Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G086000 Populus trichocarpa HOM05D007801 ORTHO05D009763 5.0e-35 150.6 78 100.0
Potri.005G081400 Populus trichocarpa HOM05D007801 ORTHO05D009763 9.4e-26 119.8 78 79.5
Sabra05G0066600 Salix brachista HOM05D007801 ORTHO05D009763 1.4e-24 115.9 78 76.9
Sabra07G0071200 Salix brachista HOM05D007801 ORTHO05D009763 2.0e-20 102.1 66 80.3
Prupe.6G177500 Prunus persica HOM05D007801 ORTHO05D009763 4.5e-20 100.9 80 65.0
QL06p033111 Quercus lobata HOM05D007801 ORTHO05D009763 1.0e-19 99.8 77 66.2
CiPaw.03G137300 Carya illinoinensis HOM05D007801 ORTHO05D009763 2.9e-19 98.2 79 69.6
COL.COLO4_11043 Corchorus olitorius HOM05D007801 ORTHO05D009763 6.6e-19 97.1 78 65.4
Thecc.01G109200 Theobroma cacao HOM05D007801 ORTHO05D009763 6.1e-17 90.5 78 59.0
Duzib264G0602 Durio zibethinus HOM05D007801 ORTHO05D009763 1.8e-16 89.0 78 60.3
Glyma.08G139800 Glycine max HOM05D007801 ORTHO05D009763 8.9e-16 86.7 78 60.3
Haze_25007 Corylus avellana HOM05D007801 ORTHO05D009763 1.2e-15 86.3 83 60.2
Rhsim10G0155300 Rhododendron simsii HOM05D007801 ORTHO05D009763 1.2e-15 86.3 84 60.7
Rhsim10G0155500 Rhododendron simsii HOM05D007801 ORTHO05D009763 1.2e-15 86.3 84 59.5
FAN23G2938 Fragaria x ananassa HOM05D007801 ORTHO05D009763 1.5e-15 85.9 80 65.0
CiPaw.04G094700 Carya illinoinensis HOM05D007801 ORTHO05D009763 2.6e-15 85.1 80 62.5
Manes.12G139700 Manihot esculenta HOM05D007801 ORTHO05D009763 5.7e-15 84.0 84 58.3
FAN19G1576 Fragaria x ananassa HOM05D007801 ORTHO05D009763 7.5e-15 83.6 80 63.8
FAN26G2641 Fragaria x ananassa HOM05D007801 ORTHO05D009763 9.8e-15 83.2 80 62.5
FAN28G2811 Fragaria x ananassa HOM05D007801 ORTHO05D009763 1.3e-14 82.8 80 61.2
TAR280G0007 Trochodendron aralioides HOM05D007801 ORTHO05D009763 1.3e-14 82.8 86 58.1
Rhsim10G0155200 Rhododendron simsii HOM05D007801 ORTHO05D009763 2.2e-14 82.0 83 59.0
Glyma.05G182100 Glycine max HOM05D007801 ORTHO05D009763 4.9e-14 80.9 79 59.5
Manes.13G088201 Manihot esculenta HOM05D007801 ORTHO05D009763 4.9e-14 80.9 80 53.8
TWI77G0824 Tripterygium wilfordii HOM05D007801 ORTHO05D009763 6.3e-14 80.5 87 57.5
Manes.13G088400 Manihot esculenta HOM05D007801 ORTHO05D009763 2.4e-13 78.6 79 53.2
Glyma.18G020600 Glycine max HOM05D007801 ORTHO05D009763 3.2e-13 78.2 78 57.7
Gohir.D12G094400 Gossypium hirsutum HOM05D007801 ORTHO05D009763 3.2e-13 78.2 78 55.1
Gorai.008G102600 Gossypium raimondii HOM05D007801 ORTHO05D009763 3.2e-13 78.2 78 55.1
Cpa.g.c48066 Carica papaya HOM05D007801 ORTHO05D009763 5.4e-13 77.4 78 56.4
TPR.G2202 Trifolium pratense HOM05D007801 ORTHO05D009763 7.0e-13 77.0 83 53.0
SalBow3G2462 Salvia bowleyana HOM05D007801 ORTHO05D009763 9.2e-13 76.6 86 54.7
Gohir.A12G076100 Gossypium hirsutum HOM05D007801 ORTHO05D009763 3.5e-12 74.7 78 52.6
Gorai.003G046000 Gossypium raimondii HOM05D007801 ORTHO05D009763 3.5e-12 74.7 80 51.2
Cc07_g15740 Coffea canephora HOM05D007801 ORTHO05D009763 4.6e-12 74.3 88 52.3
Cfa002725 Carpinus fangiana HOM05D007801 ORTHO05D009763 5.9e-12 73.9 86 57.0
Dinv21964 Davidia involucrata HOM05D007801 ORTHO05D009763 7.8e-12 73.6 78 57.7
Gohir.D03G044900 Gossypium hirsutum HOM05D007801 ORTHO05D009763 7.8e-12 73.6 80 51.2
Glyma.11G236500 Glycine max HOM05D007801 ORTHO05D009763 1.3e-11 72.8 79 54.4
Medtr8g091590 Medicago truncatula HOM05D007801 ORTHO05D009763 1.3e-11 72.8 80 52.5
TAR376G1197 Trochodendron aralioides HOM05D007801 ORTHO05D009763 1.3e-11 72.8 82 51.2
TAR376G0126 Trochodendron aralioides HOM05D007801 ORTHO05D009763 3.9e-11 71.2 81 49.4
Psat7g052400 Pisum sativum HOM05D007801 ORTHO05D009763 6.6e-11 70.5 82 51.2
Rhsim10G0155400 Rhododendron simsii HOM05D007801 ORTHO05D009763 1.5e-10 69.3 74 56.8
Peaxi162Scf00611g00068 Petunia axillaris HOM05D007801 ORTHO05D009763 2.5e-10 68.6 88 48.9
Gohir.A02G133600 Gossypium hirsutum HOM05D007801 ORTHO05D009763 4.3e-10 67.8 81 50.6
TWI74G0355 Tripterygium wilfordii HOM05D007801 ORTHO05D009763 4.3e-10 67.8 90 46.7
Gohir.D03G044800 Gossypium hirsutum HOM05D007801 ORTHO05D009763 5.6e-10 67.4 78 46.2
Gorai.003G045900 Gossypium raimondii HOM05D007801 ORTHO05D009763 5.6e-10 67.4 78 46.2
Oeu010979.1 Olea europaea HOM05D007801 ORTHO05D009763 5.6e-10 67.4 90 54.4
Phvul.002G263100 Phaseolus vulgaris HOM05D007801 ORTHO05D009763 5.6e-10 67.4 78 53.8
Gohir.A02G133400 Gossypium hirsutum HOM05D007801 ORTHO05D009763 2.1e-09 65.5 78 44.9
Peaxi162Scf00295g00003 Petunia axillaris HOM05D007801 ORTHO05D009763 2.1e-09 65.5 83 48.2
Rhsim10G0155600 Rhododendron simsii HOM05D007801 ORTHO05D009763 2.1e-09 65.5 69 56.5
Lalb_Chr12g0203631 Lupinus albus HOM05D007801 ORTHO05D009763 3.6e-09 64.7 79 51.9
Nitab4.5_0000818g0010 Nicotiana tabacum HOM05D007801 ORTHO05D009763 3.6e-09 64.7 85 48.2
Nitab4.5_0008777g0020 Nicotiana tabacum HOM05D007801 ORTHO05D009763 3.6e-09 64.7 89 46.1
Ca_17706_v3 Cicer arietinum L. HOM05D007801 ORTHO05D009763 4.7e-09 64.3 78 51.3
Ca_17707_v3 Cicer arietinum L. HOM05D007801 ORTHO05D009763 4.7e-09 64.3 78 51.3
Migut.H02407 Erythranthe guttata HOM05D007801 ORTHO05D009763 4.7e-09 64.3 99 46.5
Psat7g052320 Pisum sativum HOM05D007801 ORTHO05D009763 4.7e-09 64.3 82 48.8
PGSC0003DMG400030102 Solanum tuberosum HOM05D007801 ORTHO05D009763 6.2e-09 63.9 81 50.6
Nitab4.5_0006788g0020 Nicotiana tabacum HOM05D007801 ORTHO05D009763 1.0e-08 63.2 85 49.4
CSS0019659 Camellia sinensis var. sinensis HOM05D007801 ORTHO05D009763 3.1e-08 61.6 104 41.3
CSS0041778 Camellia sinensis var. sinensis HOM05D007801 ORTHO05D009763 3.1e-08 61.6 104 41.3
Eucgr.L03494 Eucalyptus grandis HOM05D007801 ORTHO05D009763 3.1e-08 61.6 91 46.2
Eucgr.I00345 Eucalyptus grandis HOM05D007801 ORTHO05D009763 4.0e-08 61.2 91 47.3
PGSC0003DMG400012798 Solanum tuberosum HOM05D007801 ORTHO05D009763 4.0e-08 61.2 79 49.4
Nn1g05241 Nelumbo nucifera HOM05D007801 ORTHO05D009763 1.5e-07 59.3 83 41.0
Solyc04g054340.1 Solanum lycopersicum HOM05D007801 ORTHO05D009763 1.5e-07 59.3 86 47.7
Lj4g0006489 Lotus japonicus HOM05D007801 ORTHO05D009763 2.0e-07 58.9 84 45.2
Sopen04g024140 Solanum pennellii HOM05D007801 ORTHO05D009763 2.0e-07 58.9 86 47.7
Ciclev10026857m.g Citrus clementina HOM05D007801 ORTHO05D009763 3.4e-07 58.2 90 44.4
ClCG01G019080 Citrullus lanatus HOM05D023936 ORTHO05D009763 4.4e-07 57.8 87 46.0
Nitab4.5_0004756g0030 Nicotiana tabacum HOM05D007801 ORTHO05D009763 4.4e-07 57.8 90 51.1
Peaxi162Scf00204g00033 Petunia axillaris HOM05D007801 ORTHO05D009763 4.4e-07 57.8 89 48.3
PGSC0003DMG400016738 Solanum tuberosum HOM05D007801 ORTHO05D009763 4.4e-07 57.8 92 46.7
Lj6g0013836 Lotus japonicus HOM05D007801 ORTHO05D009763 7.5e-07 57.0 79 43.0
Peaxi162Scf28863g00002 Petunia axillaris HOM05D007801 ORTHO05D009763 7.5e-07 57.0 77 45.5
Nn5g28972 Nelumbo nucifera HOM05D007801 ORTHO05D009763 9.8e-07 56.6 85 42.4
AL8G42740 Arabidopsis lyrata HOM05D008955 ORTHO05D011140 1.3e-06 56.2 81 48.1
Nitab4.5_0000727g0010 Nicotiana tabacum HOM05D007801 ORTHO05D009763 1.7e-06 55.8 90 50.0
Phvul.001G249500 Phaseolus vulgaris HOM05D007801 ORTHO05D009763 1.7e-06 55.8 78 47.4
Sed0002922 Sechium edule HOM05D023936 ORTHO05D009763 1.7e-06 55.8 79 46.8
Thhalv10005237m.g Eutrema salsugineum HOM05D008955 ORTHO05D011140 2.9e-06 55.1 78 43.6
Thhalv10015184m.g Eutrema salsugineum HOM05D008955 ORTHO05D011140 2.9e-06 55.1 78 46.2
Sed0023930 Sechium edule HOM05D023936 ORTHO05D009763 2.9e-06 55.1 79 46.8
C02p63900 Brassica napus HOM05D008955 ORTHO05D011140 4.9e-06 54.3 78 43.6
BolC2t12458H Brassica oleracea HOM05D008955 ORTHO05D011140 6.4e-06 53.9 78 43.6
CsaV3_6G045760 Cucumis sativus L. HOM05D023936 ORTHO05D009763 6.4e-06 53.9 91 39.6
Atru.chr4.329 Acer truncatum HOM05D007801 ORTHO05D009763 8.3e-06 53.5 83 45.8


User provided reference genes

Program Settings