Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G061921 Populus trichocarpa HOM05D003666 ORTHO05D004770 6.7e-105 384.0 195 100.0
ATMG00580 Arabidopsis thaliana HOM05D003666 ORTHO05D004770 3.3e-88 328.6 170 97.6
LjContig00439g0017912 Lotus japonicus HOM05D003666 ORTHO05D004770 1.3e-87 326.6 206 84.0
LjContig00439g0019818 Lotus japonicus HOM05D003666 ORTHO05D004770 1.3e-87 326.6 206 84.0
DCAR_032432 Daucus carota HOM05D003666 ORTHO05D004770 3.5e-85 318.5 170 94.7
PSO210G0035 Papaver somniferum HOM05D003666 ORTHO05D004770 1.5e-83 313.2 170 93.5
Sed0020058 Sechium edule HOM05D003666 ORTHO05D004770 9.4e-83 310.5 185 87.6
Lsat_1_v5_gn_4_39621 Lactuca sativa HOM05D003666 ORTHO05D004770 1.4e-81 306.6 192 85.4
BraSC177t45766Z Brassica rapa HOM05D003666 ORTHO05D004770 4.0e-81 305.1 182 87.9
BraSC77t46648Z Brassica rapa HOM05D003666 ORTHO05D004770 4.0e-81 305.1 182 87.9
HanXRQMTg0579201 Helianthus annuus HOM05D003666 ORTHO05D004770 5.7e-80 301.2 192 83.9
Nn1g10170 Nelumbo nucifera HOM05D003666 ORTHO05D004770 5.4e-78 294.7 159 93.7
HanXRQChr02g0045121 Helianthus annuus HOM05D003666 ORTHO05D004770 2.0e-77 292.7 192 82.3
Lj2A1228G69 Lonicera japonica HOM05D003666 ORTHO05D004770 3.4e-72 275.4 148 95.9
Sp3g25750 Schrenkiella parvula HOM05D003666 ORTHO05D004770 6.6e-68 261.2 137 97.8
RcHm_v2.0_MTg0498651 Rosa chinensis HOM05D003666 ORTHO05D004770 1.6e-66 256.5 151 89.4
Ah.10g028210 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.1e-66 256.1 162 85.2
Ah.10g028760 Amaranthus hybridus HOM05D003666 ORTHO05D004770 2.1e-66 256.1 162 85.2
arahy.Tifrunner.gnm1.ann1.DQZY30 Arachis hypogaea HOM05D003666 ORTHO05D004770 2.1e-66 256.1 145 93.1
arahy.Tifrunner.gnm1.ann1.G61VPX Arachis hypogaea HOM05D003666 ORTHO05D004770 2.1e-66 256.1 145 93.1
AUR62042334 Chenopodium quinoa HOM05D003666 ORTHO05D004770 2.1e-66 256.1 162 85.2
Solyc00g013180.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 2.1e-66 256.1 139 95.0
AL3G44310 Arabidopsis lyrata HOM05D003666 ORTHO05D004770 2.6e-64 249.2 129 98.4
Medtr0082s0060 Medicago truncatula HOM05D003666 ORTHO05D004770 9.8e-64 247.3 133 96.2
Aa31csc553G50 Aethionema arabicum HOM05D003666 ORTHO05D004770 1.3e-63 246.9 137 94.2
Lalb_Chr00c24g0407361 Lupinus albus HOM05D003666 ORTHO05D004770 2.2e-63 246.1 129 97.7
Lalb_Chr01g0010981 Lupinus albus HOM05D003666 ORTHO05D004770 2.2e-63 246.1 129 97.7
Solyc00g500187.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.2e-61 240.4 129 95.3
Solyc00g500251.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.2e-61 240.4 129 95.3
Sopen11g018270 Solanum pennellii HOM05D003666 ORTHO05D004770 1.2e-61 240.4 129 95.3
CAN.G65.28 Capsicum annuum HOM05D003666 ORTHO05D004770 3.9e-60 235.3 129 93.8
Nitab4.5_0000172g0090 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.1e-59 233.8 152 81.6
unitig_87.g28023 Utricularia gibba HOM05D003666 ORTHO05D004770 1.1e-59 233.8 129 92.2
Nn1g09940 Nelumbo nucifera HOM05D003666 ORTHO05D004770 4.3e-59 231.9 129 92.2
Lalb_Chr06g0172221 Lupinus albus HOM05D003666 ORTHO05D004770 1.2e-58 230.3 129 93.0
Lalb_Chr06g0172341 Lupinus albus HOM05D003666 ORTHO05D004770 1.2e-58 230.3 129 93.0
Thhalv10015949m.g Eutrema salsugineum HOM05D003666 ORTHO05D004770 1.6e-58 229.9 234 59.8
Sed0023789 Sechium edule HOM05D003666 ORTHO05D004770 8.9e-57 224.2 185 70.8
Gohir.D09G016300 Gossypium hirsutum HOM05D003666 ORTHO05D004770 2.6e-56 222.6 127 91.3
Nitab4.5_0006085g0010 Nicotiana tabacum HOM05D003666 ORTHO05D004770 3.4e-56 222.2 138 81.9
SEGI_24024 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 2.2e-55 219.5 159 74.2
SEGI_34311 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 2.2e-55 219.5 159 74.2
Psat4g185400 Pisum sativum HOM05D003666 ORTHO05D004770 7.0e-54 214.5 129 85.3
SHI12194 Sapria himalayana HOM05D003666 ORTHO05D004770 9.5e-51 204.1 147 75.5
Lsat_1_v5_gn_3_108200 Lactuca sativa HOM05D003666 ORTHO05D004770 3.1e-49 199.1 136 80.9
Gohir.A12G076865 Gossypium hirsutum HOM05D003666 ORTHO05D004770 2.6e-48 196.1 109 92.7
Nitab4.5_0000172g1740 Nicotiana tabacum HOM05D003666 ORTHO05D004770 1.9e-46 189.9 153 68.6
Hma1.2p1_0257F.1_g103600 Hydrangea macrophylla HOM05D003666 ORTHO05D004770 5.6e-43 178.3 99 93.9
arahy.Tifrunner.gnm1.ann1.A5I0RB Arachis hypogaea HOM05D003666 ORTHO05D004770 1.2e-42 177.2 126 81.7
Nitab4.5_0001788g0230 Nicotiana tabacum HOM05D003666 ORTHO05D004770 2.1e-42 176.4 100 92.0
Peaxi162Scf01767g00002 Petunia axillaris HOM05D003666 ORTHO05D004770 8.9e-41 171.0 91 96.7
TPR.G18511 Trifolium pratense HOM05D003666 ORTHO05D004770 4.4e-40 168.7 95 90.5
Peaxi162Scf00147g00311 Petunia axillaris HOM05D003666 ORTHO05D004770 7.3e-35 151.4 82 95.1
BolC4t23491H Brassica oleracea HOM05D003666 ORTHO05D004770 1.2e-32 144.1 87 87.4
CAN.G1.7 Capsicum annuum HOM05D003666 ORTHO05D004770 7.6e-32 141.4 80 88.8
Haze_26858 Corylus avellana HOM05D000729 ORTHO05D001063 9.9e-32 141.0 149 49.7
Peaxi162Scf00530g00005 Petunia axillaris HOM05D003666 ORTHO05D004770 9.9e-32 141.0 77 93.5
SHI21047 Sapria himalayana HOM05D003666 ORTHO05D004770 6.4e-31 138.3 89 83.1
CAN.G85.17 Capsicum annuum HOM05D003666 ORTHO05D004770 7.1e-30 134.8 77 89.6
CAN.G1001.36 Capsicum annuum HOM05D003666 ORTHO05D004770 3.5e-29 132.5 78 87.2
CSS0015485 Camellia sinensis var. sinensis HOM05D003666 ORTHO05D004770 1.5e-27 127.1 164 50.0
Haze_27149 Corylus avellana HOM05D003666 ORTHO05D004770 1.6e-26 123.6 166 39.8
SalBow1G6983 Salvia bowleyana HOM05D003666 ORTHO05D004770 7.6e-24 114.8 116 58.6
Lalb_Chr00c54g0413571 Lupinus albus HOM05D003666 ORTHO05D004770 2.8e-18 96.3 48 97.9
SMO053G0008 Selaginella moellendorffii HOM05D003666 ORTHO05D004770 1.8e-17 93.6 139 46.8
MELO3C030345.2 Cucumis melo HOM05D003666 ORTHO05D004770 6.9e-17 91.7 55 89.1
Oeu022812.1 Olea europaea HOM05D003666 ORTHO05D004770 6.4e-15 85.1 71 70.4
SEGI_03857 Sequoiadendron giganteum HOM05D003666 ORTHO05D004770 1.4e-14 84.0 65 70.8
SHI36045 Sapria himalayana HOM05D003666 ORTHO05D004770 4.2e-14 82.4 40 95.0
Solyc10g062000.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 1.6e-13 80.5 51 78.4
DCAR_032536 Daucus carota HOM05D001200 ORTHO05D002731 2.1e-13 80.1 197 29.4
Ciclev10027631m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.7e-13 79.7 173 28.9
Ciclev10027650m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.7e-13 79.7 173 28.9
SEGI_13011 Sequoiadendron giganteum HOM05D001200 ORTHO05D002731 2.7e-13 79.7 108 39.8
Medtr4g006120 Medicago truncatula HOM05D001200 ORTHO05D002731 4.6e-13 79.0 181 30.9
Medtr4g050950 Medicago truncatula HOM05D001200 ORTHO05D002731 4.6e-13 79.0 181 30.9
EL10As15g24100 Beta vulgaris HOM05D001200 ORTHO05D002731 1.0e-12 77.8 178 30.9
EL10As15g24137 Beta vulgaris HOM05D001200 ORTHO05D002731 1.0e-12 77.8 178 30.9
Nn064s42212 Nelumbo nucifera HOM05D001200 ORTHO05D002731 1.3e-12 77.4 153 31.4
Phvul.002G050301 Phaseolus vulgaris HOM05D001200 ORTHO05D002731 1.3e-12 77.4 197 29.4
RcHm_v2.0_Chr5g0043051 Rosa chinensis HOM05D001200 ORTHO05D002731 1.8e-12 77.0 198 29.3
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 2.3e-12 76.6 178 29.8
RcHm_v2.0_Chr5g0017231 Rosa chinensis HOM05D001200 ORTHO05D002731 2.3e-12 76.6 198 28.8
PGSC0003DMG400020539 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.3e-12 76.6 181 29.8
PGSC0003DMG401011339 Solanum tuberosum HOM05D001200 ORTHO05D002731 2.3e-12 76.6 181 29.8
HanXRQChr11g0323741 Helianthus annuus HOM05D001200 ORTHO05D002731 3.0e-12 76.3 163 30.7
CARHR282420 Cardamine hirsuta HOM05D001200 ORTHO05D002731 5.1e-12 75.5 198 28.3
BcaC03g16699 Brassica carinata HOM05D001200 ORTHO05D002731 6.7e-12 75.1 170 28.2
C09p24620 Brassica napus HOM05D001200 ORTHO05D002731 6.7e-12 75.1 170 28.2
BolSC29t60504H Brassica oleracea HOM05D001200 ORTHO05D002731 6.7e-12 75.1 170 28.2
BolSC35t60702H Brassica oleracea HOM05D001200 ORTHO05D002731 6.7e-12 75.1 170 28.2
BolSC37t60791H Brassica oleracea HOM05D001200 ORTHO05D002731 6.7e-12 75.1 170 28.2
BraSC179t45776Z Brassica rapa HOM05D001200 ORTHO05D002731 6.7e-12 75.1 170 28.2
BraSC59t46549Z Brassica rapa HOM05D001200 ORTHO05D002731 6.7e-12 75.1 170 28.2
C09p40370 Brassica napus HOM05D001200 ORTHO05D002731 8.7e-12 74.7 172 27.9
Gohir.1Z049731 Gossypium hirsutum HOM05D001200 ORTHO05D002731 8.7e-12 74.7 156 29.5
Gohir.A02G134201 Gossypium hirsutum HOM05D001200 ORTHO05D010401 8.7e-12 74.7 156 29.5
Medtr0002s0170 Medicago truncatula HOM05D001200 ORTHO05D002731 8.7e-12 74.7 195 28.7
HanXRQChr00c0196g0572481 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-11 74.3 153 31.4
HanXRQChr00c0690g0576761 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-11 74.3 153 31.4
HanXRQChr02g0059711 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-11 74.3 153 31.4
HanXRQChr05g0152431 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-11 74.3 153 31.4
HanXRQChr06g0183001 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-11 74.3 153 31.4
HanXRQChr09g0258521 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-11 74.3 153 31.4
HanXRQCPg0580351 Helianthus annuus HOM05D001200 ORTHO05D002731 1.1e-11 74.3 153 31.4
Lj2P1238T97 Lonicera japonica HOM05D001200 ORTHO05D002731 1.9e-11 73.6 153 29.4
HanXRQChr03g0073091 Helianthus annuus HOM05D001200 ORTHO05D002731 4.3e-11 72.4 152 30.9
Sed0012006 Sechium edule HOM05D001200 ORTHO05D002731 4.3e-11 72.4 178 28.7
Ciclev10013974m.g Citrus clementina HOM05D001200 ORTHO05D002731 9.6e-11 71.2 150 30.0
TAR022G0002 Trochodendron aralioides HOM05D003666 ORTHO05D004770 9.6e-11 71.2 99 41.4
SalBow1G7634 Salvia bowleyana HOM05D001200 ORTHO05D002731 1.3e-10 70.9 153 28.8
Nitab4.5_0001342g0130 Nicotiana tabacum HOM05D001200 ORTHO05D002731 4.8e-10 68.9 199 28.1
Gohir.A01G143400 Gossypium hirsutum HOM05D001200 ORTHO05D002731 8.2e-10 68.2 177 26.0
CANSAT16G0036 Cannabis sativa HOM05D003666 ORTHO05D004770 2.4e-09 66.6 33 87.9
Lj2A1223G71 Lonicera japonica HOM05D010562 ORTHO05D016078 3.1e-09 66.2 30 96.7
Lj2A1228T88 Lonicera japonica HOM05D010562 ORTHO05D016078 3.1e-09 66.2 30 96.7
ClCG10G004730 Citrullus lanatus HOM05D010562 ORTHO05D016078 1.2e-08 64.3 30 93.3
QL93p0790_0012 Quercus lobata HOM05D003666 ORTHO05D004770 1.5e-08 63.9 64 53.1
arahy.Tifrunner.gnm1.ann1.2QK9Z7 Arachis hypogaea HOM05D001200 ORTHO05D002731 1.0e-07 61.2 133 30.8
HanXRQChr00c0328g0573601 Helianthus annuus HOM05D001200 ORTHO05D002731 1.7e-07 60.5 77 37.7
SHI01159 Sapria himalayana HOM05D003666 ORTHO05D004770 2.2e-07 60.1 56 58.9
Lsat_1_v5_gn_1_14200 Lactuca sativa HOM05D001200 ORTHO05D002731 3.8e-07 59.3 72 38.9
Solyc10g045765.1 Solanum lycopersicum HOM05D003666 ORTHO05D004770 4.9e-07 58.9 35 74.3
Lalb_Chr07g0191751 Lupinus albus HOM05D001200 ORTHO05D002731 8.4e-07 58.2 139 32.4
BolC2t10611H Brassica oleracea HOM05D001200 ORTHO05D002731 1.1e-06 57.8 117 29.1
SMO086G0020 Selaginella moellendorffii HOM05D001200 ORTHO05D002731 1.1e-06 57.8 154 29.9
Peaxi162Scf01164g00035 Petunia axillaris HOM05D001200 ORTHO05D002731 1.4e-06 57.4 221 24.4
Hund08793 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund12716 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund12843 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund23968 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund27631 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund27678 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund27755 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund27831 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28330 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28438 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28448 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28536 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28587 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28596 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28613 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28880 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28937 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28946 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28951 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28954 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28961 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28974 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund28979 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29026 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29089 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29109 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29179 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29186 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29244 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29247 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29254 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29261 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29273 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29277 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29281 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29285 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29288 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29316 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29434 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29453 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29499 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29654 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29713 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29755 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29814 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund29818 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund30036 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund30039 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund30120 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund30177 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund30365 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
Hund30388 Selenicereus undatus HOM05D001200 ORTHO05D002731 1.9e-06 57.0 81 35.8
C06p42250 Brassica napus HOM05D001200 ORTHO05D002731 2.5e-06 56.6 77 33.8
Ciclev10013969m.g Citrus clementina HOM05D001200 ORTHO05D002731 2.5e-06 56.6 74 35.1
Medtr7g021720 Medicago truncatula HOM05D001200 ORTHO05D002731 2.5e-06 56.6 181 27.1
Hund28850 Selenicereus undatus HOM05D001200 ORTHO05D002731 2.5e-06 56.6 81 35.8
Hund29251 Selenicereus undatus HOM05D001200 ORTHO05D002731 3.2e-06 56.2 81 35.8
BolSC46t60960H Brassica oleracea HOM05D001200 ORTHO05D002731 4.2e-06 55.8 74 33.8
Solyc11g021213.1 Solanum lycopersicum HOM05D001200 ORTHO05D002731 9.3e-06 54.7 117 28.2


User provided reference genes

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