Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 6.2e-55 217.2 111 100.0
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.4e-11 73.2 61 70.5
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 1.9e-11 72.8 59 71.2
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 9.4e-11 70.5 59 69.5
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 9.4e-11 70.5 59 69.5
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 3.6e-10 68.6 59 69.5
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 6.1e-10 67.8 59 67.8
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 6.1e-10 67.8 59 67.8
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 6.1e-10 67.8 59 67.8
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 6.1e-10 67.8 59 67.8
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 6.1e-10 67.8 62 64.5
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 6.1e-10 67.8 62 64.5
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 7.9e-10 67.4 59 67.8
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 7.9e-10 67.4 59 67.8
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 7.9e-10 67.4 59 67.8
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 1.0e-09 67.0 59 67.8
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.0e-09 67.0 59 67.8
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.8e-09 66.2 59 67.8
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.3e-09 65.9 54 72.2
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.3e-09 65.9 54 72.2
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.3e-09 65.9 54 72.2
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.3e-09 65.9 59 66.1
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.3e-09 65.9 59 66.1
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.3e-09 65.9 54 72.2
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 3.0e-09 65.5 57 68.4
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 3.0e-09 65.5 54 72.2
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 3.0e-09 65.5 59 66.1
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 3.0e-09 65.5 59 66.1
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 3.0e-09 65.5 54 72.2
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.0e-09 65.5 59 66.1
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.0e-09 65.5 59 66.1
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 3.9e-09 65.1 54 70.4
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 3.9e-09 65.1 54 70.4
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 3.9e-09 65.1 62 62.9
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 3.9e-09 65.1 59 66.1
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 3.9e-09 65.1 59 66.1
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 3.9e-09 65.1 59 66.1
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 3.9e-09 65.1 59 66.1
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 5.1e-09 64.7 59 66.1
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 5.1e-09 64.7 59 66.1
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 6.7e-09 64.3 58 65.5
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 6.7e-09 64.3 58 65.5
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 8.8e-09 63.9 54 70.4
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 8.8e-09 63.9 54 70.4
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.1e-08 63.5 59 64.4
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 1.1e-08 63.5 59 64.4
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-08 63.2 59 64.4
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-08 63.2 59 64.4
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-08 63.2 59 64.4
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-08 63.2 59 64.4
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.5e-08 63.2 54 70.4
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 1.5e-08 63.2 54 70.4
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 2.5e-08 62.4 59 62.7
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 2.5e-08 62.4 54 68.5
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 2.5e-08 62.4 54 68.5
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 3.3e-08 62.0 59 64.4
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 5.7e-08 61.2 54 68.5
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 7.4e-08 60.8 52 69.2
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 7.4e-08 60.8 54 66.7
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 7.4e-08 60.8 58 62.1
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.8e-06 56.2 59 61.0
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.9e-06 54.3 49 67.3


User provided reference genes

Program Settings