Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G062402 Populus trichocarpa HOM05D005794 ORTHO05D006814 9.0e-153 543.5 266 100.0
CANSAT16G0022 Cannabis sativa HOM05D005794 ORTHO05D006814 1.3e-151 539.7 266 98.5
Duzib116G0905 Durio zibethinus HOM05D005794 ORTHO05D006814 8.2e-146 520.4 266 96.6
EL10Ac1g02199 Beta vulgaris HOM05D005794 ORTHO05D006814 4.1e-145 518.1 263 96.2
AL5G20240 Arabidopsis lyrata HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
A04p09480 Brassica napus HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
BolSC28t60379H Brassica oleracea HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
BolSC28t60413H Brassica oleracea HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
BraSC48t46249Z Brassica rapa HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
BraSC54t46376Z Brassica rapa HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
CARHR283070 Cardamine hirsuta HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
Sp3g25640 Schrenkiella parvula HOM05D005794 ORTHO05D006814 9.1e-145 516.9 266 95.5
Cpa.g.c32646 Carica papaya HOM05D005794 ORTHO05D006814 2.0e-144 515.8 266 95.5
AT2G07687 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 4.5e-144 514.6 266 95.5
ATMG00730 Arabidopsis thaliana HOM05D005794 ORTHO05D006814 4.5e-144 514.6 266 95.5
PGR028G0014 Punica granatum HOM05D005794 ORTHO05D006814 5.9e-144 514.2 266 96.2
SGA_v2.0_scaffold575G53003 Striga asiatica HOM05D005794 ORTHO05D006814 3.8e-143 511.5 263 96.2
Solyc00g500303.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 1.2e-141 506.5 266 94.4
Sopen00g001030 Solanum pennellii HOM05D005794 ORTHO05D006814 1.2e-141 506.5 266 94.4
unitig_87.g28013 Utricularia gibba HOM05D005794 ORTHO05D006814 3.6e-141 505.0 266 95.1
DCAR_032446 Daucus carota HOM05D005794 ORTHO05D006814 1.4e-140 503.1 266 94.0
RcHm_v2.0_Chr6g0257971 Rosa chinensis HOM05D005794 ORTHO05D006814 1.8e-140 502.7 266 94.7
RcHm_v2.0_MTg0498891 Rosa chinensis HOM05D005794 ORTHO05D006814 1.8e-140 502.7 266 94.7
Zm00001eb384510 Zea mays HOM05D005794 ORTHO05D006814 6.7e-140 500.7 266 93.2
Zm00001eb437480 Zea mays HOM05D005794 ORTHO05D006814 6.7e-140 500.7 266 93.2
LjContig00315g0011412 Lotus japonicus HOM05D005794 ORTHO05D006814 1.5e-139 499.6 266 94.4
arahy.Tifrunner.gnm1.ann1.KSB3D6 Arachis hypogaea HOM05D005794 ORTHO05D006814 2.0e-139 499.2 264 95.1
Glyma.12G155300 Glycine max HOM05D005794 ORTHO05D006814 7.4e-139 497.3 266 94.4
arahy.Tifrunner.gnm1.ann1.Y4WQEL Arachis hypogaea HOM05D005794 ORTHO05D006814 9.7e-139 496.9 264 94.7
Sopen06g006940 Solanum pennellii HOM05D005794 ORTHO05D006814 2.8e-138 495.4 266 93.2
HanXRQMTg0579171 Helianthus annuus HOM05D005794 ORTHO05D006814 1.1e-137 493.4 266 93.2
Lj2P1225T95 Lonicera japonica HOM05D005794 ORTHO05D006814 3.4e-136 488.4 266 92.5
SabraMtG0005200 Salix brachista HOM05D005794 ORTHO05D006814 2.2e-135 485.7 238 100.0
Sabra04G0097400 Salix brachista HOM05D005794 ORTHO05D006814 6.5e-135 484.2 238 99.6
Nn1g10154 Nelumbo nucifera HOM05D005794 ORTHO05D006814 2.1e-133 479.2 266 91.7
Lalb_Chr00c24g0406721 Lupinus albus HOM05D005794 ORTHO05D006814 1.8e-132 476.1 250 95.2
Medtr0082s0160 Medicago truncatula HOM05D005794 ORTHO05D006814 2.3e-132 475.7 250 94.8
arahy.Tifrunner.gnm1.ann1.3CRZ8T Arachis hypogaea HOM05D005794 ORTHO05D006814 3.0e-132 475.3 251 95.2
Ca_28561_v3 Cicer arietinum L. HOM05D005794 ORTHO05D006814 3.0e-132 475.3 255 93.7
arahy.Tifrunner.gnm1.ann1.R0J8GI Arachis hypogaea HOM05D005794 ORTHO05D006814 1.5e-131 473.0 251 94.8
Gorai.001G162400 Gossypium raimondii HOM05D005794 ORTHO05D006814 2.0e-131 472.6 265 89.4
SHI15111 Sapria himalayana HOM05D005794 ORTHO05D006814 2.6e-131 472.2 263 87.5
Hma1.2p1_1338F.1_g276546 Hydrangea macrophylla HOM05D005794 ORTHO05D006814 3.3e-131 471.9 250 94.4
Lj2P1227T94 Lonicera japonica HOM05D005794 ORTHO05D006814 7.4e-131 470.7 266 89.8
Thhalv10023004m.g Eutrema salsugineum HOM05D005794 ORTHO05D006814 2.2e-130 469.2 266 88.3
Actinidia34813 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.4e-129 465.7 243 94.7
Actinidia34939 Actinidia chinensis HOM05D005794 ORTHO05D006814 2.4e-129 465.7 243 94.7
Lj3g0000092 Lotus japonicus HOM05D005794 ORTHO05D006814 2.5e-126 455.7 265 88.3
arahy.Tifrunner.gnm1.ann1.TM4QCS Arachis hypogaea HOM05D005794 ORTHO05D006814 1.0e-124 450.3 239 95.0
SEGI_38498 Sequoiadendron giganteum HOM05D005794 ORTHO05D006814 5.2e-124 448.0 262 85.5
Lsat_1_v5_gn_8_111680 Lactuca sativa HOM05D005794 ORTHO05D006814 1.8e-121 439.5 264 86.0
Gorai.013G213200 Gossypium raimondii HOM05D005794 ORTHO05D006814 3.4e-115 418.7 261 82.4
Lsat_1_v5_gn_0_2580 Lactuca sativa HOM05D005794 ORTHO05D006814 9.8e-115 417.2 250 86.0
BraSC77t46625Z Brassica rapa HOM05D005794 ORTHO05D006814 7.0e-113 411.0 209 96.2
Zm00001eb434650 Zea mays HOM05D005794 ORTHO05D006814 4.0e-108 395.2 211 93.4
Zm00001eb434760 Zea mays HOM05D005794 ORTHO05D006814 4.0e-108 395.2 211 93.4
Ah.10g027990 Amaranthus hybridus HOM05D005794 ORTHO05D006814 5.2e-108 394.8 202 97.5
CsaV3_5G015890 Cucumis sativus L. HOM05D005794 ORTHO05D006814 8.8e-108 394.0 209 93.8
Medtr6g032895 Medicago truncatula HOM05D005794 ORTHO05D006814 4.9e-106 388.3 213 92.5
Ah.02g118920 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.1e-105 387.1 209 93.8
arahy.Tifrunner.gnm1.ann1.75B77C Arachis hypogaea HOM05D005794 ORTHO05D006814 9.2e-105 384.0 251 80.5
Nitab4.5_0008916g0010 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-102 376.7 257 77.8
CsaV3_5G015960 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.4e-97 360.1 209 86.1
DCAR_029125 Daucus carota HOM05D005794 ORTHO05D006814 8.0e-93 344.4 187 92.5
Nitab4.5_0005637g0070 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-86 323.6 184 88.0
Lsat_1_v5_gn_5_16240 Lactuca sativa HOM05D005794 ORTHO05D006814 1.1e-78 297.4 161 92.5
Ah.10g028710 Amaranthus hybridus HOM05D005794 ORTHO05D006814 1.9e-78 296.6 159 93.7
ECA039G0030 Erigeron canadensis HOM05D005794 ORTHO05D006814 2.5e-78 296.2 148 98.0
Lj1g0014382 Lotus japonicus HOM05D005794 ORTHO05D006814 1.2e-75 287.3 249 66.3
CDE02G1904 Ceratophyllum demersum HOM05D005794 ORTHO05D006814 1.2e-72 277.3 156 89.7
Solyc00g019730.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 7.8e-72 274.6 145 93.1
Haze_26985 Corylus avellana HOM05D005794 ORTHO05D006814 1.7e-71 273.5 279 50.9
CsaV3_5G015820 Cucumis sativus L. HOM05D005794 ORTHO05D006814 1.7e-71 273.5 145 92.4
CAN.G1.2 Capsicum annuum HOM05D005794 ORTHO05D006814 3.0e-71 272.7 148 90.5
Dinv06703 Davidia involucrata HOM05D005794 ORTHO05D006814 1.9e-70 270.0 150 91.3
Nitab4.5_0009256g0040 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.0e-68 262.3 195 73.8
ATR0012G027 Amborella trichopoda HOM05D005794 ORTHO05D006814 1.2e-67 260.8 209 68.4
VMungo0720G2970 Vigna mungo HOM05D005794 ORTHO05D006814 2.9e-66 256.1 130 96.2
Zm00001eb384560 Zea mays HOM05D005794 ORTHO05D006814 1.1e-57 227.6 119 93.3
Zm00001eb436440 Zea mays HOM05D005794 ORTHO05D006814 1.4e-57 227.3 122 91.8
Nitab4.5_0004553g0080 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.2e-57 226.1 160 75.0
Sed0025732 Sechium edule HOM05D005794 ORTHO05D006814 6.7e-55 218.4 120 93.3
Nitab4.5_0003945g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.7e-50 203.8 116 86.2
CAN.G134.170 Capsicum annuum HOM05D005794 ORTHO05D006814 8.4e-50 201.4 108 92.6
SalBow1G4628 Salvia bowleyana HOM05D005794 ORTHO05D006814 2.1e-48 196.8 101 96.0
Medtr0495s0020 Medicago truncatula HOM05D005794 ORTHO05D006814 3.9e-47 192.6 117 86.3
Nn1g10038 Nelumbo nucifera HOM05D005794 ORTHO05D006814 8.7e-47 191.4 104 92.3
BraSC224t45812Z Brassica rapa HOM05D005794 ORTHO05D006814 5.3e-44 182.2 85 100.0
Sed0001254 Sechium edule HOM05D005794 ORTHO05D006814 5.3e-44 182.2 105 89.5
C01p34950 Brassica napus HOM05D005794 ORTHO05D006814 6.9e-44 181.8 101 87.1
SHI20513 Sapria himalayana HOM05D005794 ORTHO05D006814 6.5e-42 175.3 213 48.4
Nitab4.5_0004100g0090 Nicotiana tabacum HOM05D009808 ORTHO05D006814 2.5e-41 173.3 165 60.0
Nitab4.5_0001788g0090 Nicotiana tabacum HOM05D005794 ORTHO05D006814 3.9e-39 166.0 184 52.7
Cre04.g221700 Chlamydomonas reinhardtii HOM05D005794 ORTHO05D006814 3.3e-38 162.9 259 35.5
SHI37163 Sapria himalayana HOM05D005794 ORTHO05D006814 1.5e-35 154.1 81 91.4
Nitab4.5_0000172g1250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 4.6e-32 142.5 107 70.1
Oeu000568.1 Olea europaea HOM05D005794 ORTHO05D006814 7.9e-32 141.7 104 74.0
BraSC177t45751Z Brassica rapa HOM05D005794 ORTHO05D006814 1.5e-30 137.5 84 83.3
VMungo0720G2880 Vigna mungo HOM05D005794 ORTHO05D006814 5.7e-30 135.6 82 85.4
Nitab4.5_0000886g0250 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.3e-29 134.4 149 54.4
SHI35300 Sapria himalayana HOM05D005794 ORTHO05D006814 4.1e-28 129.4 80 80.0
SHI48376 Sapria himalayana HOM05D005794 ORTHO05D006814 5.3e-28 129.0 75 84.0
Nitab4.5_0000172g0610 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.5e-25 120.2 79 78.5
SHI44549 Sapria himalayana HOM05D005794 ORTHO05D006814 1.6e-24 117.5 62 88.7
Gohir.D04G096432 Gossypium hirsutum HOM05D005794 ORTHO05D006814 4.7e-24 115.9 105 61.9
Nitab4.5_0003945g0050 Nicotiana tabacum HOM05D018533 ORTHO05D006814 3.9e-23 112.8 68 79.4
SMO310G0001 Selaginella moellendorffii HOM05D005794 ORTHO05D006814 5.7e-22 109.0 154 46.8
Nitab4.5_0002418g0190 Nicotiana tabacum HOM05D005794 ORTHO05D006814 8.2e-21 105.1 63 81.0
MELO3C018157.2 Cucumis melo HOM05D005794 ORTHO05D006814 5.3e-20 102.4 53 90.6
SHI54766 Sapria himalayana HOM05D005794 ORTHO05D006814 2.2e-18 97.1 48 93.8
Psat0s4951g0040 Pisum sativum HOM05D005794 ORTHO05D006814 8.5e-18 95.1 172 41.3
Lsat_1_v5_gn_5_16260 Lactuca sativa HOM05D005794 ORTHO05D006814 5.5e-17 92.4 65 73.8
Nitab4.5_0001152g0840 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.1e-16 89.0 67 70.1
SHI14272 Sapria himalayana HOM05D005794 ORTHO05D006814 6.1e-16 89.0 61 67.2
SHI14273 Sapria himalayana HOM05D005794 ORTHO05D006814 1.0e-15 88.2 119 46.2
Nitab4.5_0002326g0060 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.6e-14 83.6 53 83.0
SHI50742 Sapria himalayana HOM05D005794 ORTHO05D006814 1.3e-13 81.3 39 89.7
SHI20514 Sapria himalayana HOM05D005794 ORTHO05D006814 2.8e-13 80.1 41 85.4
Duzib116G0892 Durio zibethinus HOM05D005794 ORTHO05D006814 3.7e-13 79.7 59 72.9
TPR.G25412 Trifolium pratense HOM05D005794 ORTHO05D006814 3.7e-13 79.7 53 83.0
Solyc03g013460.1 Solanum lycopersicum HOM05D005794 ORTHO05D006814 6.3e-13 79.0 65 60.0
Nitab4.5_0000681g0270 Nicotiana tabacum HOM05D005794 ORTHO05D006814 2.4e-12 77.0 56 75.0
SHI16155 Sapria himalayana HOM05D005794 ORTHO05D006814 5.3e-12 75.9 84 50.0
Oeu030834.3 Olea europaea HOM05D005794 ORTHO05D006814 4.5e-11 72.8 35 91.4
Nitab4.5_0002418g0170 Nicotiana tabacum HOM05D009000 ORTHO05D010659 4.2e-09 66.2 31 93.5
RhsimMtG0003200 Rhododendron simsii HOM05D007924 ORTHO05D010328 1.2e-08 64.7 33 84.8
Aa31csc549G50 Aethionema arabicum HOM05D005794 ORTHO05D006814 2.7e-08 63.5 29 96.6
Nitab4.5_0004100g0120 Nicotiana tabacum HOM05D005794 ORTHO05D006814 6.1e-08 62.4 30 90.0
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 2.3e-07 60.5 53 58.5
CSS0006210 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 4.0e-07 59.7 32 84.4
SHI48878 Sapria himalayana HOM05D005794 ORTHO05D006814 4.0e-07 59.7 30 83.3
CSS0015180 Camellia sinensis var. sinensis HOM05D005794 ORTHO05D006814 1.2e-06 58.2 31 83.9
Nitab4.5_0004553g0100 Nicotiana tabacum HOM05D005794 ORTHO05D006814 1.5e-06 57.8 68 48.5
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 5.7e-06 55.8 58 39.7


User provided reference genes

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