Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G063000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.8e-194 682.6 391 100.0
Potri.005G102000 Populus trichocarpa HOM05D004420 ORTHO05D005048 1.0e-157 560.5 391 82.4
Sabra05G0084400 Salix brachista HOM05D004420 ORTHO05D005048 2.0e-153 546.2 391 79.0
Manes.01G155700 Manihot esculenta HOM05D004420 ORTHO05D005048 2.1e-137 493.0 403 74.7
Manes.02G114400 Manihot esculenta HOM05D004420 ORTHO05D005048 1.3e-123 447.2 399 66.9
Prupe.7G183600 Prunus persica HOM05D004420 ORTHO05D005048 2.0e-108 396.7 391 62.7
FAN19G0089 Fragaria x ananassa HOM05D004420 ORTHO05D005048 1.9e-106 390.2 391 60.6
FvH4_1g10260 Fragaria vesca HOM05D004420 ORTHO05D005048 5.5e-106 388.7 391 60.4
Sabra07G0052400 Salix brachista HOM05D004420 ORTHO05D005048 9.3e-106 387.9 336 72.0
FAN26G2737 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.1e-105 386.7 391 60.1
RcHm_v2.0_Chr2g0097081 Rosa chinensis HOM05D004420 ORTHO05D005048 7.9e-105 384.8 393 61.1
Thecc.01G004900 Theobroma cacao HOM05D004420 ORTHO05D005048 1.3e-104 384.0 391 63.2
Cfa007085 Carpinus fangiana HOM05D004420 ORTHO05D005048 3.3e-103 379.4 397 63.0
Duzib147G0341 Durio zibethinus HOM05D004420 ORTHO05D005048 3.3e-103 379.4 385 60.8
CiPaw.08G182000 Carya illinoinensis HOM05D004420 ORTHO05D005048 4.8e-102 375.6 391 57.8
TWI09G0210 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 9.0e-101 371.3 391 56.0
FAN23G0043 Fragaria x ananassa HOM05D004420 ORTHO05D005048 2.0e-100 370.2 391 58.3
QL06p053029 Quercus lobata HOM05D004420 ORTHO05D005048 6.5e-99 365.2 397 61.5
Duzib264G0151 Durio zibethinus HOM05D004420 ORTHO05D005048 3.5e-97 359.4 392 58.9
Cpa.g.sc6.366 Carica papaya HOM05D004420 ORTHO05D005048 6.1e-97 358.6 391 54.7
MD02G1114600 Malus domestica HOM05D004420 ORTHO05D005048 8.7e-96 354.8 391 57.5
Ciclev10025852m.g Citrus clementina HOM05D004420 ORTHO05D005048 7.4e-95 351.7 399 55.4
TWI53G1718 Tripterygium wilfordii HOM05D004420 ORTHO05D005048 4.8e-94 349.0 368 57.3
MD15G1230400 Malus domestica HOM05D004420 ORTHO05D005048 1.1e-93 347.8 396 56.1
COL.COLO4_22555 Corchorus olitorius HOM05D004420 ORTHO05D005048 4.1e-93 345.9 366 60.7
Gohir.D03G001500 Gossypium hirsutum HOM05D004420 ORTHO05D005048 4.5e-92 342.4 393 59.8
Glyma.01G158300 Glycine max HOM05D004420 ORTHO05D005048 1.3e-91 340.9 390 56.4
Phvul.003G270300 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 2.9e-91 339.7 390 54.4
Gohir.A02G178300 Gossypium hirsutum HOM05D004420 ORTHO05D005048 5.0e-91 339.0 397 58.9
arahy.Tifrunner.gnm1.ann1.7Y7MXI Arachis hypogaea HOM05D004420 ORTHO05D005048 6.5e-91 338.6 388 54.6
arahy.Tifrunner.gnm1.ann1.PTZ9GF Arachis hypogaea HOM05D004420 ORTHO05D005048 6.5e-91 338.6 388 54.6
Gorai.003G001900 Gossypium raimondii HOM05D004420 ORTHO05D005048 1.4e-90 337.4 395 59.0
Ca_02853_v3 Cicer arietinum L. HOM05D004420 ORTHO05D005048 9.4e-90 334.7 390 53.6
VMungo0251G1478 Vigna mungo HOM05D004420 ORTHO05D005048 2.7e-89 333.2 390 55.1
Dinv40192 Davidia involucrata HOM05D004420 ORTHO05D005048 7.9e-89 331.6 393 52.4
Atru.chr3.127 Acer truncatum HOM05D004420 ORTHO05D005048 2.3e-88 330.1 398 55.5
Phvul.002G117000 Phaseolus vulgaris HOM05D004420 ORTHO05D005048 3.0e-88 329.7 392 55.9
CsaV3_3G000180 Cucumis sativus L. HOM05D004420 ORTHO05D005048 9.7e-87 324.7 392 54.8
MELO3C013712.2 Cucumis melo HOM05D004420 ORTHO05D005048 2.8e-86 323.2 392 54.6
Medtr8g073305 Medicago truncatula HOM05D004420 ORTHO05D005048 1.8e-85 320.5 393 52.7
VMungo1215G0928 Vigna mungo HOM05D004420 ORTHO05D005048 2.0e-84 317.0 394 53.8
Lalb_Chr05g0214821 Lupinus albus HOM05D004420 ORTHO05D005048 1.0e-83 314.7 389 53.5
ClCG10G000160 Citrullus lanatus HOM05D004420 ORTHO05D005048 2.9e-83 313.2 404 52.2
Psat4g103680 Pisum sativum HOM05D004420 ORTHO05D005048 8.5e-83 311.6 396 51.0
Glyma.11G086400 Glycine max HOM05D004420 ORTHO05D005048 1.1e-82 311.2 402 53.2
TPR.G13730 Trifolium pratense HOM05D004420 ORTHO05D005048 3.2e-82 309.7 394 52.3
CSS0016949 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.6e-81 306.2 394 49.2
CSS0044881 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 3.6e-81 306.2 394 49.2
Eucgr.I02220 Eucalyptus grandis HOM05D004420 ORTHO05D005048 6.1e-81 305.4 391 50.4
Dinv40193 Davidia involucrata HOM05D004420 ORTHO05D005048 5.1e-80 302.4 393 50.1
CiPaw.07G002200 Carya illinoinensis HOM05D004420 ORTHO05D005048 1.1e-79 301.2 342 59.4
CSS0013805 Camellia sinensis var. sinensis HOM05D004420 ORTHO05D005048 2.0e-79 300.4 395 49.6
Lalb_Chr09g0334351 Lupinus albus HOM05D004420 ORTHO05D005048 4.8e-78 295.8 390 51.0
CANSAT25G3726 Cannabis sativa HOM05D004420 ORTHO05D005048 6.3e-78 295.4 395 52.4
Lj2g0010108 Lotus japonicus HOM05D004420 ORTHO05D005048 1.2e-76 291.2 391 51.9
Actinidia17355 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.7e-75 287.3 394 48.0
Glyma.09G197900 Glycine max HOM05D004420 ORTHO05D005048 1.9e-74 283.9 366 52.7
Hma1.2p1_0085F.1_g044630 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 4.2e-74 282.7 396 47.2
PGR119G1834 Punica granatum HOM05D004420 ORTHO05D005048 5.5e-74 282.3 398 50.3
Hma1.2p1_0300F.1_g117950 Hydrangea macrophylla HOM05D004420 ORTHO05D005048 8.0e-73 278.5 396 47.7
Lalb_Chr09g0324761 Lupinus albus HOM05D004420 ORTHO05D005048 8.0e-73 278.5 388 48.7
Actinidia35683 Actinidia chinensis HOM05D004420 ORTHO05D005048 2.3e-72 276.9 394 48.2
Sed0027819 Sechium edule HOM05D004420 ORTHO05D005048 3.0e-72 276.6 393 50.6
Actinidia22893 Actinidia chinensis HOM05D004420 ORTHO05D005048 5.2e-72 275.8 394 49.0
Gorai.001G199300 Gossypium raimondii HOM05D004420 ORTHO05D005048 8.8e-72 275.0 354 54.2
Gohir.D07G178200 Gossypium hirsutum HOM05D004420 ORTHO05D005048 3.3e-71 273.1 354 54.0
Actinidia28747 Actinidia chinensis HOM05D004420 ORTHO05D005048 1.7e-70 270.8 390 49.5
Cc07_g11920 Coffea canephora HOM05D004420 ORTHO05D005048 1.7e-70 270.8 408 47.1
Nitab4.5_0004608g0040 Nicotiana tabacum HOM05D004420 ORTHO05D005048 4.8e-70 269.2 410 46.3
Gohir.A07G173800 Gossypium hirsutum HOM05D004420 ORTHO05D005048 2.4e-69 266.9 354 54.5
Glyma.16G111400 Glycine max HOM05D004420 ORTHO05D005048 2.7e-68 263.5 367 50.7
Rhsim10G0195100 Rhododendron simsii HOM05D004420 ORTHO05D005048 3.8e-67 259.6 391 44.2
Nitab4.5_0001467g0050 Nicotiana tabacum HOM05D004420 ORTHO05D005048 3.2e-66 256.5 408 45.1
Sopen02g027250 Solanum pennellii HOM05D004420 ORTHO05D005048 7.2e-66 255.4 409 45.2
Lj2P500T27 Lonicera japonica HOM05D004420 ORTHO05D005048 1.2e-65 254.6 393 45.3
CAN.G1238.15 Capsicum annuum HOM05D004420 ORTHO05D005048 6.1e-65 252.3 407 45.2
Lj4g0016332 Lotus japonicus HOM05D004420 ORTHO05D005048 6.1e-65 252.3 388 46.9
PGSC0003DMG400001515 Solanum tuberosum HOM05D004420 ORTHO05D005048 1.8e-64 250.8 409 45.5
Lalb_Chr16g0380091 Lupinus albus HOM05D004420 ORTHO05D005048 1.3e-62 244.6 392 45.4
Oeu045734.2 Olea europaea HOM05D004420 ORTHO05D005048 6.3e-62 242.3 407 41.5
EL10Ac6g15050 Beta vulgaris HOM05D004420 ORTHO05D005048 1.1e-61 241.5 394 49.0
vmacro20627 Vaccinium macrocarpon HOM05D004420 ORTHO05D005048 7.0e-61 238.8 379 42.7
Peaxi162Scf00121g00249 Petunia axillaris HOM05D004420 ORTHO05D005048 2.0e-60 237.3 410 44.4
GSVIVG01022291001 Vitis vinifera HOM05D004420 ORTHO05D005048 1.0e-59 235.0 392 45.7
Oeu043391.2 Olea europaea HOM05D004420 ORTHO05D005048 3.8e-59 233.0 408 41.4
Ah.03g142860 Amaranthus hybridus HOM05D004420 ORTHO05D005048 6.5e-59 232.3 399 48.1
Ah.02g123000 Amaranthus hybridus HOM05D000464 ORTHO05D005048 3.2e-58 229.9 394 47.0
Lj4P237T30 Lonicera japonica HOM05D004420 ORTHO05D005048 4.2e-58 229.6 403 50.1
TAR376G0940 Trochodendron aralioides HOM05D004420 ORTHO05D005048 7.2e-58 228.8 397 44.6
AUR62003743 Chenopodium quinoa HOM05D004420 ORTHO05D005048 6.8e-56 222.2 272 52.2
Sc07g0001390 Simmondsia chinensis HOM05D004420 ORTHO05D005048 1.2e-55 221.5 398 44.7
DCAR_014284 Daucus carota HOM05D004420 ORTHO05D005048 3.4e-55 219.9 391 42.7
DCAR_014308 Daucus carota HOM05D004420 ORTHO05D005048 3.4e-55 219.9 391 42.7
AUR62002052 Chenopodium quinoa HOM05D004420 ORTHO05D005048 1.6e-52 211.1 394 40.6
THA.LOC104819714 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 2.7e-52 210.3 402 45.3
Migut.F01091 Erythranthe guttata HOM05D004420 ORTHO05D005048 4.5e-52 209.5 392 41.1
THA.LOC104807425 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 5.9e-52 209.1 403 45.9
Aa31LG8G14840 Aethionema arabicum HOM05D004420 ORTHO05D005048 1.7e-51 207.6 394 44.4
AL3G50510 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.6e-49 201.1 393 41.7
TAR625G1485 Trochodendron aralioides HOM05D004420 ORTHO05D005048 1.2e-47 194.9 391 40.2
SalBow2G0301 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.9e-46 190.3 401 41.1
SalBow2G0742 Salvia bowleyana HOM05D004420 ORTHO05D005048 2.9e-46 190.3 401 41.1
Carub.0007s0482 Capsella rubella HOM05D004420 ORTHO05D005048 8.3e-46 188.7 396 40.9
AT4G35510 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 1.8e-45 187.6 398 42.5
Carub.0003s3163 Capsella rubella HOM05D004420 ORTHO05D005048 5.4e-45 186.0 395 39.2
CARHR243840 Cardamine hirsuta HOM05D004420 ORTHO05D005048 2.7e-44 183.7 391 39.9
Solyc03g032100.2 Solanum lycopersicum HOM05D004420 ORTHO05D005048 1.7e-43 181.0 330 42.4
Sopen03g005950 Solanum pennellii HOM05D004420 ORTHO05D005048 3.9e-43 179.9 330 42.1
TAR381G0338 Trochodendron aralioides HOM05D004420 ORTHO05D005048 5.0e-43 179.5 350 41.7
Nn6g31686 Nelumbo nucifera HOM05D004420 ORTHO05D005048 5.6e-42 176.0 332 44.6
AL7G15660 Arabidopsis lyrata HOM05D004420 ORTHO05D005048 1.0e-40 171.8 398 41.0
Aqoxy6G01610 Aquilegia oxysepala HOM05D004420 ORTHO05D005048 2.0e-39 167.5 393 36.6
PGSC0003DMG400018682 Solanum tuberosum HOM05D004420 ORTHO05D005048 8.3e-38 162.2 330 39.7
ECA246G3765 Erigeron canadensis HOM05D004420 ORTHO05D005048 1.9e-37 161.0 397 38.0
Sp3g30900 Schrenkiella parvula HOM05D004420 ORTHO05D005048 1.9e-37 161.0 324 44.4
Thhalv10025668m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 2.4e-37 160.6 399 41.1
HanXRQChr16g0531901 Helianthus annuus HOM05D004420 ORTHO05D005048 2.4e-37 160.6 393 37.9
PSO210G4741 Papaver somniferum HOM05D004420 ORTHO05D005048 4.1e-37 159.8 358 37.2
HanXRQChr16g0531911 Helianthus annuus HOM05D004420 ORTHO05D005048 5.4e-37 159.5 393 37.9
unitig_46.g18801 Utricularia gibba HOM05D004420 ORTHO05D005048 9.2e-37 158.7 399 33.8
PSO761G0558 Papaver somniferum HOM05D004420 ORTHO05D005048 1.2e-36 158.3 358 37.4
Migut.F00308 Erythranthe guttata HOM05D004420 ORTHO05D005048 1.3e-35 154.8 397 35.5
CiPaw.13G121300 Carya illinoinensis HOM05D004420 ORTHO05D005048 6.6e-35 152.5 169 63.9
Thhalv10022789m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 8.6e-35 152.1 328 44.5
SGA_v2.0_scaffold10G05298 Striga asiatica HOM05D004420 ORTHO05D005048 8.6e-35 152.1 392 37.2
C07p05740 Brassica napus HOM05D004420 ORTHO05D005048 1.2e-33 148.3 366 39.3
BcaC06g36286 Brassica carinata HOM05D004420 ORTHO05D005048 4.7e-33 146.4 358 39.9
Eucgr.J02539 Eucalyptus grandis HOM05D004420 ORTHO05D005048 1.4e-32 144.8 198 51.5
BcaB08g34743 Brassica carinata HOM05D004420 ORTHO05D005048 1.8e-32 144.4 324 40.7
BcaB03g16523 Brassica carinata HOM05D004420 ORTHO05D005048 2.3e-32 144.1 366 39.6
Sp7g33290 Schrenkiella parvula HOM05D004420 ORTHO05D005048 2.3e-32 144.1 339 41.6
A06p33900 Brassica napus HOM05D004420 ORTHO05D005048 2.2e-30 137.5 317 39.7
BraA06t26325Z Brassica rapa HOM05D004420 ORTHO05D005048 3.7e-30 136.7 317 39.4
BolC3t18106H Brassica oleracea HOM05D004420 ORTHO05D005048 2.4e-29 134.0 348 40.8
MBI08_g12255_MAGBIO Magnolia biondii HOM05D004420 ORTHO05D005048 4.1e-29 133.3 388 34.8
SGA_v2.0_scaffold60G21098 Striga asiatica HOM05D004420 ORTHO05D005048 5.4e-29 132.9 331 36.6
CAN.G354.13 Capsicum annuum HOM05D004420 ORTHO05D005048 4.6e-28 129.8 341 37.2
Peaxi162Scf00580g00013 Petunia axillaris HOM05D004420 ORTHO05D005048 1.9e-26 124.4 231 42.0
BcaC01g02911 Brassica carinata HOM05D004420 ORTHO05D005048 5.6e-26 122.9 348 39.9
C03p58480 Brassica napus HOM05D004420 ORTHO05D005048 5.6e-26 122.9 348 39.9
Lsat_1_v5_gn_8_112420 Lactuca sativa HOM05D004420 ORTHO05D005048 3.6e-25 120.2 387 32.8
BraA07t28141Z Brassica rapa HOM05D004420 ORTHO05D005048 1.2e-23 115.2 354 35.0
BolC7t40973H Brassica oleracea HOM05D004420 ORTHO05D005048 7.6e-23 112.5 366 34.4
unitig_52.g17736 Utricularia gibba HOM05D004420 ORTHO05D005048 7.6e-23 112.5 225 44.0
Lsat_1_v5_gn_3_67941 Lactuca sativa HOM05D004420 ORTHO05D005048 2.9e-22 110.5 240 40.8
Solyc02g082570.3 Solanum lycopersicum HOM05D004420 ORTHO05D005048 4.9e-22 109.8 172 46.5
CDE05G3647 Ceratophyllum demersum HOM05D004420 ORTHO05D005048 2.4e-21 107.5 382 29.8
AT2G17540 Arabidopsis thaliana HOM05D004420 ORTHO05D005048 3.2e-21 107.1 391 33.2
BcaNung03633 Brassica carinata HOM05D004420 ORTHO05D005048 3.2e-21 107.1 313 36.4
CDE05G1602 Ceratophyllum demersum HOM05D001617 ORTHO05D008611 1.2e-17 95.1 319 31.7
BraA01t00293Z Brassica rapa HOM05D004420 ORTHO05D005048 8.1e-17 92.4 317 38.5
Thhalv10022985m.g Eutrema salsugineum HOM05D004420 ORTHO05D005048 1.1e-16 92.0 144 54.9
A01p03090 Brassica napus HOM05D004420 ORTHO05D005048 2.4e-16 90.9 316 37.3
CARHR107720 Cardamine hirsuta HOM05D004420 ORTHO05D005048 3.1e-16 90.5 390 31.0
BraA03t15434Z Brassica rapa HOM05D004420 ORTHO05D005048 1.2e-15 88.6 385 34.5
A03p63630 Brassica napus HOM05D004420 ORTHO05D005048 3.4e-15 87.0 385 34.5
BolC1t00331H Brassica oleracea HOM05D004420 ORTHO05D005048 9.9e-15 85.5 220 44.1
BcaNung00585 Brassica carinata HOM05D004420 ORTHO05D005048 2.2e-14 84.3 212 44.3
C01p03440 Brassica napus HOM05D004420 ORTHO05D005048 2.2e-14 84.3 212 44.3
C07p61200 Brassica napus HOM05D004420 ORTHO05D005048 2.9e-14 84.0 318 36.5
BolC7t46546H Brassica oleracea HOM05D004420 ORTHO05D005048 2.9e-14 84.0 318 37.1
THA.LOC104804296 Tarenaya hassleriana HOM05D004420 ORTHO05D005048 1.9e-10 71.2 117 40.2
A07p03430 Brassica napus HOM05D004420 ORTHO05D005048 1.4e-08 65.1 276 30.8


User provided reference genes

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