Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G074056 Populus trichocarpa HOM05D007561 ORTHO05D007661 3.1e-285 984.6 532 100.0
Potri.005G090000 Populus trichocarpa HOM05D007561 ORTHO05D007661 4.2e-226 788.1 537 81.8
Sabra05G0074100 Salix brachista HOM05D007561 ORTHO05D007661 7.4e-215 750.7 541 80.2
Sabra07G0062300 Salix brachista HOM05D007561 ORTHO05D007661 1.8e-189 666.4 457 82.1
Manes.04G066400 Manihot esculenta HOM05D007561 ORTHO05D007661 2.9e-142 509.6 541 57.3
TWI74G0078 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 6.7e-123 445.3 537 55.3
TAR561G0001 Trochodendron aralioides HOM05D007561 ORTHO05D007661 4.5e-119 432.6 575 48.3
TWI77G0394 Tripterygium wilfordii HOM05D007561 ORTHO05D007661 1.3e-118 431.0 538 54.6
Dinv37052 Davidia involucrata HOM05D007561 ORTHO05D007661 1.1e-109 401.4 575 50.4
Ciclev10013885m.g Citrus clementina HOM05D007561 ORTHO05D007661 6.7e-107 392.1 559 47.6
CiPaw.09G161100 Carya illinoinensis HOM05D007561 ORTHO05D007661 1.7e-94 350.9 580 49.1
Oeu020265.1 Olea europaea HOM05D007561 ORTHO05D007661 8.5e-94 348.6 553 44.8
Atru.chr8.931 Acer truncatum HOM05D007561 ORTHO05D007661 7.2e-93 345.5 551 48.3
Cpa.g.sc33.185 Carica papaya HOM05D007561 ORTHO05D007661 1.7e-89 334.3 540 45.0
Duzib177G0099 Durio zibethinus HOM05D007561 ORTHO05D007661 4.5e-87 326.2 553 46.1
Nitab4.5_0000613g0170 Nicotiana tabacum HOM05D007561 ORTHO05D007661 7.7e-87 325.5 542 43.5
MSTRG.19744 Avicennia marina HOM05D007561 ORTHO05D007661 3.8e-86 323.2 579 44.2
Nitab4.5_0000811g0050 Nicotiana tabacum HOM05D007561 ORTHO05D007661 5.5e-85 319.3 544 44.1
MSTRG.6258 Avicennia marina HOM05D007561 ORTHO05D007661 1.2e-84 318.2 565 44.6
Sopen10g031840 Solanum pennellii HOM05D007561 ORTHO05D007661 6.1e-84 315.8 533 44.3
SalBow6G6384 Salvia bowleyana HOM05D007561 ORTHO05D007661 1.0e-83 315.1 540 43.9
SalBow6G1989 Salvia bowleyana HOM05D007561 ORTHO05D007661 2.3e-83 313.9 539 44.2
PGSC0003DMG400028120 Solanum tuberosum HOM05D007561 ORTHO05D007661 4.0e-83 313.2 542 43.0
DCAR_009109 Daucus carota HOM05D007561 ORTHO05D007661 5.2e-83 312.8 569 43.4
Solyc10g081340.1 Solanum lycopersicum HOM05D007561 ORTHO05D007661 8.8e-83 312.0 532 43.8
Thecc.05G190500 Theobroma cacao HOM05D007561 ORTHO05D007661 4.9e-81 306.2 564 45.0
Migut.J01597 Erythranthe guttata HOM05D007561 ORTHO05D007661 1.3e-78 298.1 564 40.4
PSO732G0159 Papaver somniferum HOM05D007561 ORTHO05D007661 3.8e-78 296.6 545 43.3
CAN.G128.129 Capsicum annuum HOM05D007561 ORTHO05D007661 5.0e-78 296.2 549 41.2
Lj2A414T29 Lonicera japonica HOM05D007561 ORTHO05D007661 5.6e-77 292.7 545 43.5
PSO675G2416 Papaver somniferum HOM05D007561 ORTHO05D007661 1.6e-76 291.2 546 42.7
VMungo1383G3023 Vigna mungo HOM05D007561 ORTHO05D007661 6.1e-76 289.3 536 43.8
Phvul.001G109100 Phaseolus vulgaris HOM05D007561 ORTHO05D007661 1.0e-75 288.5 528 43.0
RhsimUnG0021900 Rhododendron simsii HOM05D007561 ORTHO05D007661 2.6e-74 283.9 535 43.0
Glyma.19G123300 Glycine max HOM05D007561 ORTHO05D007661 3.4e-74 283.5 519 43.0
Glyma.03G118900 Glycine max HOM05D007561 ORTHO05D007661 4.9e-73 279.6 535 43.9
Peaxi162Scf00575g00079 Petunia axillaris HOM05D007561 ORTHO05D007661 1.2e-71 275.0 532 40.0
Gorai.012G026500 Gossypium raimondii HOM05D007561 ORTHO05D007661 1.0e-70 271.9 499 44.7
Gohir.A13G114700 Gossypium hirsutum HOM05D007561 ORTHO05D007661 9.5e-69 265.4 504 42.9
Gorai.013G132100 Gossypium raimondii HOM05D007561 ORTHO05D007661 1.6e-68 264.6 505 42.8
Gohir.D13G117500 Gossypium hirsutum HOM05D007561 ORTHO05D007661 1.8e-67 261.2 504 42.5
Aqoxy2G00670 Aquilegia oxysepala HOM05D007561 ORTHO05D007661 4.0e-67 260.0 523 40.0
Eucgr.A02170 Eucalyptus grandis HOM05D007561 ORTHO05D007661 2.6e-66 257.3 630 38.4
AUR62020949 Chenopodium quinoa HOM05D007561 ORTHO05D007661 1.3e-65 255.0 571 43.4
AUR62018475 Chenopodium quinoa HOM05D007561 ORTHO05D007661 3.7e-65 253.4 581 39.9
GSVIVG01029894001 Vitis vinifera HOM05D007561 ORTHO05D007661 2.0e-63 247.7 549 40.1
PGR042G3351 Punica granatum HOM05D007561 ORTHO05D007661 3.5e-63 246.9 569 40.8
Gohir.A05G393000 Gossypium hirsutum HOM05D007561 ORTHO05D007661 4.6e-63 246.5 450 44.4
Gohir.D04G022850 Gossypium hirsutum HOM05D007561 ORTHO05D007661 6.0e-63 246.1 451 43.7
Actinidia18379 Actinidia chinensis HOM05D007561 ORTHO05D007661 8.6e-62 242.3 471 43.3
Medtr7g088200 Medicago truncatula HOM05D007561 ORTHO05D007661 1.5e-61 241.5 539 40.1
Ca_08339_v3 Cicer arietinum L. HOM05D007561 ORTHO05D007661 1.2e-60 238.4 541 39.2
Ah.04g149900 Amaranthus hybridus HOM05D007561 ORTHO05D007661 1.6e-60 238.0 581 38.7
SGA_v2.0_scaffold66G22349 Striga asiatica HOM05D007561 ORTHO05D007661 1.1e-59 235.3 428 42.1
CsaV3_3G039500 Cucumis sativus L. HOM05D007561 ORTHO05D007661 1.7e-57 228.0 587 36.6
Lj1g0025432 Lotus japonicus HOM05D007561 ORTHO05D007661 3.7e-57 226.9 508 39.8
HPP92_021156 Vanilla planifolia HOM05D007561 ORTHO05D007661 3.7e-57 226.9 516 38.6
MELO3C009692.2 Cucumis melo HOM05D007561 ORTHO05D007661 1.1e-56 225.3 585 37.4
Psat3g083040 Pisum sativum HOM05D007561 ORTHO05D007661 1.1e-56 225.3 565 37.7
Hma1.2p1_1686F.1_g297500 Hydrangea macrophylla HOM05D007561 ORTHO05D007661 1.4e-56 224.9 510 39.6
Sed0023829 Sechium edule HOM05D007561 ORTHO05D007661 2.7e-55 220.7 558 38.7
ClCG10G016860 Citrullus lanatus HOM05D007561 ORTHO05D007661 3.5e-55 220.3 550 39.1
Sed0024594 Sechium edule HOM05D007561 ORTHO05D007661 1.3e-54 218.4 541 38.8
Lalb_Chr22g0358291 Lupinus albus HOM05D007561 ORTHO05D007661 1.7e-54 218.0 567 35.6
FAN17G1891 Fragaria x ananassa HOM05D007561 ORTHO05D007661 3.0e-54 217.2 587 36.1
FAN22G1656 Fragaria x ananassa HOM05D007561 ORTHO05D007661 2.5e-53 214.2 598 36.6
FAN07G2764 Fragaria x ananassa HOM05D007561 ORTHO05D007661 1.2e-52 211.8 568 36.3
PGR042G3883 Punica granatum HOM05D007561 ORTHO05D007661 2.8e-52 210.7 504 38.3
FvH4_4g10470 Fragaria vesca HOM05D007561 ORTHO05D007661 3.6e-52 210.3 601 36.4
FAN12G2197 Fragaria x ananassa HOM05D007561 ORTHO05D007661 8.1e-52 209.1 604 35.6
ATR0068G026 Amborella trichopoda HOM05D007561 ORTHO05D007661 1.1e-51 208.8 502 36.5
SGA_v2.0_scaffold69G23211 Striga asiatica HOM05D007561 ORTHO05D007661 5.2e-51 206.5 491 39.5
RcHm_v2.0_Chr3g0495011 Rosa chinensis HOM05D007561 ORTHO05D007661 1.5e-50 204.9 587 35.1
FAN12G0994 Fragaria x ananassa HOM05D007561 ORTHO05D007661 6.4e-49 199.5 568 36.4
Sc13g0000670 Simmondsia chinensis HOM05D007561 ORTHO05D007661 6.0e-47 193.0 462 38.3
Haze_20355 Corylus avellana HOM05D007561 ORTHO05D007661 1.3e-46 191.8 516 35.1
QL02p091854 Quercus lobata HOM05D007561 ORTHO05D007661 8.6e-46 189.1 463 39.3
PSO384G3070 Papaver somniferum HOM05D007561 ORTHO05D007661 4.3e-45 186.8 548 33.4
PSO339G6289 Papaver somniferum HOM05D007561 ORTHO05D007661 6.9e-43 179.5 540 33.7
COL.COLO4_05647 Corchorus olitorius HOM05D007561 ORTHO05D007661 9.6e-37 159.1 539 37.1
Cfa019892 Carpinus fangiana HOM05D007561 ORTHO05D007661 3.6e-36 157.1 412 34.0
CANSAT78G1013 Cannabis sativa HOM05D007561 ORTHO05D007661 2.2e-33 147.9 516 31.8
PGR142G0684 Punica granatum HOM05D007561 ORTHO05D007661 1.9e-32 144.8 408 36.0
Migut.K00204 Erythranthe guttata HOM05D007561 ORTHO05D007661 6.0e-31 139.8 503 32.4
MD12G1110900 Malus domestica HOM05D007561 ORTHO05D007661 1.8e-30 138.3 542 33.4
MBI15_g01650_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 3.6e-28 130.6 125 56.8
SEGI_17426 Sequoiadendron giganteum HOM05D007561 ORTHO05D007661 6.2e-28 129.8 508 30.9
AT5G04190 Arabidopsis thaliana HOM05D011214 ORTHO05D007661 1.4e-27 128.6 525 29.5
Sp6g38560 Schrenkiella parvula HOM05D011214 ORTHO05D007661 2.0e-26 124.8 524 31.5
BcaB05g21770 Brassica carinata HOM05D011214 ORTHO05D007661 3.4e-26 124.0 510 30.4
TPR.G23681 Trifolium pratense HOM05D007561 ORTHO05D007661 3.4e-26 124.0 552 29.9
CARHR209070 Cardamine hirsuta HOM05D011214 ORTHO05D007661 1.3e-25 122.1 496 31.5
A10p31950 Brassica napus HOM05D011214 ORTHO05D007661 1.7e-25 121.7 481 31.6
BraA10t45239Z Brassica rapa HOM05D011214 ORTHO05D007661 2.2e-25 121.3 482 31.5
BcaC06g32123 Brassica carinata HOM05D011214 ORTHO05D007661 1.1e-24 119.0 497 32.2
BolC9t60006H Brassica oleracea HOM05D011214 ORTHO05D007661 1.4e-24 118.6 519 30.6
THA.LOC104816415 Tarenaya hassleriana HOM05D011214 ORTHO05D007661 1.4e-24 118.6 540 29.3
Prupe.7G023100 Prunus persica HOM05D007561 ORTHO05D007661 7.1e-24 116.3 415 31.3
AL6G13810 Arabidopsis lyrata HOM05D011214 ORTHO05D007661 9.3e-24 115.9 508 29.3
C09p72660 Brassica napus HOM05D011214 ORTHO05D007661 2.7e-23 114.4 522 30.7
C02p01830 Brassica napus HOM05D011214 ORTHO05D007661 6.0e-23 113.2 488 29.7
unitig_899.g15656 Utricularia gibba HOM05D007561 ORTHO05D007661 6.0e-23 113.2 246 38.6
BraA02t04803Z Brassica rapa HOM05D011214 ORTHO05D007661 1.3e-22 112.1 485 28.5
BcaC06g32122 Brassica carinata HOM05D011214 ORTHO05D007661 1.8e-22 111.7 494 31.2
Thhalv10015710m.g Eutrema salsugineum HOM05D011214 ORTHO05D007661 1.9e-21 108.2 496 30.2
Zm00001eb333260 Zea mays HOM05D007561 ORTHO05D007661 1.9e-21 108.2 454 35.5
BolC2t06140H Brassica oleracea HOM05D011214 ORTHO05D007661 2.5e-21 107.8 531 29.0
MBI14_g08053_MAGBIO Magnolia biondii HOM05D007561 ORTHO05D007661 5.6e-21 106.7 104 56.7
Carub.0006s0314 Capsella rubella HOM05D011214 ORTHO05D007661 1.6e-20 105.1 520 29.8
BcaC03g12952 Brassica carinata HOM05D011214 ORTHO05D007661 1.8e-19 101.7 530 28.9
VMungo0464G1428 Vigna mungo HOM05D025134 ORTHO05D020753 2.9e-17 94.4 349 32.4
Phvul.004G052600 Phaseolus vulgaris HOM05D025134 ORTHO05D020753 8.4e-17 92.8 427 31.4
SEGI_34192 Sequoiadendron giganteum HOM05D035901 ORTHO05D007661 4.2e-16 90.5 552 25.7
CDE09G0510 Ceratophyllum demersum HOM05D044076 ORTHO05D007661 5.5e-16 90.1 384 28.1
CDE08G0002 Ceratophyllum demersum HOM05D044076 ORTHO05D007661 7.9e-15 86.3 385 28.6
Peaxi162Scf00541g00022 Petunia axillaris HOM05D002654 ORTHO05D002430 4.3e-13 80.5 452 26.5
CDE02G3247 Ceratophyllum demersum HOM05D044834 ORTHO05D007661 5.7e-13 80.1 371 27.2
Os01g0264600 Oryza sativa ssp. japonica HOM05D007561 ORTHO05D007661 1.3e-12 79.0 451 31.9
MBI02_g39064_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 4.8e-12 77.0 488 27.3
MBI05_g08278_MAGBIO Magnolia biondii HOM05D002654 ORTHO05D002430 1.4e-11 75.5 466 26.0
TAR629G0269 Trochodendron aralioides HOM05D002654 ORTHO05D002430 3.1e-11 74.3 570 22.6
CiPaw.05G136200 Carya illinoinensis HOM05D002654 ORTHO05D002430 4.1e-11 73.9 526 23.0
Eucgr.G02509 Eucalyptus grandis HOM05D002654 ORTHO05D002430 5.3e-11 73.6 519 25.0
SalBow7G1820 Salvia bowleyana HOM05D017717 ORTHO05D007661 5.3e-11 73.6 119 42.9
Rhsim12G0063400 Rhododendron simsii HOM05D002654 ORTHO05D002430 1.5e-10 72.0 442 25.1
CSS0017824 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 2.6e-10 71.2 555 23.6
SalBow8G1166 Salvia bowleyana HOM05D017717 ORTHO05D007661 2.6e-10 71.2 114 42.1
CDE04G0982 Ceratophyllum demersum HOM05D007561 ORTHO05D007661 7.6e-10 69.7 443 23.7
TAR371G1053 Trochodendron aralioides HOM05D002654 ORTHO05D002430 7.6e-10 69.7 473 25.2
SGA_v2.0_scaffold139G35361 Striga asiatica HOM05D007561 ORTHO05D007661 1.0e-09 69.3 73 52.1
QL03p062934 Quercus lobata HOM05D002654 ORTHO05D002430 1.3e-09 68.9 507 23.7
CSS0046015 Camellia sinensis var. sinensis HOM05D002654 ORTHO05D002430 1.7e-09 68.6 555 23.4
vmacro01254 Vaccinium macrocarpon HOM05D002654 ORTHO05D002430 2.2e-09 68.2 469 24.1
Nn3g17221 Nelumbo nucifera HOM05D002654 ORTHO05D002430 2.9e-09 67.8 525 25.1
QL03p064352 Quercus lobata HOM05D002654 ORTHO05D002430 2.9e-09 67.8 507 23.7
Nitab4.5_0000703g0220 Nicotiana tabacum HOM05D002654 ORTHO05D002430 5.0e-09 67.0 478 24.5
Sc19g0007720 Simmondsia chinensis HOM05D007561 ORTHO05D007661 5.0e-09 67.0 302 28.1
ECA234G4854 Erigeron canadensis HOM05D000087 ORTHO05D000439 6.5e-09 66.6 533 24.0
SalBow8G1826 Salvia bowleyana HOM05D017717 ORTHO05D007661 1.1e-08 65.9 90 45.6
CDE07G1728 Ceratophyllum demersum HOM05D004853 ORTHO05D005865 1.9e-08 65.1 440 22.7
Cpa.g.sc128.17 Carica papaya HOM05D002654 ORTHO05D002430 3.2e-08 64.3 466 26.6
CDE04G1501 Ceratophyllum demersum HOM05D044834 ORTHO05D007661 3.2e-08 64.3 362 27.1
DCAR_016891 Daucus carota HOM05D007561 ORTHO05D007661 5.5e-08 63.5 110 40.9
Glyma.02G106800 Glycine max HOM05D002654 ORTHO05D002430 1.6e-07 62.0 494 23.1
SEGI_09092 Sequoiadendron giganteum HOM05D035901 ORTHO05D007661 1.6e-07 62.0 206 28.6
Glyma.01G046600 Glycine max HOM05D002654 ORTHO05D002430 2.7e-07 61.2 509 22.2
DCAR_024160 Daucus carota HOM05D002654 ORTHO05D002430 3.6e-07 60.8 550 23.6
Dinv16639 Davidia involucrata HOM05D002654 ORTHO05D002430 6.1e-07 60.1 443 23.5
Lalb_Chr10g0098231 Lupinus albus HOM05D002654 ORTHO05D002430 6.1e-07 60.1 503 23.3
Ciclev10031315m.g Citrus clementina HOM05D002654 ORTHO05D002430 7.9e-07 59.7 437 24.5
Duzib205G1664 Durio zibethinus HOM05D002654 ORTHO05D002430 7.9e-07 59.7 438 24.7
SEGI_32896 Sequoiadendron giganteum HOM05D000006 ORTHO05D007661 7.9e-07 59.7 447 24.6
CANSAT64G2692 Cannabis sativa HOM05D002654 ORTHO05D002430 1.0e-06 59.3 461 24.7
Nitab4.5_0007501g0020 Nicotiana tabacum HOM05D002654 ORTHO05D002430 1.0e-06 59.3 447 24.8
CiPaw.06G084100 Carya illinoinensis HOM05D002654 ORTHO05D002430 1.3e-06 58.9 333 27.9
ATR0564G399 Amborella trichopoda HOM05D002654 ORTHO05D002430 1.8e-06 58.5 504 23.4
Cfa008990 Carpinus fangiana HOM05D002654 ORTHO05D002430 1.8e-06 58.5 521 22.8
Thecc.03G084900 Theobroma cacao HOM05D002654 ORTHO05D002430 3.0e-06 57.8 432 24.5
Ah.02g129730 Amaranthus hybridus HOM05D002654 ORTHO05D002430 3.9e-06 57.4 546 24.5
Hma1.2p1_0795F.1_g218740 Hydrangea macrophylla HOM05D002654 ORTHO05D002430 5.1e-06 57.0 347 26.5
CAN.G58.27 Capsicum annuum HOM05D002654 ORTHO05D002430 6.7e-06 56.6 487 24.0
Cc11_g13080 Coffea canephora HOM05D002654 ORTHO05D002430 6.7e-06 56.6 458 24.7
Duzib251G0139 Durio zibethinus HOM05D002654 ORTHO05D002430 6.7e-06 56.6 349 27.2
Prupe.1G273300 Prunus persica HOM05D002654 ORTHO05D002430 8.7e-06 56.2 445 23.8


User provided reference genes

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