Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G064500 Populus trichocarpa HOM05D004986 ORTHO05D005898 1.2e-194 682.9 337 100.0
Sabra02G0136200 Salix brachista HOM05D004986 ORTHO05D005898 1.7e-119 433.3 388 62.9
Manes.01G157000 Manihot esculenta HOM05D004986 ORTHO05D005898 3.6e-106 389.0 377 55.4
QL11p035166 Quercus lobata HOM05D004986 ORTHO05D005898 1.7e-100 370.2 381 52.8
Manes.02G115500 Manihot esculenta HOM05D004986 ORTHO05D005898 2.3e-100 369.8 377 52.8
Potri.002G177100 Populus trichocarpa HOM05D004986 ORTHO05D005898 3.9e-100 369.0 288 69.1
Cfa007104 Carpinus fangiana HOM05D004986 ORTHO05D005898 3.6e-98 362.5 379 52.0
Atru.chr10.1831 Acer truncatum HOM05D004986 ORTHO05D005898 7.5e-96 354.8 382 53.7
Atru.chr10.1816 Acer truncatum HOM05D004986 ORTHO05D005898 2.2e-95 353.2 381 53.3
Hma1.2p1_0085F.1_g044450 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 2.4e-94 349.7 381 52.0
CiPaw.07G000800 Carya illinoinensis HOM05D004986 ORTHO05D005898 5.4e-94 348.6 373 52.5
Ciclev10025602m.g Citrus clementina HOM05D004986 ORTHO05D005898 7.1e-94 348.2 381 51.7
Dinv28304 Davidia involucrata HOM05D004986 ORTHO05D005898 3.5e-93 345.9 375 52.3
Prupe.7G185600 Prunus persica HOM05D004986 ORTHO05D005898 6.0e-93 345.1 389 50.6
Actinidia32993 Actinidia chinensis HOM05D004986 ORTHO05D005898 1.0e-92 344.4 389 51.7
CSS0007723 Camellia sinensis var. sinensis HOM05D004986 ORTHO05D005898 1.7e-92 343.6 387 51.4
Haze_03636 Corylus avellana HOM05D004986 ORTHO05D005898 1.1e-91 340.9 421 47.5
GSVIVG01022308001 Vitis vinifera HOM05D004986 ORTHO05D005898 2.8e-90 336.3 377 50.1
PGR119G1257 Punica granatum HOM05D004986 ORTHO05D005898 4.7e-90 335.5 387 50.1
TWI53G0851 Tripterygium wilfordii HOM05D004986 ORTHO05D005898 4.7e-90 335.5 372 51.3
Rhsim10G0191900 Rhododendron simsii HOM05D004986 ORTHO05D005898 1.4e-89 334.0 387 48.8
Cpa.g.sc91.49 Carica papaya HOM05D004986 ORTHO05D005898 3.1e-89 332.8 388 49.5
Ca_02840_v3 Cicer arietinum L. HOM05D004986 ORTHO05D005898 4.0e-89 332.4 388 48.2
Lj3g0020964 Lotus japonicus HOM05D004986 ORTHO05D005898 6.8e-89 331.6 378 49.5
TAR381G0383 Trochodendron aralioides HOM05D004986 ORTHO05D005898 3.4e-88 329.3 371 49.1
Actinidia22885 Actinidia chinensis HOM05D004986 ORTHO05D005898 4.4e-88 328.9 389 50.6
arahy.Tifrunner.gnm1.ann1.H550X0 Arachis hypogaea HOM05D004986 ORTHO05D005898 2.2e-87 326.6 372 48.9
Lalb_Chr05g0214931 Lupinus albus HOM05D004986 ORTHO05D005898 6.4e-87 325.1 386 49.7
Thecc.01G002600 Theobroma cacao HOM05D004986 ORTHO05D005898 1.1e-86 324.3 374 48.9
arahy.Tifrunner.gnm1.ann1.UZ6AL0 Arachis hypogaea HOM05D004986 ORTHO05D005898 1.9e-86 323.6 395 46.3
RcHm_v2.0_Chr2g0096901 Rosa chinensis HOM05D004986 ORTHO05D005898 3.2e-86 322.8 386 47.9
DCAR_024399 Daucus carota HOM05D004986 ORTHO05D005898 5.4e-86 322.0 375 48.3
Nitab4.5_0004269g0070 Nicotiana tabacum HOM05D004986 ORTHO05D005898 5.4e-86 322.0 375 48.5
Cc07_g12070 Coffea canephora HOM05D004986 ORTHO05D005898 7.1e-86 321.6 375 48.3
MD15G1228500 Malus domestica HOM05D004986 ORTHO05D005898 2.1e-85 320.1 391 46.5
Medtr8g073110 Medicago truncatula HOM05D004986 ORTHO05D005898 2.1e-85 320.1 380 47.4
Psat4g105800 Pisum sativum HOM05D004986 ORTHO05D005898 2.1e-85 320.1 377 48.3
FvH4_1g10130 Fragaria vesca HOM05D004986 ORTHO05D005898 6.0e-85 318.5 378 49.7
Peaxi162Scf00920g00114 Petunia axillaris HOM05D004986 ORTHO05D005898 1.3e-84 317.4 382 47.1
FAN23G1121 Fragaria x ananassa HOM05D004986 ORTHO05D005898 1.7e-84 317.0 378 49.5
Duzib106G1274 Durio zibethinus HOM05D004986 ORTHO05D005898 2.3e-84 316.6 374 47.1
Phvul.010G020700 Phaseolus vulgaris HOM05D004986 ORTHO05D005898 3.9e-84 315.8 376 47.3
CANSAT21G0416 Cannabis sativa HOM05D004986 ORTHO05D005898 1.1e-83 314.3 372 48.7
CAN.G647.4 Capsicum annuum HOM05D004986 ORTHO05D005898 1.1e-83 314.3 381 47.0
Nitab4.5_0000495g0010 Nicotiana tabacum HOM05D004986 ORTHO05D005898 1.1e-83 314.3 375 47.2
FAN19G1207 Fragaria x ananassa HOM05D004986 ORTHO05D005898 2.5e-83 313.2 378 49.2
FAN26G2552 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.3e-83 311.6 383 48.6
FAN28G2129 Fragaria x ananassa HOM05D004986 ORTHO05D005898 7.3e-83 311.6 383 48.6
Glyma.09G196600 Glycine max HOM05D004986 ORTHO05D005898 2.1e-82 310.1 376 46.8
Migut.B01487 Erythranthe guttata HOM05D004986 ORTHO05D005898 2.8e-82 309.7 369 48.2
Eucgr.I02210 Eucalyptus grandis HOM05D004986 ORTHO05D005898 4.7e-82 308.9 380 47.9
FAN23G2177 Fragaria x ananassa HOM05D004986 ORTHO05D005898 4.7e-82 308.9 383 48.8
Solyc03g032050.4 Solanum lycopersicum HOM05D004986 ORTHO05D005898 6.2e-82 308.5 375 48.0
Sopen03g005900 Solanum pennellii HOM05D004986 ORTHO05D005898 6.2e-82 308.5 377 48.0
PGSC0003DMG400018667 Solanum tuberosum HOM05D004986 ORTHO05D005898 8.1e-82 308.1 385 46.8
PSO170G5246 Papaver somniferum HOM05D004986 ORTHO05D005898 1.4e-81 307.4 381 47.8
TAR628G0962 Trochodendron aralioides HOM05D004986 ORTHO05D005898 1.4e-81 307.4 384 47.9
VMungo0331G1669 Vigna mungo HOM05D004986 ORTHO05D005898 2.4e-81 306.6 376 46.0
Glyma.16G112300 Glycine max HOM05D004986 ORTHO05D005898 3.1e-81 306.2 375 45.9
Oeu002901.1 Olea europaea HOM05D004986 ORTHO05D005898 8.9e-81 304.7 382 46.3
Gorai.005G068600 Gossypium raimondii HOM05D004986 ORTHO05D005898 9.9e-80 301.2 391 45.3
HanXRQChr10g0316221 Helianthus annuus HOM05D004986 ORTHO05D005898 2.9e-79 299.7 354 47.2
vmacro20612 Vaccinium macrocarpon HOM05D004986 ORTHO05D005898 2.9e-79 299.7 390 45.1
Carub.0008s2856 Capsella rubella HOM05D004986 ORTHO05D005898 3.8e-79 299.3 366 46.4
Aqoxy6G01559 Aquilegia oxysepala HOM05D004986 ORTHO05D005898 4.9e-79 298.9 381 47.2
Sp2g30730 Schrenkiella parvula HOM05D004986 ORTHO05D005898 1.9e-78 297.0 366 48.4
ECA240G4103 Erigeron canadensis HOM05D004986 ORTHO05D005898 2.4e-78 296.6 355 47.9
Thhalv10004346m.g Eutrema salsugineum HOM05D004986 ORTHO05D005898 2.4e-78 296.6 374 46.3
Aa31LG1G14460 Aethionema arabicum HOM05D004986 ORTHO05D005898 4.2e-78 295.8 361 46.8
Gohir.A02G055800 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.2e-78 295.8 391 44.8
Gohir.D02G061000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 4.2e-78 295.8 391 44.8
SalBow5G3763 Salvia bowleyana HOM05D004986 ORTHO05D005898 4.2e-78 295.8 377 45.9
MSTRG.17107 Avicennia marina HOM05D004986 ORTHO05D005898 9.3e-78 294.7 378 43.7
CsaV3_4G027660 Cucumis sativus L. HOM05D004986 ORTHO05D005898 9.3e-78 294.7 368 47.0
Hund21384 Selenicereus undatus HOM05D004986 ORTHO05D005898 1.2e-77 294.3 367 45.8
Gohir.D03G000700 Gossypium hirsutum HOM05D004986 ORTHO05D005898 2.7e-77 293.1 376 45.7
EL10Ac3g05234 Beta vulgaris HOM05D004986 ORTHO05D005898 3.5e-77 292.7 372 46.0
ClCG04G005010 Citrullus lanatus HOM05D004986 ORTHO05D005898 7.8e-77 291.6 367 47.1
Gorai.003G001100 Gossypium raimondii HOM05D004986 ORTHO05D005898 3.0e-76 289.7 376 44.7
Sed0027663 Sechium edule HOM05D004986 ORTHO05D005898 3.0e-76 289.7 366 46.4
AUR62006055 Chenopodium quinoa HOM05D004986 ORTHO05D005898 3.9e-76 289.3 345 47.2
Gohir.A02G179000 Gossypium hirsutum HOM05D004986 ORTHO05D005898 3.9e-76 289.3 399 43.9
MELO3C026343.2 Cucumis melo HOM05D004986 ORTHO05D005898 6.6e-76 288.5 368 46.5
AT5G65960 Arabidopsis thaliana HOM05D004986 ORTHO05D005898 8.7e-76 288.1 366 46.2
Lj2C503G0 Lonicera japonica HOM05D004986 ORTHO05D005898 8.7e-76 288.1 349 48.4
Nn5g31026 Nelumbo nucifera HOM05D004986 ORTHO05D005898 8.7e-76 288.1 432 41.9
AL8G45680 Arabidopsis lyrata HOM05D004986 ORTHO05D005898 1.6e-74 283.9 366 45.1
THA.LOC104826450 Tarenaya hassleriana HOM05D004986 ORTHO05D005898 6.2e-74 282.0 348 46.0
Lsat_1_v5_gn_2_73561 Lactuca sativa HOM05D004986 ORTHO05D005898 9.0e-73 278.1 364 45.1
Ah.10g026930 Amaranthus hybridus HOM05D004986 ORTHO05D005898 7.1e-70 268.5 379 42.0
SGA_v2.0_scaffold52G19267 Striga asiatica HOM05D004986 ORTHO05D005898 2.1e-69 266.9 341 44.6
Hma1.2p1_0085F.1_g044460 Hydrangea macrophylla HOM05D004986 ORTHO05D005898 4.6e-69 265.8 288 51.4
CARHR257450 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.0e-68 264.6 364 44.0
A09p10240 Brassica napus HOM05D004986 ORTHO05D005898 1.6e-66 257.3 359 42.9
Psat0s3210g0040 Pisum sativum HOM05D004986 ORTHO05D005898 1.6e-66 257.3 285 49.1
SGA_v2.0_scaffold34G13577 Striga asiatica HOM05D004986 ORTHO05D005898 8.1e-66 255.0 402 40.5
BolC9t54105H Brassica oleracea HOM05D004986 ORTHO05D005898 1.8e-65 253.8 378 42.6
C09p12150 Brassica napus HOM05D004986 ORTHO05D005898 9.0e-65 251.5 370 41.9
BcaC04g23101 Brassica carinata HOM05D004986 ORTHO05D005898 2.6e-64 250.0 376 42.3
Os04g0584800 Oryza sativa ssp. japonica HOM05D004986 ORTHO05D005898 4.5e-64 249.2 386 39.4
HPP92_007280 Vanilla planifolia HOM05D004986 ORTHO05D005898 9.9e-64 248.1 392 40.6
MBI13_g20494_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.2e-63 246.9 242 53.3
BcaB04g20132 Brassica carinata HOM05D004986 ORTHO05D005898 3.8e-63 246.1 368 42.1
BraA09t36669Z Brassica rapa HOM05D004986 ORTHO05D005898 3.8e-63 246.1 368 41.0
unitig_26.g8860 Utricularia gibba HOM05D004986 ORTHO05D005898 2.4e-62 243.4 365 42.5
Zm00001eb072790 Zea mays HOM05D004986 ORTHO05D005898 5.5e-62 242.3 386 38.1
Atru.chr3.37 Acer truncatum HOM05D004986 ORTHO05D005898 3.3e-59 233.0 364 43.1
CARHR281810 Cardamine hirsuta HOM05D004986 ORTHO05D005898 1.6e-58 230.7 224 53.6
ATR0807G113 Amborella trichopoda HOM05D004986 ORTHO05D005898 1.6e-53 214.2 435 35.9
Lj4g0017944 Lotus japonicus HOM05D004986 ORTHO05D005898 3.9e-52 209.5 342 40.9
SEGI_13138 Sequoiadendron giganteum HOM05D004986 ORTHO05D005898 5.7e-51 205.7 379 36.1
COL.COLO4_34271 Corchorus olitorius HOM05D004986 ORTHO05D005898 7.4e-51 205.3 371 36.4
Sc05g0009010 Simmondsia chinensis HOM05D004986 ORTHO05D005898 7.4e-51 205.3 321 40.8
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 2.1e-50 203.8 364 38.5
Dinv40206 Davidia involucrata HOM05D004986 ORTHO05D005898 2.2e-47 193.7 227 51.1
CDE04G0629 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.4e-46 191.0 358 38.0
Mapoly0024s0125 Marchantia polymorpha HOM05D004986 ORTHO05D005898 1.8e-44 184.1 262 41.6
HanXRQChr13g0388301 Helianthus annuus HOM05D004986 ORTHO05D005898 2.4e-41 173.7 184 49.5
SMO147G0325 Selaginella moellendorffii HOM05D004986 ORTHO05D005898 4.5e-40 169.5 373 33.2
CDE07G1230 Ceratophyllum demersum HOM05D004986 ORTHO05D005898 1.9e-38 164.1 201 43.3
MD02G1112100 Malus domestica HOM05D004986 ORTHO05D005898 2.5e-38 163.7 155 49.0
AagrBONN_evm.TU.Sc2ySwM_362.836 Anthoceros agrestis HOM05D004986 ORTHO05D005898 1.2e-37 161.4 264 38.6
Pp3c17_5460 Physcomitrium patens HOM05D004986 ORTHO05D005898 2.8e-34 150.2 234 38.9
AUR62035574 Chenopodium quinoa HOM05D004986 ORTHO05D005898 1.8e-33 147.5 168 46.4
MD02G1113000 Malus domestica HOM05D004986 ORTHO05D005898 2.4e-33 147.1 155 46.5
MD02G1109300 Malus domestica HOM05D004986 ORTHO05D005898 1.1e-30 138.3 174 44.3
TPR.G33051 Trifolium pratense HOM05D004986 ORTHO05D005898 2.6e-27 127.1 95 63.2
HanXRQChr13g0388311 Helianthus annuus HOM05D004986 ORTHO05D005898 3.3e-27 126.7 184 41.8
Atru.chr3.33 Acer truncatum HOM05D004986 ORTHO05D005898 5.7e-27 125.9 112 56.2
Sed0024004 Sechium edule HOM05D004986 ORTHO05D005898 6.5e-23 112.5 279 33.7
MD02G1113100 Malus domestica HOM05D004986 ORTHO05D005898 6.7e-20 102.4 143 46.2
Atru.chr3.32 Acer truncatum HOM05D004986 ORTHO05D005898 2.8e-18 97.1 141 44.7
CBR_g24177 Chara braunii HOM05D004986 ORTHO05D005898 7.0e-17 92.4 255 28.2
MD02G1112600 Malus domestica HOM05D004986 ORTHO05D005898 1.2e-16 91.7 147 38.1
SGA_v2.0_scaffold578G53029 Striga asiatica HOM05D004986 ORTHO05D005898 7.7e-16 89.0 157 36.9
MD02G1112300 Malus domestica HOM05D004986 ORTHO05D005898 3.0e-12 77.0 99 41.4
MBI15_g18235_MAGBIO Magnolia biondii HOM05D004986 ORTHO05D005898 2.7e-08 63.9 76 40.8
arahy.Tifrunner.gnm1.ann1.864E1P Arachis hypogaea HOM05D004986 ORTHO05D005898 3.8e-07 60.1 109 42.2
arahy.Tifrunner.gnm1.ann1.GJAM3K Arachis hypogaea HOM05D004986 ORTHO05D005898 3.8e-07 60.1 109 42.2


User provided reference genes

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