9.1e-07 56.6 62 51.6
FAN26G3173 Fragaria x ananassa HOM05D001562 ORTHO05D001437 9.1e-07 56.6 63 57.1
Glyma.08G139600 Glycine max HOM05D001562 ORTHO05D001437 9.1e-07 56.6 59 54.2
Rhsim10G0156000 Rhododendron simsii HOM05D001562 ORTHO05D001437 9.1e-07 56.6 59 52.5
SHI33084 Sapria himalayana HOM05D001562 ORTHO05D001437 9.1e-07 56.6 62 54.8
THA.LOC104818483 Tarenaya hassleriana HOM05D001562 ORTHO05D001437 9.1e-07 56.6 62 50.0
TWI74G0250 Tripterygium wilfordii HOM05D001562 ORTHO05D001437 1.2e-06 56.2 64 54.7
AL8G42710 Arabidopsis lyrata HOM05D001562 ORTHO05D001437 1.5e-06 55.8 62 51.6
Carub.0008s2603 Capsella rubella HOM05D001562 ORTHO05D001437 1.5e-06 55.8 62 50.0
Migut.L00094 Erythranthe guttata HOM05D001562 ORTHO05D001437 1.5e-06 55.8 40 67.5
HPP92_002336 Vanilla planifolia HOM05D001562 ORTHO05D001437 2.0e-06 55.5 66 47.0
Actinidia20419 Actinidia chinensis HOM05D001075 ORTHO05D003859 2.6e-06 55.1 40 72.5
AL6G20510 Arabidopsis lyrata HOM05D001562 ORTHO05D001437 2.6e-06 55.1 62 51.6
Ca_16550_v3 Cicer arietinum L. HOM05D001562 ORTHO05D001437 2.6e-06 55.1 64 51.6
Thhalv10013419m.g Eutrema salsugineum HOM05D001562 ORTHO05D001437 2.6e-06 55.1 66 48.5
Lsat_1_v5_gn_5_40720 Lactuca sativa HOM05D001562 ORTHO05D001437 2.6e-06 55.1 62 48.4
Hund13650 Selenicereus undatus HOM05D001562 ORTHO05D001437 3.4e-06 54.7 63 54.0
ATR0564G153 Amborella trichopoda HOM05D001562 ORTHO05D001437 4.5e-06 54.3 62 46.8
Oeu045765.1 Olea europaea HOM05D001562 ORTHO05D001437 4.5e-06 54.3 61 50.8
SalBow5G0643 Salvia bowleyana HOM05D001562 ORTHO05D001437 4.5e-06 54.3 62 46.8
SalBow5G2619 Salvia bowleyana HOM05D001562 ORTHO05D001437 4.5e-06 54.3 62 46.8
Eucgr.I00350 Eucalyptus grandis HOM05D001562 ORTHO05D001437 7.7e-06 53.5 62 48.4
Gohir.D11G225400 Gossypium hirsutum HOM05D001562 ORTHO05D001437 7.7e-06 53.5 64 53.1


User provided reference genes

Program Settings