Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.5e-125 451.1 241 100.0
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 6.3e-113 411.0 270 84.8
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.9e-111 404.4 241 89.6
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 5.9e-103 377.9 290 73.8
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 7.8e-103 377.5 241 82.2
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 1.6e-100 369.8 241 80.1
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 2.3e-99 365.9 241 79.7
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 3.1e-99 365.5 241 78.8
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 4.0e-99 365.2 241 78.0
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 4.4e-98 361.7 242 78.1
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 5.8e-98 361.3 241 77.6
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 7.5e-98 360.9 243 78.6
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 2.2e-97 359.4 241 78.0
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.2e-97 359.4 241 76.3
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 6.4e-97 357.8 241 76.8
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 8.3e-97 357.5 241 76.3
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 8.3e-97 357.5 241 76.8
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 7.0e-96 354.4 241 75.1
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.0e-95 352.8 242 76.0
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.0e-95 352.8 242 76.9
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.7e-95 352.4 242 76.4
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 3.5e-95 352.1 241 73.4
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 3.5e-95 352.1 242 75.6
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 4.6e-95 351.7 241 74.3
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 4.6e-95 351.7 241 76.3
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 4.6e-95 351.7 241 76.8
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.0e-95 351.3 241 75.1
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 7.8e-95 350.9 241 76.3
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 1.7e-94 349.7 241 74.7
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.0e-94 349.0 241 74.7
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 3.9e-94 348.6 241 76.3
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 8.6e-94 347.4 240 75.4
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 1.1e-93 347.1 241 75.5
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 1.9e-93 346.3 242 73.1
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 1.9e-93 346.3 242 74.0
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.5e-93 345.9 242 75.2
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 2.5e-93 345.9 241 73.9
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 75.2
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 5.6e-93 344.7 241 73.0
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 7.3e-93 344.4 241 74.3
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 9.5e-93 344.0 242 73.1
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.1e-92 342.8 242 73.1
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 2.8e-92 342.4 242 74.0
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 2.8e-92 342.4 241 73.9
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 3.6e-92 342.0 241 74.7
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 1.1e-91 340.5 242 73.6
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 1.1e-91 340.5 241 73.9
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 1.4e-91 340.1 239 76.6
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 2.3e-91 339.3 242 72.3
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 2.3e-91 339.3 282 66.0
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 5.2e-91 338.2 244 73.8
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 1.2e-90 337.0 244 73.0
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 5.8e-90 334.7 242 71.9
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 1.3e-89 333.6 243 74.5
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 1.7e-89 333.2 237 73.8
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 2.2e-89 332.8 239 74.5
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 2.9e-89 332.4 242 71.9
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 3.7e-89 332.0 241 70.5
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 8.3e-89 330.9 238 73.1
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 8.3e-89 330.9 242 71.5
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 1.9e-88 329.7 241 72.6
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.4e-88 329.3 241 71.8
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.1e-88 328.6 231 72.7
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 9.2e-88 327.4 220 75.9
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.2e-87 327.0 244 70.5
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 1.6e-87 326.6 241 70.1
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 2.1e-87 326.2 241 69.3
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 2.1e-87 326.2 243 71.2
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 2.7e-87 325.9 241 70.5
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 3.5e-87 325.5 242 71.1
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 3.5e-87 325.5 244 70.1
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 7.8e-87 324.3 241 69.7
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 1.0e-86 323.9 241 69.3
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.3e-86 323.6 241 68.0
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.3e-86 322.8 241 71.0
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 3.0e-86 322.4 241 70.1
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 3.9e-86 322.0 241 70.5
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 3.9e-86 322.0 222 75.7
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 5.1e-86 321.6 241 69.3
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 5.1e-86 321.6 242 69.0
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 5.1e-86 321.6 241 69.3
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 8.6e-86 320.9 245 70.2
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.1e-85 320.5 241 69.3
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 1.5e-85 320.1 241 68.5
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 1.9e-85 319.7 242 68.6
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.3e-85 318.9 241 70.5
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 7.3e-85 317.8 241 68.0
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 7.3e-85 317.8 243 70.0
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 2.1e-84 316.2 243 69.5
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 3.6e-84 315.5 245 69.0
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 1.4e-83 313.5 242 67.8
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 1.4e-83 313.5 242 67.8
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 1.4e-83 313.5 243 68.7
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 1.8e-83 313.2 243 68.3
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 3.1e-83 312.4 221 72.4
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 5.2e-83 311.6 246 66.7
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 5.2e-83 311.6 258 67.1
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.2e-82 310.5 244 67.6
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.2e-82 310.5 233 70.4
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 2.6e-82 309.3 196 82.7
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 2.6e-82 309.3 246 67.5
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 4.4e-82 308.5 244 67.6
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 5.8e-82 308.1 223 70.0
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 1.7e-81 306.6 228 68.4
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 2.2e-81 306.2 281 63.0
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.9e-81 305.8 258 66.3
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.7e-81 305.4 231 70.6
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 3.7e-81 305.4 243 68.7
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 4.9e-81 305.1 244 67.6
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 8.4e-81 304.3 278 60.4
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 1.1e-80 303.9 243 67.9
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 4.1e-80 302.0 197 79.2
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 3.5e-79 298.9 198 77.8
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 1.3e-78 297.0 196 78.1
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 1.7e-78 296.6 196 78.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 2.5e-77 292.7 244 64.3
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 9.6e-77 290.8 196 75.0
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 3.6e-76 288.9 199 76.4
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 3.6e-76 288.9 244 63.1
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 4.7e-76 288.5 196 77.0
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.7e-76 288.5 199 75.9
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 8.1e-76 287.7 199 75.4
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.0e-75 285.4 199 75.4
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 2.2e-73 279.6 287 55.7
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 4.9e-73 278.5 196 73.5
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 8.4e-73 277.7 238 63.4
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 1.0e-70 270.8 196 70.9
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 7.3e-69 264.6 179 74.9
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 1.6e-68 263.5 175 77.1
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.4e-67 260.4 242 58.7
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 2.0e-66 256.5 220 63.6
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 7.6e-66 254.6 188 71.3
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.9e-57 226.1 196 63.3
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 1.8e-54 216.9 231 53.7
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 1.5e-53 213.8 155 72.3
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 3.4e-50 202.6 135 74.8
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 2.5e-45 186.4 155 63.2
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 7.6e-42 174.9 130 68.5
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 9.3e-40 167.9 176 55.1
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.5e-37 160.6 149 61.7
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 7.4e-37 158.3 112 71.4
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 1.0e-30 137.9 198 39.4
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.9e-30 136.0 210 43.8
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 3.9e-30 136.0 220 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 2.0e-29 133.7 235 35.7
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 4.1e-27 125.9 209 36.4
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.0e-26 123.6 236 39.8
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 5.0e-25 119.0 99 64.6
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 8.5e-25 118.2 200 36.0
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 4.2e-24 115.9 215 34.0
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 7.4e-21 105.1 77 67.5
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.1e-16 91.3 63 77.8
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 9.4e-16 88.2 178 38.8
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 1.3e-12 77.8 69 56.5
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 3.1e-11 73.2 64 62.5
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 1.8e-06 57.4 41 73.2
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 2.3e-06 57.0 40 75.0


User provided reference genes

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