Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G069300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.0e-218 763.1 373 100.0
Sabra07G0056700 Salix brachista HOM05D003670 ORTHO05D004767 1.2e-190 669.8 392 85.7
Manes.06G175700 Manihot esculenta HOM05D003670 ORTHO05D004767 1.3e-184 649.8 378 84.4
Manes.14G010300 Manihot esculenta HOM05D003670 ORTHO05D004767 1.7e-181 639.4 376 82.2
CiPaw.11G061900 Carya illinoinensis HOM05D003670 ORTHO05D004767 3.8e-181 638.3 378 82.5
QL04p088520 Quercus lobata HOM05D003670 ORTHO05D004767 4.9e-181 637.9 402 77.6
PGR031G1669 Punica granatum HOM05D003670 ORTHO05D004767 6.7e-178 627.5 380 80.3
CSS0006756 Camellia sinensis var. sinensis HOM05D003670 ORTHO05D004767 5.6e-177 624.4 377 80.6
Lj3g0014239 Lotus japonicus HOM05D003670 ORTHO05D004767 7.4e-177 624.0 378 80.4
Thecc.07G180400 Theobroma cacao HOM05D003670 ORTHO05D004767 1.6e-176 622.9 378 80.2
GSVIVG01036786001 Vitis vinifera HOM05D003670 ORTHO05D004767 1.6e-176 622.9 377 79.8
Gohir.D13G127300 Gossypium hirsutum HOM05D003670 ORTHO05D004767 3.1e-175 618.6 377 79.3
Gohir.A13G123400 Gossypium hirsutum HOM05D003670 ORTHO05D004767 6.9e-175 617.5 377 78.8
Hma1.2p1_0151F.1_g067325 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 6.9e-175 617.5 378 80.2
Glyma.08G167100 Glycine max HOM05D003670 ORTHO05D004767 9.0e-175 617.1 381 80.1
Gorai.013G142500 Gossypium raimondii HOM05D003670 ORTHO05D004767 9.0e-175 617.1 378 79.4
Rhsim06G0242300 Rhododendron simsii HOM05D003670 ORTHO05D004767 2.6e-174 615.5 400 76.2
Prupe.4G134300 Prunus persica HOM05D003670 ORTHO05D004767 3.4e-174 615.1 378 78.6
MD05G1228000 Malus domestica HOM05D003670 ORTHO05D004767 7.6e-174 614.0 377 78.8
MD10G1208500 Malus domestica HOM05D003670 ORTHO05D004767 7.6e-174 614.0 377 79.3
Phvul.005G050400 Phaseolus vulgaris HOM05D003670 ORTHO05D004767 1.3e-173 613.2 381 79.8
Ciclev10005196m.g Citrus clementina HOM05D003670 ORTHO05D004767 1.4e-172 609.8 373 80.2
TWI39G0091 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 3.2e-172 608.6 378 80.2
FvH4_3g14990 Fragaria vesca HOM05D003670 ORTHO05D004767 7.1e-172 607.4 377 78.0
TWI38G1711 Tripterygium wilfordii HOM05D003670 ORTHO05D004767 9.3e-172 607.1 377 80.6
FAN11G2825 Fragaria x ananassa HOM05D003670 ORTHO05D004767 1.2e-171 606.7 377 78.0
Eucgr.F04458 Eucalyptus grandis HOM05D003670 ORTHO05D004767 3.5e-171 605.1 379 78.1
Lalb_Chr25g0284691 Lupinus albus HOM05D003670 ORTHO05D004767 7.9e-171 604.0 379 78.9
TPR.G33813 Trifolium pratense HOM05D003670 ORTHO05D004767 7.9e-171 604.0 377 78.2
RcHm_v2.0_Chr5g0024611 Rosa chinensis HOM05D003670 ORTHO05D004767 1.3e-170 603.2 377 78.5
FAN21G1395 Fragaria x ananassa HOM05D003670 ORTHO05D004767 5.1e-170 601.3 377 77.2
MBI02_g18168_MAGBIO Magnolia biondii HOM05D003670 ORTHO05D004767 2.5e-169 599.0 376 78.5
Nitab4.5_0006241g0010 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.8e-168 595.5 377 76.1
FAN25G1710 Fragaria x ananassa HOM05D003670 ORTHO05D004767 4.8e-168 594.7 391 74.9
Medtr2g067080 Medicago truncatula HOM05D003670 ORTHO05D004767 6.3e-168 594.3 378 77.5
Psat1g013760 Pisum sativum HOM05D003670 ORTHO05D004767 6.3e-168 594.3 376 76.9
Peaxi162Scf00452g00333 Petunia axillaris HOM05D003670 ORTHO05D004767 1.1e-167 593.6 377 75.6
TAR583G0001 Trochodendron aralioides HOM05D003670 ORTHO05D004767 1.8e-167 592.8 373 76.9
VMungo1080G1660 Vigna mungo HOM05D003670 ORTHO05D004767 1.8e-167 592.8 372 79.3
HanXRQChr11g0335601 Helianthus annuus HOM05D003670 ORTHO05D004767 5.3e-167 591.3 377 76.7
Cc05_g16310 Coffea canephora HOM05D003670 ORTHO05D004767 6.9e-167 590.9 379 75.7
Lsat_1_v5_gn_7_110680 Lactuca sativa HOM05D003670 ORTHO05D004767 6.9e-167 590.9 377 76.9
Cfa022976 Carpinus fangiana HOM05D003670 ORTHO05D004767 9.0e-167 590.5 378 77.8
CANSAT80G2697 Cannabis sativa HOM05D003670 ORTHO05D004767 1.5e-166 589.7 378 75.9
COL.COLO4_32264 Corchorus olitorius HOM05D003670 ORTHO05D004767 2.6e-166 589.0 342 81.0
Nitab4.5_0000029g0340 Nicotiana tabacum HOM05D003670 ORTHO05D004767 2.2e-165 585.9 377 75.9
CAN.G943.51 Capsicum annuum HOM05D003670 ORTHO05D004767 5.0e-165 584.7 378 76.2
Ca_03600_v3 Cicer arietinum L. HOM05D003670 ORTHO05D004767 1.4e-164 583.2 378 76.2
Sopen07g034740 Solanum pennellii HOM05D003670 ORTHO05D004767 1.4e-164 583.2 375 77.1
PGSC0003DMG400022232 Solanum tuberosum HOM05D003670 ORTHO05D004767 1.4e-164 583.2 377 76.9
Migut.H01671 Erythranthe guttata HOM05D003670 ORTHO05D004767 2.5e-164 582.4 381 75.6
Sabra05G0078800 Salix brachista HOM05D003670 ORTHO05D004767 4.2e-164 581.6 344 82.0
PSO541G1524 Papaver somniferum HOM05D003670 ORTHO05D004767 1.2e-163 580.1 378 74.1
CsaV3_3G018980 Cucumis sativus L. HOM05D003670 ORTHO05D004767 1.6e-163 579.7 377 73.5
PSO675G6901 Papaver somniferum HOM05D003670 ORTHO05D004767 1.6e-163 579.7 378 74.1
Solyc07g066580.3 Solanum lycopersicum HOM05D003670 ORTHO05D004767 2.7e-163 578.9 374 76.7
Potri.005G095300 Populus trichocarpa HOM05D003670 ORTHO05D004767 1.3e-162 576.6 303 90.1
AUR62037644 Chenopodium quinoa HOM05D003670 ORTHO05D004767 1.8e-162 576.2 379 73.1
Sp5g34280 Schrenkiella parvula HOM05D003670 ORTHO05D004767 2.3e-162 575.9 377 73.7
AL2G39700 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 3.0e-162 575.5 378 72.8
Nitab4.5_0005765g0040 Nicotiana tabacum HOM05D003670 ORTHO05D004767 3.0e-162 575.5 377 74.5
Thhalv10018699m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 3.9e-162 575.1 379 73.1
Duzib187G0441 Durio zibethinus HOM05D003670 ORTHO05D004767 1.5e-161 573.2 313 85.0
Aqoxy1G01484 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 3.3e-161 572.0 376 73.7
Sed0012107 Sechium edule HOM05D003670 ORTHO05D004767 3.3e-161 572.0 377 72.7
Aa31LG4G1790 Aethionema arabicum HOM05D003670 ORTHO05D004767 9.7e-161 570.5 370 74.1
AT1G79230 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 2.8e-160 568.9 378 72.5
ECA236G3562 Erigeron canadensis HOM05D003670 ORTHO05D004767 2.8e-160 568.9 314 84.4
EL10Ac2g03264 Beta vulgaris HOM05D003670 ORTHO05D004767 6.3e-160 567.8 378 72.2
Carub.0002s2610 Capsella rubella HOM05D003670 ORTHO05D004767 1.1e-159 567.0 380 72.6
AUR62039184 Chenopodium quinoa HOM05D003670 ORTHO05D004767 3.1e-159 565.5 379 71.2
ATR0763G120 Amborella trichopoda HOM05D003670 ORTHO05D004767 5.3e-159 564.7 380 72.6
Glyma.15G260300 Glycine max HOM05D003670 ORTHO05D004767 5.3e-159 564.7 349 80.2
MSTRG.14566 Avicennia marina HOM05D003670 ORTHO05D004767 1.2e-158 563.5 379 73.4
CARHR016930 Cardamine hirsuta HOM05D003670 ORTHO05D004767 1.2e-158 563.5 378 71.4
Peaxi162Scf00006g00159 Petunia axillaris HOM05D003670 ORTHO05D004767 1.5e-158 563.1 378 73.0
Nn7g37780 Nelumbo nucifera HOM05D003670 ORTHO05D004767 3.4e-158 562.0 315 84.1
THA.LOC104812362 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 7.7e-158 560.8 378 71.2
Ah.10g033690 Amaranthus hybridus HOM05D003670 ORTHO05D004767 1.3e-157 560.1 343 77.3
Oeu002796.1 Olea europaea HOM05D003670 ORTHO05D004767 1.7e-157 559.7 333 79.3
BcaB02g07206 Brassica carinata HOM05D003670 ORTHO05D004767 3.8e-157 558.5 375 72.0
A07p27230 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-156 556.6 375 72.0
BraA07t30367Z Brassica rapa HOM05D003670 ORTHO05D004767 1.4e-156 556.6 375 72.0
CARHR072860 Cardamine hirsuta HOM05D003670 ORTHO05D004767 2.5e-156 555.8 311 81.4
vmacro11699 Vaccinium macrocarpon HOM05D003670 ORTHO05D004767 2.5e-156 555.8 363 75.5
BcaC08g45368 Brassica carinata HOM05D003670 ORTHO05D004767 5.5e-156 554.7 375 72.3
C06p30000 Brassica napus HOM05D003670 ORTHO05D004767 5.5e-156 554.7 375 72.3
BolC6t38160H Brassica oleracea HOM05D003670 ORTHO05D004767 5.5e-156 554.7 375 72.0
Carub.0001s1620 Capsella rubella HOM05D003670 ORTHO05D004767 6.1e-155 551.2 380 70.3
THA.LOC104813608 Tarenaya hassleriana HOM05D003670 ORTHO05D004767 6.1e-155 551.2 379 69.9
Duzib213G1009 Durio zibethinus HOM05D003670 ORTHO05D004767 3.9e-154 548.5 383 72.3
BraA07t31943Z Brassica rapa HOM05D003670 ORTHO05D004767 2.6e-153 545.8 377 69.2
A07p44350 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-152 543.1 364 71.2
BcaB05g25180 Brassica carinata HOM05D003670 ORTHO05D004767 1.4e-151 540.0 313 80.8
Solyc02g078990.4 Solanum lycopersicum HOM05D003670 ORTHO05D004767 1.4e-151 540.0 314 79.6
BolC5t30186H Brassica oleracea HOM05D003670 ORTHO05D004767 1.8e-151 539.7 380 68.2
Thhalv10007910m.g Eutrema salsugineum HOM05D003670 ORTHO05D004767 2.4e-151 539.3 313 79.2
Sopen02g023800 Solanum pennellii HOM05D003670 ORTHO05D004767 2.4e-151 539.3 314 80.3
BcaC05g25571 Brassica carinata HOM05D003670 ORTHO05D004767 6.9e-151 537.7 380 68.2
C05p14650 Brassica napus HOM05D003670 ORTHO05D004767 1.5e-150 536.6 380 67.9
unitig_578.g16333 Utricularia gibba HOM05D003670 ORTHO05D004767 2.6e-150 535.8 342 71.6
HPP92_013192 Vanilla planifolia HOM05D003670 ORTHO05D004767 3.4e-150 535.4 378 68.8
arahy.Tifrunner.gnm1.ann1.36F1KB Arachis hypogaea HOM05D003670 ORTHO05D004767 1.0e-149 533.9 348 75.9
BcaB02g06624 Brassica carinata HOM05D003670 ORTHO05D004767 3.8e-149 531.9 380 69.2
BraA06t24401Z Brassica rapa HOM05D003670 ORTHO05D004767 2.5e-148 529.3 381 68.0
Hund20101 Selenicereus undatus HOM05D003670 ORTHO05D004767 3.2e-148 528.9 377 69.5
Zm00001eb031400 Zea mays HOM05D003670 ORTHO05D004767 5.5e-148 528.1 295 82.0
AL1G28600 Arabidopsis lyrata HOM05D003670 ORTHO05D004767 2.7e-147 525.8 312 78.2
Os12g0608600 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 3.6e-147 525.4 303 79.9
A06p12380 Brassica napus HOM05D003670 ORTHO05D004767 8.8e-146 520.8 376 66.2
DCAR_019919 Daucus carota HOM05D003670 ORTHO05D004767 3.3e-145 518.8 376 69.4
Sp1g14610 Schrenkiella parvula HOM05D003670 ORTHO05D004767 4.4e-145 518.5 315 75.2
arahy.Tifrunner.gnm1.ann1.YZ7E83 Arachis hypogaea HOM05D003670 ORTHO05D004767 1.3e-144 516.9 348 74.7
Aa31LG7G1000 Aethionema arabicum HOM05D003670 ORTHO05D004767 1.1e-143 513.8 312 75.3
ClCG05G009800 Citrullus lanatus HOM05D003670 ORTHO05D000003 2.4e-143 512.7 378 67.2
Sc06g0002800 Simmondsia chinensis HOM05D003670 ORTHO05D004767 2.6e-142 509.2 345 73.9
AT1G16460 Arabidopsis thaliana HOM05D003670 ORTHO05D004767 4.5e-142 508.4 312 76.0
Oeu043724.2 Olea europaea HOM05D003670 ORTHO05D004767 2.2e-141 506.1 318 74.2
SGA_v2.0_scaffold186G40197 Striga asiatica HOM05D003670 ORTHO05D004767 3.2e-140 502.3 304 74.3
MSTRG.7076 Avicennia marina HOM05D003670 ORTHO05D004767 9.4e-140 500.7 322 72.0
Lj2A15G76 Lonicera japonica HOM05D003670 ORTHO05D004767 4.4e-137 491.9 348 72.1
Nitab4.5_0000388g0140 Nicotiana tabacum HOM05D003670 ORTHO05D004767 1.3e-136 490.3 323 74.9
unitig_8.g4750 Utricularia gibba HOM05D003670 ORTHO05D004767 6.3e-136 488.0 373 64.6
MELO3C019489.2 Cucumis melo HOM05D003670 ORTHO05D004767 3.5e-134 482.3 324 71.6
SEGI_21826 Sequoiadendron giganteum HOM05D003670 ORTHO05D004767 1.0e-133 480.7 306 72.5
Haze_07818 Corylus avellana HOM05D003670 ORTHO05D004767 7.5e-129 464.5 324 73.8
C06p53140 Brassica napus HOM05D003670 ORTHO05D004767 1.7e-128 463.4 257 83.3
BolC6t40330H Brassica oleracea HOM05D003670 ORTHO05D004767 1.7e-128 463.4 331 68.9
DCAR_016837 Daucus carota HOM05D003670 ORTHO05D004767 4.1e-127 458.8 293 70.3
BcaC08g47490 Brassica carinata HOM05D003670 ORTHO05D004767 2.0e-126 456.4 380 61.6
QL04p088965 Quercus lobata HOM05D003670 ORTHO05D004767 7.7e-126 454.5 241 89.6
Os02g0167100 Oryza sativa ssp. japonica HOM05D003670 ORTHO05D004767 5.2e-122 441.8 296 65.2
Mapoly0058s0078 Marchantia polymorpha HOM05D003670 ORTHO05D004767 4.9e-120 435.3 319 62.7
SGA_v2.0_scaffold49G18190 Striga asiatica HOM05D003670 ORTHO05D004767 9.2e-119 431.0 278 74.5
AagrBONN_evm.TU.Sc2ySwM_344.5346 Anthoceros agrestis HOM05D003670 ORTHO05D004767 6.6e-117 424.9 302 65.9
Dinv19592 Davidia involucrata HOM05D003670 ORTHO05D004767 3.4e-113 412.5 261 77.8
Zm00001eb207410 Zea mays HOM05D003670 ORTHO05D004767 2.0e-110 403.3 323 58.2
Rhsim05G0210500 Rhododendron simsii HOM05D003670 ORTHO05D004767 3.0e-109 399.4 246 79.7
Pp3c9_17670 Physcomitrium patens HOM05D003670 ORTHO05D004767 8.6e-109 397.9 318 57.2
HPP92_013209 Vanilla planifolia HOM05D003670 ORTHO05D004767 8.9e-106 387.9 378 55.0
CDE06G2006 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 1.5e-105 387.1 233 75.1
SMO119G0061 Selaginella moellendorffii HOM05D003670 ORTHO05D004767 7.5e-105 384.8 293 62.1
Actinidia12766 Actinidia chinensis HOM05D003670 ORTHO05D004767 2.0e-102 376.7 232 80.2
FAN16G2550 Fragaria x ananassa HOM05D003670 ORTHO05D004767 6.4e-96 355.1 196 84.7
MD05G1228700 Malus domestica HOM05D003670 ORTHO05D004767 2.1e-94 350.1 196 83.7
CDE02G0962 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 2.3e-93 346.7 297 59.3
Cpa.g.sc34.17 Carica papaya HOM05D003670 ORTHO05D004767 4.3e-92 342.4 211 78.7
RcHm_v2.0_Chr5g0024731 Rosa chinensis HOM05D003670 ORTHO05D004767 1.6e-78 297.4 214 72.0
A02p22680 Brassica napus HOM05D003670 ORTHO05D004767 4.8e-75 285.8 328 48.2
CBR_g17038 Chara braunii HOM05D003670 ORTHO05D004767 4.9e-72 275.8 344 43.3
C02p36310 Brassica napus HOM05D003670 ORTHO05D004767 1.4e-71 274.2 219 64.4
Cre13.g607050 Chlamydomonas reinhardtii HOM05D003670 ORTHO05D004767 1.3e-67 261.2 301 45.5
MCO09G588 Micromonas commoda HOM05D003670 ORTHO05D004767 3.1e-66 256.5 299 46.8
PRCOL_00006295 Prasinoderma coloniale HOM05D003670 ORTHO05D004767 3.8e-64 249.6 304 43.4
MD05G1228600 Malus domestica HOM05D003670 ORTHO05D004767 1.8e-53 214.2 181 63.0
Hma1.2p1_0269F.1_g107810 Hydrangea macrophylla HOM05D003670 ORTHO05D004767 6.7e-53 212.2 153 71.2
Aqoxy1G03000 Aquilegia oxysepala HOM05D003670 ORTHO05D004767 4.3e-52 209.5 114 82.5
Cfa026738 Carpinus fangiana HOM05D003670 ORTHO05D004767 2.8e-43 180.3 289 38.4
BolC1t01654H Brassica oleracea HOM05D003670 ORTHO05D004767 5.5e-39 166.0 131 68.7
C03p82980 Brassica napus HOM05D003670 ORTHO05D004767 1.6e-38 164.5 94 87.2
BcaC01g00674 Brassica carinata HOM05D003670 ORTHO05D004767 3.6e-38 163.3 92 88.0
C01p17180 Brassica napus HOM05D003670 ORTHO05D004767 1.8e-37 161.0 131 67.2
BcaC04g18607 Brassica carinata HOM05D003670 ORTHO05D004767 3.9e-37 159.8 92 85.9
CAN.G891.1 Capsicum annuum HOM05D003670 ORTHO05D004767 6.7e-37 159.1 94 84.0
BolC9t58925H Brassica oleracea HOM05D003670 ORTHO05D004767 8.8e-37 158.7 140 62.1
Oeu010650.2 Olea europaea HOM05D003670 ORTHO05D004767 1.1e-31 141.7 97 76.3
Cpa.g.sc34.16 Carica papaya HOM05D003670 ORTHO05D004767 6.1e-30 136.0 75 82.7
Lsat_1_v5_gn_4_93521 Lactuca sativa HOM05D003670 ORTHO05D004767 7.4e-28 129.0 66 89.4
Mapoly0032s0014 Marchantia polymorpha HOM05D003670 ORTHO05D031137 9.7e-28 128.6 359 28.4
Oeu034061.1 Olea europaea HOM05D003670 ORTHO05D020012 1.1e-26 125.2 74 77.0
QL04p088979 Quercus lobata HOM05D003670 ORTHO05D004767 1.6e-25 121.3 99 63.6
BolC7t42971H Brassica oleracea HOM05D003670 ORTHO05D004767 3.5e-25 120.2 133 53.4
BcaC06g34801 Brassica carinata HOM05D003670 ORTHO05D004767 1.0e-24 118.6 92 70.7
Solyc06g009850.3 Solanum lycopersicum HOM05D003670 ORTHO05D014971 2.7e-22 110.5 111 54.1
CDE06G0877 Ceratophyllum demersum HOM05D003670 ORTHO05D004767 6.7e-21 105.9 64 75.0
BcaC03g15876 Brassica carinata HOM05D003670 ORTHO05D020012 1.8e-18 97.8 62 69.4
BcaC05g28269 Brassica carinata HOM05D003670 ORTHO05D014971 1.9e-15 87.8 51 76.5
AagrBONN_evm.TU.Sc2ySwM_117.2139 Anthoceros agrestis HOM05D003670 ORTHO05D031137 2.5e-15 87.4 242 30.2
Sopen06g004510 Solanum pennellii HOM05D003670 ORTHO05D014971 3.0e-13 80.5 45 84.4
BcaC02g07679 Brassica carinata HOM05D003670 ORTHO05D014971 7.5e-12 75.9 41 82.9
Solyc06g009860.1 Solanum lycopersicum HOM05D003670 ORTHO05D020012 2.7e-09 67.4 46 65.2
Lsat_1_v5_gn_8_160501 Lactuca sativa HOM05D003670 ORTHO05D002209 6.6e-08 62.8 33 90.9
Hma1.2p1_1039F.1_g250810 Hydrangea macrophylla HOM05D001854 ORTHO05D001800 1.5e-07 61.6 35 74.3
C06p40160 Brassica napus HOM05D003670 ORTHO05D020012 3.3e-07 60.5 30 83.3
BolC6t39098H Brassica oleracea HOM05D003670 ORTHO05D020012 3.3e-07 60.5 30 83.3


User provided reference genes

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