Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G071000 Populus trichocarpa HOM05D004567 ORTHO05D005726 6.8e-309 1063.1 534 100.0
Sabra07G0059700 Salix brachista HOM05D004567 ORTHO05D005726 1.3e-288 995.7 534 94.0
Manes.11G065400 Manihot esculenta HOM05D004567 ORTHO05D005726 2.2e-235 818.9 541 77.1
Manes.04G103500 Manihot esculenta HOM05D004567 ORTHO05D005726 6.5e-227 790.8 543 72.2
TWI74G0160 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 3.6e-225 785.0 541 73.9
Cfa022165 Carpinus fangiana HOM05D004567 ORTHO05D005726 7.5e-223 777.3 541 73.0
Thecc.02G160600 Theobroma cacao HOM05D004567 ORTHO05D005726 2.9e-219 765.4 542 71.8
Duzib132G0874 Durio zibethinus HOM05D004567 ORTHO05D005726 1.9e-218 762.7 543 71.1
Ciclev10031151m.g Citrus clementina HOM05D004567 ORTHO05D005726 2.7e-217 758.8 532 72.2
Gorai.012G133500 Gossypium raimondii HOM05D004567 ORTHO05D005726 8.0e-217 757.3 545 69.9
Gohir.D04G147500 Gossypium hirsutum HOM05D004567 ORTHO05D005726 2.3e-216 755.7 545 69.7
TWI53G0531 Tripterygium wilfordii HOM05D004567 ORTHO05D005726 1.5e-215 753.1 559 69.6
TAR369G0463 Trochodendron aralioides HOM05D004567 ORTHO05D005726 2.6e-215 752.3 555 70.3
GSVIVG01012041001 Vitis vinifera HOM05D004567 ORTHO05D005726 3.4e-215 751.9 549 70.3
Gohir.A04G107700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 4.4e-215 751.5 545 69.4
Atru.chr10.1157 Acer truncatum HOM05D004567 ORTHO05D005726 1.3e-214 750.0 537 71.7
CANSAT25G2547 Cannabis sativa HOM05D004567 ORTHO05D005726 1.0e-211 740.3 542 69.0
Haze_02919 Corylus avellana HOM05D004567 ORTHO05D005726 1.3e-211 740.0 527 71.3
QL04p025799 Quercus lobata HOM05D004567 ORTHO05D005726 1.3e-211 740.0 536 71.1
Hma1.2p1_1513F.1_g288000 Hydrangea macrophylla HOM05D004567 ORTHO05D005726 1.1e-210 736.9 552 68.5
Prupe.2G113700 Prunus persica HOM05D004567 ORTHO05D005726 5.2e-208 728.0 509 72.1
RcHm_v2.0_Chr1g0343571 Rosa chinensis HOM05D004567 ORTHO05D005726 2.4e-205 719.2 508 71.5
FvH4_7g08600 Fragaria vesca HOM05D004567 ORTHO05D005726 1.0e-203 713.8 528 68.9
MD07G1086800 Malus domestica HOM05D004567 ORTHO05D005726 2.3e-203 712.6 528 69.1
FAN03G0634 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.9e-203 712.2 528 68.8
FAN10G2749 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.9e-203 712.2 528 68.8
FAN06G1075 Fragaria x ananassa HOM05D004567 ORTHO05D005726 8.6e-203 710.7 528 68.8
FAN01G2992 Fragaria x ananassa HOM05D004567 ORTHO05D005726 1.5e-202 709.9 528 68.9
Gohir.D12G137700 Gossypium hirsutum HOM05D004567 ORTHO05D005726 7.3e-202 707.6 541 66.4
Actinidia11176 Actinidia chinensis HOM05D004567 ORTHO05D005726 2.1e-201 706.1 550 66.4
FAN10G3814 Fragaria x ananassa HOM05D004567 ORTHO05D005726 2.1e-201 706.1 528 68.8
Ca_23147_v3 Cicer arietinum L. HOM05D004567 ORTHO05D005726 8.0e-201 704.1 536 66.0
Lalb_Chr13g0290871 Lupinus albus HOM05D004567 ORTHO05D005726 4.0e-200 701.8 533 65.9
Gorai.008G149200 Gossypium raimondii HOM05D004567 ORTHO05D005726 1.5e-199 699.9 543 65.9
Eucgr.J00860 Eucalyptus grandis HOM05D004567 ORTHO05D005726 2.6e-199 699.1 519 68.0
Dinv41785 Davidia involucrata HOM05D004567 ORTHO05D005726 7.5e-199 697.6 505 72.1
Lj3g0010315 Lotus japonicus HOM05D004567 ORTHO05D005726 7.5e-199 697.6 542 65.7
CsaV3_4G009100 Cucumis sativus L. HOM05D004567 ORTHO05D005726 1.3e-198 696.8 541 66.2
TPR.G17362 Trifolium pratense HOM05D004567 ORTHO05D005726 1.7e-198 696.4 540 66.1
Psat4g218760 Pisum sativum HOM05D004567 ORTHO05D005726 4.9e-198 694.9 538 65.2
THA.LOC104815215 Tarenaya hassleriana HOM05D004567 ORTHO05D005726 1.1e-197 693.7 540 64.3
MD02G1226800 Malus domestica HOM05D004567 ORTHO05D005726 1.4e-197 693.3 528 68.2
Medtr8g009530 Medicago truncatula HOM05D004567 ORTHO05D005726 1.4e-197 693.3 541 64.5
MBI01_g01364_MAGBIO Magnolia biondii HOM05D004567 ORTHO05D005726 3.2e-197 692.2 557 65.0
Glyma.07G121300 Glycine max HOM05D004567 ORTHO05D005726 2.7e-196 689.1 551 64.8
Sed0017461 Sechium edule HOM05D004567 ORTHO05D005726 3.0e-195 685.6 546 64.7
VMungo0331G0285 Vigna mungo HOM05D004567 ORTHO05D005726 3.0e-195 685.6 536 64.2
Nn4g22147 Nelumbo nucifera HOM05D004567 ORTHO05D005726 3.9e-195 685.3 546 65.4
AT1G50120 Arabidopsis thaliana HOM05D004567 ORTHO05D005726 8.6e-195 684.1 533 63.4
Cc00_g04630 Coffea canephora HOM05D004567 ORTHO05D005726 8.6e-195 684.1 541 64.9
Oeu037755.1 Olea europaea HOM05D004567 ORTHO05D005726 1.5e-194 683.3 539 65.1
Phvul.010G040700 Phaseolus vulgaris HOM05D004567 ORTHO05D005726 7.3e-194 681.0 539 64.2
AL1G57750 Arabidopsis lyrata HOM05D004567 ORTHO05D005726 1.2e-191 673.7 513 64.5
Sopen11g010070 Solanum pennellii HOM05D004567 ORTHO05D005726 5.8e-191 671.4 537 63.1
CiPaw.14G015900 Carya illinoinensis HOM05D004567 ORTHO05D005726 9.8e-191 670.6 492 69.5
PSO063G1783 Papaver somniferum HOM05D004567 ORTHO05D005726 2.4e-189 666.0 549 63.8
DCAR_011423 Daucus carota HOM05D004567 ORTHO05D005726 3.2e-189 665.6 540 62.4
Thhalv10011376m.g Eutrema salsugineum HOM05D004567 ORTHO05D005726 9.2e-189 664.1 534 62.2
CSS0021756 Camellia sinensis var. sinensis HOM05D004567 ORTHO05D005726 1.3e-187 660.2 553 62.9
Migut.N03351 Erythranthe guttata HOM05D004567 ORTHO05D005726 2.3e-187 659.4 534 63.7
Sp1g37000 Schrenkiella parvula HOM05D004567 ORTHO05D005726 3.0e-187 659.1 534 61.8
arahy.Tifrunner.gnm1.ann1.JL30IG Arachis hypogaea HOM05D004567 ORTHO05D005726 1.5e-186 656.8 544 63.1
arahy.Tifrunner.gnm1.ann1.2EVD6N Arachis hypogaea HOM05D004567 ORTHO05D005726 2.5e-186 656.0 527 64.3
CARHR040180 Cardamine hirsuta HOM05D004567 ORTHO05D005726 3.3e-186 655.6 534 61.8
PSO832G3127 Papaver somniferum HOM05D004567 ORTHO05D005726 7.3e-186 654.4 549 62.7
Carub.0001s3927 Capsella rubella HOM05D004567 ORTHO05D005726 4.7e-185 651.7 535 61.3
Aa31LG10G4020 Aethionema arabicum HOM05D004567 ORTHO05D005726 1.1e-184 650.6 558 60.0
Aqoxy7G00425 Aquilegia oxysepala HOM05D004567 ORTHO05D005726 1.1e-184 650.6 565 59.8
Peaxi162Scf01013g00124 Petunia axillaris HOM05D004567 ORTHO05D005726 2.3e-184 649.4 509 63.5
Gohir.A12G134100 Gossypium hirsutum HOM05D004567 ORTHO05D005726 5.2e-184 648.3 541 62.5
EL10Ac9g22943 Beta vulgaris HOM05D004567 ORTHO05D005726 2.0e-183 646.4 558 60.0
vmacro12414 Vaccinium macrocarpon HOM05D004567 ORTHO05D005726 2.0e-183 646.4 691 52.2
Ah.01g012240 Amaranthus hybridus HOM05D004567 ORTHO05D005726 2.9e-182 642.5 545 59.4
AUR62017692 Chenopodium quinoa HOM05D004567 ORTHO05D005726 6.4e-182 641.3 575 57.7
Glyma.03G102500 Glycine max HOM05D004567 ORTHO05D005726 7.1e-181 637.9 550 62.2
PSO339G1936 Papaver somniferum HOM05D004567 ORTHO05D005726 6.0e-180 634.8 541 62.1
SalBow7G4790 Salvia bowleyana HOM05D004567 ORTHO05D005726 3.9e-179 632.1 542 60.1
SGA_v2.0_scaffold24G10556 Striga asiatica HOM05D004567 ORTHO05D005726 2.8e-177 625.9 517 62.7
ECA246G0539 Erigeron canadensis HOM05D004567 ORTHO05D005726 8.1e-177 624.4 543 59.1
A08p03320 Brassica napus HOM05D004567 ORTHO05D005726 1.1e-176 624.0 540 59.4
BolC3t21263H Brassica oleracea HOM05D004567 ORTHO05D005726 1.4e-176 623.6 541 59.3
BcaB04g17271 Brassica carinata HOM05D004567 ORTHO05D005726 1.2e-175 620.5 542 59.6
BraA06t23544Z Brassica rapa HOM05D004567 ORTHO05D005726 1.2e-175 620.5 536 59.1
BolC6t35627H Brassica oleracea HOM05D004567 ORTHO05D005726 2.0e-175 619.8 536 59.1
C03p89490 Brassica napus HOM05D004567 ORTHO05D005726 3.4e-175 619.0 541 59.0
BcaC08g43196 Brassica carinata HOM05D004567 ORTHO05D005726 8.4e-174 614.4 536 58.8
Lsat_1_v5_gn_5_37660 Lactuca sativa HOM05D004567 ORTHO05D005726 8.4e-174 614.4 517 60.5
Lj7A481G48 Lonicera japonica HOM05D004567 ORTHO05D005726 1.9e-173 613.2 553 61.8
Sc11g0003400 Simmondsia chinensis HOM05D004567 ORTHO05D005726 5.4e-173 611.7 539 58.4
C06p05010 Brassica napus HOM05D004567 ORTHO05D005726 9.2e-173 610.9 536 58.4
BcaB07g33468 Brassica carinata HOM05D004567 ORTHO05D005726 4.6e-172 608.6 530 59.8
BraA08t32365Z Brassica rapa HOM05D004567 ORTHO05D005726 5.1e-171 605.1 581 54.7
Duzib052G0538 Durio zibethinus HOM05D004567 ORTHO05D005726 1.6e-169 600.1 539 60.3
A06p03360 Brassica napus HOM05D004567 ORTHO05D005726 3.6e-169 599.0 545 57.1
ATR0605G273 Amborella trichopoda HOM05D004567 ORTHO05D005726 8.1e-169 597.8 556 54.3
Solyc11g019960.2 Solanum lycopersicum HOM05D004567 ORTHO05D005726 1.9e-165 586.6 490 62.0
HanXRQChr12g0379741 Helianthus annuus HOM05D004567 ORTHO05D005726 1.6e-164 583.6 514 60.5
Nitab4.5_0000167g0100 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.3e-161 573.9 411 69.1
AUR62015228 Chenopodium quinoa HOM05D004567 ORTHO05D005726 1.1e-160 570.9 545 55.8
CAN.G2.11 Capsicum annuum HOM05D004567 ORTHO05D005726 1.7e-158 563.5 438 63.9
CDE02G2175 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.3e-147 527.3 493 57.2
HPP92_002998 Vanilla planifolia HOM05D004567 ORTHO05D005726 3.0e-147 526.2 544 52.0
Rhsim06G0125800 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.9e-146 523.5 695 46.6
CDE08G0826 Ceratophyllum demersum HOM05D004567 ORTHO05D005726 1.8e-144 516.9 554 52.7
Nn3g16289 Nelumbo nucifera HOM05D004567 ORTHO05D005726 6.9e-144 515.0 475 57.9
Cpa.g.sc0.161 Carica papaya HOM05D004567 ORTHO05D005726 2.0e-135 486.9 342 73.1
Hund24369 Selenicereus undatus HOM05D004567 ORTHO05D005726 2.5e-130 469.9 421 58.2
PGSC0003DMG401027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 4.5e-119 432.6 322 68.0
Oeu029993.1 Olea europaea HOM05D004567 ORTHO05D005726 2.7e-116 423.3 341 63.9
MELO3C018973.2 Cucumis melo HOM05D004567 ORTHO05D005726 8.0e-116 421.8 391 59.1
Nitab4.5_0004158g0010 Nicotiana tabacum HOM05D004567 ORTHO05D005726 3.0e-115 419.9 322 66.5
A06p03590 Brassica napus HOM05D004567 ORTHO05D005726 6.1e-108 395.6 328 64.6
Mapoly0026s0045 Marchantia polymorpha HOM05D004567 ORTHO05D005726 2.5e-101 373.6 526 40.3
Os06g0618600 Oryza sativa ssp. japonica HOM05D004567 ORTHO05D005726 4.4e-98 362.8 378 52.9
Pp3c23_19720 Physcomitrium patens HOM05D004567 ORTHO05D005726 1.4e-96 357.8 517 41.2
Pp3c20_6950 Physcomitrium patens HOM05D004567 ORTHO05D005726 5.4e-96 355.9 525 40.6
unitig_578.g16282 Utricularia gibba HOM05D004567 ORTHO05D005726 1.8e-91 340.9 360 51.4
AagrBONN_evm.TU.Sc2ySwM_228.3324 Anthoceros agrestis HOM05D004567 ORTHO05D005726 4.0e-91 339.7 529 36.1
SMO367G1304 Selaginella moellendorffii HOM05D004567 ORTHO05D005726 1.7e-89 334.3 530 37.5
ClCG10G008360 Citrullus lanatus HOM05D004567 ORTHO05D005726 1.7e-86 324.3 341 54.8
Zm00001eb066810 Zea mays HOM05D004567 ORTHO05D005726 2.9e-86 323.6 407 47.4
SEGI_15833 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 1.3e-81 308.1 331 48.9
BraA06t23566Z Brassica rapa HOM05D004567 ORTHO05D005726 1.0e-62 245.4 151 76.8
Cfa022169 Carpinus fangiana HOM05D004567 ORTHO05D005726 1.2e-60 238.4 132 86.4
Nitab4.5_0004158g0020 Nicotiana tabacum HOM05D004567 ORTHO05D005726 1.2e-60 238.4 199 59.3
Oeu029992.1 Olea europaea HOM05D004567 ORTHO05D005726 4.4e-58 229.9 151 70.9
Duzib248G1520 Durio zibethinus HOM05D004567 ORTHO05D005726 2.2e-57 227.6 134 79.9
C06p05100 Brassica napus HOM05D004567 ORTHO05D005726 4.9e-57 226.5 171 66.1
PGSC0003DMG402027620 Solanum tuberosum HOM05D004567 ORTHO05D005726 6.6e-54 216.1 177 59.9
unitig_44.g31559 Utricularia gibba HOM05D004567 ORTHO05D005726 1.3e-52 211.8 140 69.3
Oeu029994.1 Olea europaea HOM05D004567 ORTHO05D005726 7.8e-47 192.6 208 52.9
ClCG10G008380 Citrullus lanatus HOM05D004567 ORTHO05D005726 2.3e-46 191.0 104 81.7
CBR_g8998 Chara braunii HOM05D004567 ORTHO05D005726 9.3e-40 169.1 579 25.0
Rhsim06G0125500 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.5e-32 144.4 156 53.2
ClCG10G008350 Citrullus lanatus HOM05D004567 ORTHO05D005726 3.0e-30 137.5 121 58.7
Cpa.g.sc0.162 Carica papaya HOM05D004567 ORTHO05D005726 1.9e-29 134.8 98 65.3
Rhsim04G0129600 Rhododendron simsii HOM05D004567 ORTHO05D005726 9.6e-29 132.5 99 64.6
Sed0015165 Sechium edule HOM05D004567 ORTHO05D005726 5.5e-24 116.7 121 49.6
unitig_578.g16281 Utricularia gibba HOM05D004567 ORTHO05D005726 1.6e-23 115.2 133 45.9
FAN11G1323 Fragaria x ananassa HOM05D004567 ORTHO05D005726 3.5e-23 114.0 95 60.0
SHI31088 Sapria himalayana HOM05D004567 ORTHO05D005726 3.0e-22 110.9 95 58.9
Rhsim06G0125600 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.6e-20 105.1 81 66.7
Rhsim06G0125400 Rhododendron simsii HOM05D004567 ORTHO05D005726 2.4e-19 101.3 53 84.9
QL01p003984 Quercus lobata HOM05D004567 ORTHO05D000318 1.9e-16 91.7 69 62.3
Actinidia24396 Actinidia chinensis HOM05D004567 ORTHO05D005726 5.5e-16 90.1 74 60.8
SEGI_26710 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 3.3e-13 80.9 80 51.2
TAR623G0420 Trochodendron aralioides HOM05D004567 ORTHO05D037809 1.7e-12 78.6 153 38.6
Rhsim04G0129400 Rhododendron simsii HOM05D004567 ORTHO05D005726 1.4e-11 75.5 104 44.2
Sed0023875 Sechium edule HOM05D004567 ORTHO05D005726 5.0e-09 67.0 76 43.4
SEGI_29421 Sequoiadendron giganteum HOM05D004567 ORTHO05D005726 2.5e-08 64.7 76 40.8
Cre06.g258400 Chlamydomonas reinhardtii HOM05D004567 ORTHO05D005726 1.0e-06 59.3 126 24.6


User provided reference genes

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