Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.7e-100 369.4 199 100.0
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.7e-100 369.4 199 100.0
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 9.3e-86 320.5 199 88.4
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 2.5e-78 295.8 199 83.4
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 2.5e-78 295.8 195 84.1
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 2.5e-78 295.8 195 84.1
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 9.3e-78 293.9 199 83.9
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 9.3e-78 293.9 199 83.9
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.2e-77 293.5 199 82.4
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.2e-77 293.5 199 82.4
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 7.9e-77 290.8 195 82.6
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 7.9e-77 290.8 199 81.9
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 3.9e-76 288.5 199 80.4
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 5.1e-76 288.1 199 80.9
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 8.7e-76 287.3 195 82.6
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-75 287.0 199 81.9
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 1.1e-75 287.0 199 81.9
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.5e-75 286.6 190 85.3
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 1.9e-75 286.2 190 84.7
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 1.9e-75 286.2 190 84.7
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 1.9e-75 286.2 190 84.7
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 2.5e-75 285.8 199 81.9
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 2.5e-75 285.8 189 85.2
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 4.3e-75 285.0 197 81.2
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 4.3e-75 285.0 188 84.0
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 4.3e-75 285.0 188 84.0
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 7.4e-75 284.3 189 85.2
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 7.4e-75 284.3 189 85.2
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.3e-74 283.5 197 80.7
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 2.1e-74 282.7 195 82.6
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.8e-74 282.3 190 82.1
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 2.8e-74 282.3 180 85.6
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 3.7e-74 282.0 190 82.1
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 6.3e-74 281.2 189 84.7
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 8.2e-74 280.8 195 82.1
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 8.2e-74 280.8 189 84.7
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 3.4e-72 275.4 190 80.5
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 5.9e-72 274.6 189 80.4
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 7.6e-72 274.2 189 80.4
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 7.2e-70 267.7 203 74.9
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 1.0e-68 263.8 174 83.3
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 8.7e-68 260.8 180 82.2
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 7.4e-67 257.7 182 80.2
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 4.1e-65 251.9 179 77.1
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 5.3e-65 251.5 166 84.3
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-64 250.0 164 85.4
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 2.6e-64 249.2 158 86.7
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 6.5e-63 244.6 171 79.5
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 2.7e-61 239.2 146 89.7
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.0e-59 233.0 149 85.9
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 2.0e-59 233.0 149 85.9
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 9.7e-59 230.7 156 81.4
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 2.2e-58 229.6 155 81.3
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.7e-58 228.8 152 84.9
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.9e-56 221.5 158 79.7
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 1.9e-54 216.5 150 79.3
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 3.2e-54 215.7 132 87.1
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.2e-54 215.3 150 78.7
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 3.6e-53 212.2 154 77.3
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.5e-51 206.8 184 67.4
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.5e-51 206.8 184 67.4
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.5e-51 206.8 184 67.4
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.8e-50 202.6 137 80.3
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 8.2e-50 201.1 184 65.2
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 9.1e-49 197.6 143 74.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.6e-48 196.8 122 87.7
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 1.6e-48 196.8 122 87.7
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 4.5e-48 195.3 144 75.7
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 5.0e-47 191.8 131 79.4
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 5.0e-47 191.8 131 79.4
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 2.5e-46 189.5 148 73.0
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 1.4e-44 183.7 119 82.4
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.0e-44 182.6 122 81.1
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.2e-44 181.8 187 61.5
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.0e-43 179.9 126 78.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 7.5e-43 177.9 122 80.3
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 2.9e-39 166.0 115 81.7
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 2.7e-37 159.5 103 82.5
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 7.0e-33 144.8 99 81.8
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 7.0e-33 144.8 97 85.6
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 3.5e-32 142.5 99 77.8
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 7.7e-32 141.4 89 84.3
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 2.3e-28 129.8 86 84.9
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 5.2e-28 128.6 84 84.5
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.8e-27 124.4 88 81.8
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 2.0e-24 116.7 81 79.0
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 2.7e-24 116.3 75 86.7
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-22 108.6 77 75.3
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.6e-21 107.1 76 75.0
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.1e-21 106.7 79 70.9
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 6.8e-20 101.7 85 68.2
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 6.8e-20 101.7 85 68.2
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 4.4e-19 99.0 73 74.0
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 7.5e-19 98.2 64 82.8
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.7e-18 95.9 56 91.1
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 2.4e-17 93.2 77 74.0
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 9.2e-17 91.3 65 73.8
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.7e-16 89.7 70 74.3
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.3e-15 87.4 65 72.3
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 8.6e-15 84.7 95 55.8
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.5e-11 73.9 60 65.0
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 4.4e-11 72.4 68 57.4
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 9.8e-11 71.2 83 51.8
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 8.3e-10 68.2 52 69.2
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 3.2e-09 66.2 62 64.5
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 4.1e-09 65.9 43 86.0
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.5e-08 62.8 36 86.1
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 6.6e-07 58.5 39 74.4


User provided reference genes

Program Settings