Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G062102 Populus trichocarpa HOM05D005210 ORTHO05D010080 6.8e-111 404.1 212 100.0
Nitab4.5_0000299g0070 Nicotiana tabacum HOM05D005210 ORTHO05D010080 9.7e-57 224.2 219 64.4
PGR069G0003 Punica granatum HOM05D005210 ORTHO05D010080 1.7e-53 213.4 220 62.7
Nn1g09997 Nelumbo nucifera HOM05D005210 ORTHO05D010080 8.5e-53 211.1 215 64.2
Nn1g10098 Nelumbo nucifera HOM05D005210 ORTHO05D010080 8.5e-53 211.1 215 64.2
Atru.chr1.3624 Acer truncatum HOM05D005210 ORTHO05D010080 4.2e-52 208.8 217 62.2
CAN.G1109.4 Capsicum annuum HOM05D005210 ORTHO05D010080 2.0e-49 199.9 143 76.2
CAN.G110.12 Capsicum annuum HOM05D005210 ORTHO05D010080 3.3e-49 199.1 143 74.8
Lj6g0026306 Lotus japonicus HOM05D005210 ORTHO05D010080 4.8e-48 195.3 220 57.7
TPR.G22447 Trifolium pratense HOM05D005210 ORTHO05D010080 6.3e-48 194.9 218 57.8
Lalb_Chr03g0038991 Lupinus albus HOM05D005210 ORTHO05D010080 1.1e-47 194.1 158 71.5
Medtr6g012880 Medicago truncatula HOM05D005210 ORTHO05D010080 1.1e-47 194.1 217 56.7
DCAR_032434 Daucus carota HOM05D005210 ORTHO05D010080 1.4e-47 193.7 215 58.6
Phvul.005G088636 Phaseolus vulgaris HOM05D005210 ORTHO05D010080 1.8e-47 193.4 218 60.6
TPR.G32363 Trifolium pratense HOM05D005210 ORTHO05D010080 2.4e-47 193.0 216 57.9
Nitab4.5_0006085g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.5e-44 183.0 194 62.4
CAN.G787.10 Capsicum annuum HOM05D005210 ORTHO05D010080 4.2e-44 182.2 205 58.5
Ciclev10012798m.g Citrus clementina HOM05D005210 ORTHO05D010080 1.2e-43 180.6 218 55.5
RcHm_v2.0_MTg0498311 Rosa chinensis HOM05D005210 ORTHO05D010080 2.7e-43 179.5 148 66.2
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 5.1e-42 175.3 194 60.3
Lsat_1_v5_gn_7_109460 Lactuca sativa HOM05D005210 ORTHO05D010080 4.4e-41 172.2 217 50.2
Nitab4.5_0001788g0200 Nicotiana tabacum HOM05D001750 ORTHO05D001825 7.4e-41 171.4 213 57.3
Cpa.g.sc38.57 Carica papaya HOM05D005210 ORTHO05D010080 9.7e-41 171.0 214 55.6
Nitab4.5_0001761g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 9.7e-41 171.0 179 62.6
arahy.Tifrunner.gnm1.ann1.00SNP9 Arachis hypogaea HOM05D005210 ORTHO05D010080 1.8e-39 166.8 213 56.8
Oeu020894.1 Olea europaea HOM05D005210 ORTHO05D010080 2.4e-39 166.4 215 51.6
arahy.Tifrunner.gnm1.ann1.883WGW Arachis hypogaea HOM05D005210 ORTHO05D010080 5.3e-39 165.2 213 56.3
Cfa023010 Carpinus fangiana HOM05D005210 ORTHO05D010080 1.6e-38 163.7 179 62.6
MBI04_g15069_MAGBIO Magnolia biondii HOM05D005210 ORTHO05D010080 4.5e-38 162.2 219 53.9
Lalb_Chr02g0153671 Lupinus albus HOM05D005210 ORTHO05D010080 5.9e-38 161.8 198 57.6
AUR62004733 Chenopodium quinoa HOM05D005210 ORTHO05D010080 1.0e-37 161.0 218 47.7
AUR62037526 Chenopodium quinoa HOM05D005210 ORTHO05D010080 8.5e-37 157.9 218 46.3
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 3.2e-36 156.0 204 55.9
CANSAT78G1777 Cannabis sativa HOM05D005210 ORTHO05D010080 7.2e-36 154.8 213 49.3
Gohir.A10G200000 Gossypium hirsutum HOM05D005210 ORTHO05D010080 1.2e-35 154.1 221 46.6
Gohir.D10G207900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 3.6e-35 152.5 221 46.6
VMungo0329G0007 Vigna mungo HOM05D005210 ORTHO05D010080 3.6e-35 152.5 184 59.2
Gorai.011G233600 Gossypium raimondii HOM05D005210 ORTHO05D010080 4.7e-35 152.1 221 46.6
Gohir.A10G199900 Gossypium hirsutum HOM05D005210 ORTHO05D010080 1.4e-34 150.6 219 45.2
Ca_15051_v3 Cicer arietinum L. HOM05D001750 ORTHO05D010080 2.6e-33 146.4 141 63.8
Ah.03g133380 Amaranthus hybridus HOM05D005210 ORTHO05D010080 9.7e-33 144.4 214 45.3
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 9.7e-33 144.4 176 57.4
MELO3C028549.2 Cucumis melo HOM05D005210 ORTHO05D010080 2.4e-31 139.8 185 56.2
Nitab4.5_0000172g0080 Nicotiana tabacum HOM05D001750 ORTHO05D001825 3.1e-31 139.4 169 57.4
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 4.1e-31 139.0 124 66.9
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 4.1e-31 139.0 124 66.9
Ca_22173_v3 Cicer arietinum L. HOM05D005210 ORTHO05D010080 4.1e-31 139.0 124 66.9
MSTRG.20585 Avicennia marina HOM05D005210 ORTHO05D010080 1.6e-30 137.1 219 44.3
Migut.B01305 Erythranthe guttata HOM05D005210 ORTHO05D010080 7.7e-30 134.8 210 43.3
SGA_v2.0_scaffold119G32726 Striga asiatica HOM05D005210 ORTHO05D010080 5.0e-29 132.1 220 42.7
SGA_v2.0_scaffold167G38415 Striga asiatica HOM05D005210 ORTHO05D010080 6.5e-29 131.7 220 42.3
GSVIVG01004978001 Vitis vinifera HOM05D005210 ORTHO05D010080 1.1e-28 131.0 124 67.7
SEGI_01777 Sequoiadendron giganteum HOM05D005210 ORTHO05D010080 4.2e-28 129.0 233 39.1
PGSC0003DMG400020779 Solanum tuberosum HOM05D005210 ORTHO05D010080 1.2e-27 127.5 293 37.2
CsaV3_UNG210330 Cucumis sativus L. HOM05D001560 ORTHO05D004675 3.6e-27 125.9 132 59.1
ECA236G2402 Erigeron canadensis HOM05D005210 ORTHO05D010080 4.7e-27 125.6 218 39.0
Aqoxy4G00327 Aquilegia oxysepala HOM05D005210 ORTHO05D010080 3.0e-26 122.9 216 41.2
SalBow8G1406 Salvia bowleyana HOM05D005210 ORTHO05D010080 6.8e-26 121.7 232 40.1
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-25 120.6 96 68.8
Peaxi162Scf01462g00001 Petunia axillaris HOM05D005210 ORTHO05D010080 2.0e-25 120.2 97 70.1
RcHm_v2.0_Chr2g0148221 Rosa chinensis HOM05D005210 ORTHO05D010080 2.2e-24 116.7 124 61.3
unitig_750.g28447 Utricularia gibba HOM05D005210 ORTHO05D010080 4.8e-24 115.5 219 40.6
Peaxi162Scf01267g00005 Petunia axillaris HOM05D005210 ORTHO05D010080 8.3e-24 114.8 140 59.3
RcHm_v2.0_Chr2g0148231 Rosa chinensis HOM05D005210 ORTHO05D010080 1.7e-21 107.1 73 72.6
Nitab4.5_0003632g0030 Nicotiana tabacum HOM05D005210 ORTHO05D034847 3.8e-21 105.9 86 69.8
QL04p020150 Quercus lobata HOM05D005210 ORTHO05D010080 1.9e-20 103.6 104 58.7
Oeu061104.1 Olea europaea HOM05D000700 ORTHO05D010080 9.4e-20 101.3 148 47.3
Sed0004476 Sechium edule HOM05D005210 ORTHO05D010080 9.4e-20 101.3 64 82.8
Hma1.2p1_0038F.1_g024120 Hydrangea macrophylla HOM05D005210 ORTHO05D010080 3.0e-18 96.3 69 76.8
CDE02G1246 Ceratophyllum demersum HOM05D001325 ORTHO05D010080 9.8e-17 91.3 109 52.3
Nitab4.5_0000172g1800 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.3e-13 80.9 99 53.5
arahy.Tifrunner.gnm1.ann1.03NBHP Arachis hypogaea HOM05D005210 ORTHO05D010080 6.6e-13 78.6 91 53.8
CsaV3_5G017030 Cucumis sativus L. HOM05D005210 ORTHO05D010080 4.3e-12 75.9 64 62.5
CAN.G1.22 Capsicum annuum HOM05D024148 ORTHO05D024823 7.3e-12 75.1 39 92.3
Ca_08792_v3 Cicer arietinum L. HOM05D000255 ORTHO05D028863 7.3e-12 75.1 75 60.0
arahy.Tifrunner.gnm1.ann1.ZXP4DA Arachis hypogaea HOM05D005210 ORTHO05D010080 3.6e-11 72.8 94 54.3
Ciclev10017151m.g Citrus clementina HOM05D005210 ORTHO05D010080 3.0e-10 69.7 101 53.5
CAN.G505.4 Capsicum annuum HOM05D005210 ORTHO05D010080 4.0e-10 69.3 46 76.1
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 5.2e-10 68.9 36 91.7
Nitab4.5_0000345g0130 Nicotiana tabacum HOM05D005210 ORTHO05D010080 2.0e-09 67.0 70 60.0
Lalb_Chr17g0337341 Lupinus albus HOM05D005210 ORTHO05D010080 1.6e-06 57.4 80 60.0


User provided reference genes

Program Settings