Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G057800 Populus trichocarpa HOM05D003676 ORTHO05D004262 4.0e-144 515.0 307 100.0
Potri.005G114100 Populus trichocarpa HOM05D003676 ORTHO05D004262 1.3e-99 367.1 376 69.1
Sabra05G0093400 Salix brachista HOM05D003676 ORTHO05D004262 5.8e-95 351.7 377 63.9
QL06p032755 Quercus lobata HOM05D003676 ORTHO05D004262 3.2e-69 266.2 386 53.9
Manes.01G145700 Manihot esculenta HOM05D003676 ORTHO05D004262 5.7e-66 255.4 378 53.7
CSS0021991 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 4.6e-60 235.7 385 50.6
CiPaw.07G058500 Carya illinoinensis HOM05D003676 ORTHO05D004262 1.0e-59 234.6 389 52.4
Duzib187G0981 Durio zibethinus HOM05D003676 ORTHO05D004262 1.0e-59 234.6 381 50.9
CSS0022685 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 3.9e-59 232.6 385 48.6
Cfa006972 Carpinus fangiana HOM05D003676 ORTHO05D004262 2.0e-58 230.3 371 55.3
Dinv40087 Davidia involucrata HOM05D003676 ORTHO05D004262 4.4e-58 229.2 384 46.4
Sopen02g028680 Solanum pennellii HOM05D003676 ORTHO05D004262 5.7e-58 228.8 375 48.0
Prupe.7G168100 Prunus persica HOM05D003676 ORTHO05D004262 2.2e-57 226.9 398 52.0
Manes.02G104500 Manihot esculenta HOM05D003676 ORTHO05D004262 4.8e-57 225.7 348 50.6
MD15G1246000 Malus domestica HOM05D003676 ORTHO05D004262 8.2e-57 224.9 390 48.5
Dinv33627 Davidia involucrata HOM05D003676 ORTHO05D004262 1.1e-56 224.6 377 46.2
Cpa.g.sc6.251 Carica papaya HOM05D003676 ORTHO05D004262 1.4e-56 224.2 374 51.6
CSS0018215 Camellia sinensis var. sinensis HOM05D003676 ORTHO05D004262 2.4e-56 223.4 379 52.2
TWI53G0168 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 4.1e-56 222.6 359 56.0
Nitab4.5_0005660g0010 Nicotiana tabacum HOM05D003676 ORTHO05D004262 9.1e-56 221.5 372 51.6
Solyc02g083890.4 Solanum lycopersicum HOM05D003676 ORTHO05D004262 9.1e-56 221.5 375 45.1
MD02G1132500 Malus domestica HOM05D003676 ORTHO05D004262 1.5e-55 220.7 396 45.2
Lj2A468T73 Lonicera japonica HOM05D003676 ORTHO05D004262 2.0e-55 220.3 387 46.0
Actinidia30997 Actinidia chinensis HOM05D003676 ORTHO05D004262 2.6e-55 219.9 362 45.3
Nitab4.5_0003382g0020 Nicotiana tabacum HOM05D003676 ORTHO05D004262 3.4e-55 219.5 374 50.3
RcHm_v2.0_Chr2g0099451 Rosa chinensis HOM05D003676 ORTHO05D004262 3.8e-54 216.1 390 45.4
CsaV3_3G000800 Cucumis sativus L. HOM05D003676 ORTHO05D004262 1.9e-53 213.8 385 48.8
DCAR_016607 Daucus carota HOM05D003676 ORTHO05D004262 1.9e-53 213.8 379 49.1
Cc07_g10720 Coffea canephora HOM05D003676 ORTHO05D004262 3.2e-53 213.0 389 47.0
Lj4g0000664 Lotus japonicus HOM05D003676 ORTHO05D004262 9.4e-53 211.5 376 45.5
Thecc.01G019000 Theobroma cacao HOM05D003676 ORTHO05D004262 1.6e-52 210.7 381 47.8
Eucgr.I02350 Eucalyptus grandis HOM05D003676 ORTHO05D004262 2.1e-52 210.3 387 47.8
MELO3C013767.2 Cucumis melo HOM05D003676 ORTHO05D004262 6.1e-52 208.8 393 47.1
vmacro18414 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 7.9e-52 208.4 379 46.4
Atru.chr3.798 Acer truncatum HOM05D003676 ORTHO05D004262 1.0e-51 208.0 403 44.7
Duzib264G0036 Durio zibethinus HOM05D003676 ORTHO05D004262 1.0e-51 208.0 383 46.5
TAR376G0994 Trochodendron aralioides HOM05D003676 ORTHO05D004262 2.3e-51 206.8 375 44.0
ClCG10G000750 Citrullus lanatus HOM05D003676 ORTHO05D004262 3.9e-51 206.1 384 49.2
TAR628G0168 Trochodendron aralioides HOM05D003676 ORTHO05D004262 3.9e-51 206.1 366 50.5
Ciclev10025949m.g Citrus clementina HOM05D003676 ORTHO05D004262 6.7e-51 205.3 387 43.9
Glyma.01G166300 Glycine max HOM05D003676 ORTHO05D004262 6.7e-51 205.3 366 46.4
FvH4_1g11840 Fragaria vesca HOM05D003676 ORTHO05D004262 8.8e-51 204.9 400 49.0
Hund16490 Selenicereus undatus HOM05D003676 ORTHO05D004262 8.8e-51 204.9 390 44.6
Glyma.16G128800 Glycine max HOM05D003676 ORTHO05D004262 1.5e-50 204.1 373 46.9
FAN19G1818 Fragaria x ananassa HOM05D003676 ORTHO05D004262 4.4e-50 202.6 391 49.1
arahy.Tifrunner.gnm1.ann1.3LB61T Arachis hypogaea HOM05D003676 ORTHO05D004262 5.7e-50 202.2 381 47.8
arahy.Tifrunner.gnm1.ann1.CCI0LY Arachis hypogaea HOM05D003676 ORTHO05D004262 7.4e-50 201.8 382 47.4
FAN26G1220 Fragaria x ananassa HOM05D003676 ORTHO05D004262 9.7e-50 201.4 389 46.8
Lalb_Chr05g0212401 Lupinus albus HOM05D003676 ORTHO05D004262 1.3e-49 201.1 375 43.2
VMungo0251G0225 Vigna mungo HOM05D003676 ORTHO05D004262 1.3e-49 201.1 374 48.7
PGSC0003DMG400003640 Solanum tuberosum HOM05D003676 ORTHO05D004262 1.7e-49 200.7 368 43.8
Hma1.2p1_0956F.1_g241320 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 3.7e-49 199.5 415 42.4
Medtr8g075950 Medicago truncatula HOM05D003676 ORTHO05D004262 3.7e-49 199.5 370 49.5
SalBow3G1193 Salvia bowleyana HOM05D003676 ORTHO05D004262 3.7e-49 199.5 335 49.6
Peaxi162Scf00083g00320 Petunia axillaris HOM05D003676 ORTHO05D004262 8.2e-49 198.4 376 44.4
Lj4A218T52 Lonicera japonica HOM05D003676 ORTHO05D004262 1.1e-48 198.0 350 44.0
Sed0017342 Sechium edule HOM05D003676 ORTHO05D004262 1.1e-48 198.0 375 45.6
FAN23G0443 Fragaria x ananassa HOM05D003676 ORTHO05D004262 1.8e-48 197.2 389 47.8
Hund14045 Selenicereus undatus HOM05D003676 ORTHO05D004262 2.4e-48 196.8 388 42.3
CAN.G1671.14 Capsicum annuum HOM05D003676 ORTHO05D004262 4.1e-48 196.1 384 47.9
MSTRG.2714 Avicennia marina HOM05D003676 ORTHO05D004262 9.1e-48 194.9 377 48.5
CARHR281500 Cardamine hirsuta HOM05D003676 ORTHO05D004262 9.1e-48 194.9 361 44.3
TAR381G0332 Trochodendron aralioides HOM05D003676 ORTHO05D004262 9.1e-48 194.9 386 47.4
Glyma.02G048700 Glycine max HOM05D003676 ORTHO05D004262 2.6e-47 193.4 380 47.6
Gohir.D12G060000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.6e-47 193.4 366 49.5
Gorai.008G063100 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.6e-47 193.4 366 48.6
Phvul.003G262100 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 2.6e-47 193.4 374 48.7
Ca_25824_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 4.5e-47 192.6 346 50.0
PGR119G1864 Punica granatum HOM05D003676 ORTHO05D004262 7.7e-47 191.8 398 46.0
Hma1.2p1_0258F.1_g104145 Hydrangea macrophylla HOM05D003676 ORTHO05D004262 1.3e-46 191.0 361 44.0
TPR.G30058 Trifolium pratense HOM05D003676 ORTHO05D004262 1.7e-46 190.7 375 45.1
Psat4g099080 Pisum sativum HOM05D003676 ORTHO05D004262 2.9e-46 189.9 378 42.6
PSO675G7127 Papaver somniferum HOM05D003676 ORTHO05D004262 1.1e-45 188.0 374 43.9
Rhsim10G0212200 Rhododendron simsii HOM05D003676 ORTHO05D004262 1.5e-45 187.6 394 45.7
Gohir.A11G175400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.5e-45 186.8 373 41.0
Gohir.A12G059600 Gossypium hirsutum HOM05D003676 ORTHO05D004262 2.5e-45 186.8 366 48.9
Glyma.11G077200 Glycine max HOM05D003676 ORTHO05D004262 7.2e-45 185.3 364 50.3
COL.COLO4_21910 Corchorus olitorius HOM05D003676 ORTHO05D004262 6.1e-44 182.2 375 41.1
Gohir.D11G182900 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.1e-44 182.2 379 41.2
PSO541G5658 Papaver somniferum HOM05D003676 ORTHO05D004262 8.0e-44 181.8 373 43.2
AT5G66230 Arabidopsis thaliana HOM05D003676 ORTHO05D003783 1.0e-43 181.4 367 46.3
Oeu063192.2 Olea europaea HOM05D003676 ORTHO05D004262 1.0e-43 181.4 360 40.8
TWI09G1351 Tripterygium wilfordii HOM05D003676 ORTHO05D004262 3.0e-43 179.9 371 48.5
Medtr5g022010 Medicago truncatula HOM05D003676 ORTHO05D004262 3.3e-42 176.4 336 44.9
Nn5g30150 Nelumbo nucifera HOM05D003676 ORTHO05D004262 3.3e-42 176.4 397 43.3
Gorai.007G194900 Gossypium raimondii HOM05D003676 ORTHO05D004262 4.4e-42 176.0 377 40.6
Actinidia17444 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.7e-42 175.6 391 40.7
AUR62003369 Chenopodium quinoa HOM05D003676 ORTHO05D004262 5.7e-42 175.6 352 41.8
Rhsim08G0033700 Rhododendron simsii HOM05D003676 ORTHO05D004262 7.5e-42 175.3 379 42.5
MBI05_g37447_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.3e-41 174.5 380 39.5
CANSAT01G0038 Cannabis sativa HOM05D003676 ORTHO05D004262 2.8e-41 173.3 387 45.2
Aa31LG1G14730 Aethionema arabicum HOM05D003676 ORTHO05D004262 8.2e-41 171.8 364 44.2
Nn1g05889 Nelumbo nucifera HOM05D003676 ORTHO05D004262 1.1e-40 171.4 373 43.2
Thhalv10004614m.g Eutrema salsugineum HOM05D003676 ORTHO05D004262 2.4e-40 170.2 367 39.5
Oeu012589.1 Olea europaea HOM05D003676 ORTHO05D004262 3.1e-40 169.9 357 41.7
Psat2g154560 Pisum sativum HOM05D003676 ORTHO05D004262 4.1e-40 169.5 330 49.7
Oeu048461.1 Olea europaea HOM05D003676 ORTHO05D004262 5.3e-40 169.1 350 46.6
Carub.0008s2827 Capsella rubella HOM05D003676 ORTHO05D004262 1.2e-39 167.9 365 41.6
A09p10110 Brassica napus HOM05D003676 ORTHO05D004262 4.5e-39 166.0 362 43.9
Gohir.A02G170700 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.9e-39 165.6 439 36.9
C09p11980 Brassica napus HOM05D003676 ORTHO05D004262 1.3e-38 164.5 360 45.0
BraA09t36654Z Brassica rapa HOM05D003676 ORTHO05D004262 5.0e-38 162.5 362 44.5
BolC9t54086H Brassica oleracea HOM05D003676 ORTHO05D004262 6.5e-38 162.2 366 44.8
TPR.G18183 Trifolium pratense HOM05D003676 ORTHO05D004262 6.5e-38 162.2 344 45.3
Gohir.D03G009400 Gossypium hirsutum HOM05D003676 ORTHO05D004262 1.1e-37 161.4 441 36.1
Sc07g0000980 Simmondsia chinensis HOM05D003676 ORTHO05D004262 3.2e-37 159.8 332 46.4
AUR62029464 Chenopodium quinoa HOM05D003676 ORTHO05D004262 4.2e-37 159.5 353 39.4
Phvul.002G108800 Phaseolus vulgaris HOM05D003676 ORTHO05D004262 1.2e-36 157.9 316 40.8
FAN28G1902 Fragaria x ananassa HOM05D003676 ORTHO05D004262 2.1e-36 157.1 389 46.3
Sp2g30470 Schrenkiella parvula HOM05D003676 ORTHO05D004262 2.1e-36 157.1 337 45.1
Ca_22374_v3 Cicer arietinum L. HOM05D003676 ORTHO05D004262 1.4e-35 154.5 372 37.4
Gorai.003G009600 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.3e-35 153.7 441 35.8
Aqoxy6G02292 Aquilegia oxysepala HOM05D003676 ORTHO05D004262 4.0e-35 152.9 393 35.9
THA.LOC104819178 Tarenaya hassleriana HOM05D003676 ORTHO05D004262 4.0e-35 152.9 374 38.2
Lalb_Chr09g0321731 Lupinus albus HOM05D003676 ORTHO05D004262 8.8e-35 151.8 324 39.5
GSVIVG01018782001 Vitis vinifera HOM05D003676 ORTHO05D004262 3.4e-34 149.8 263 45.2
Gohir.D11G183000 Gossypium hirsutum HOM05D003676 ORTHO05D004262 5.7e-34 149.1 316 39.9
Gorai.007G195000 Gossypium raimondii HOM05D003676 ORTHO05D004262 6.3e-33 145.6 316 38.3
Actinidia22976 Actinidia chinensis HOM05D003676 ORTHO05D004262 5.4e-32 142.5 297 44.8
HanXRQChr15g0487251 Helianthus annuus HOM05D003676 ORTHO05D004262 5.4e-32 142.5 330 38.5
Haze_03763 Corylus avellana HOM05D003676 ORTHO05D004262 9.1e-32 141.7 129 72.1
unitig_736.g22721 Utricularia gibba HOM05D003676 ORTHO05D004262 1.2e-31 141.4 350 41.1
ECA232G1625 Erigeron canadensis HOM05D003676 ORTHO05D004262 1.6e-31 141.0 353 36.3
MBI05_g30743_MAGBIO Magnolia biondii HOM05D003676 ORTHO05D004262 1.6e-31 141.0 359 35.9
AL5G31630 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.5e-31 139.8 320 38.8
SGA_v2.0_scaffold78G25382 Striga asiatica HOM05D003676 ORTHO05D004262 8.5e-30 135.2 339 36.9
HanXRQChr09g0256601 Helianthus annuus HOM05D003676 ORTHO05D004262 4.7e-28 129.4 328 36.6
HPP92_020902 Vanilla planifolia HOM05D003676 ORTHO05D004262 5.2e-27 125.9 385 36.1
Migut.H01153 Erythranthe guttata HOM05D003676 ORTHO05D004262 2.6e-26 123.6 326 39.9
Ah.03g148760 Amaranthus hybridus HOM05D003676 ORTHO05D004262 4.4e-26 122.9 328 39.6
Lsat_1_v5_gn_4_146360 Lactuca sativa HOM05D003676 ORTHO05D004262 4.4e-26 122.9 332 34.0
Lsat_1_v5_gn_3_74521 Lactuca sativa HOM05D003676 ORTHO05D004262 2.2e-25 120.6 315 34.9
Sc16g0002190 Simmondsia chinensis HOM05D003676 ORTHO05D004262 6.3e-25 119.0 373 31.1
unitig_899.g14713 Utricularia gibba HOM05D003676 ORTHO05D004262 2.4e-24 117.1 327 32.1
SHI32179 Sapria himalayana HOM05D003676 ORTHO05D004262 3.1e-24 116.7 354 31.1
Sp5g10990 Schrenkiella parvula HOM05D003676 ORTHO05D004262 3.1e-24 116.7 334 34.7
Zm00001eb224920 Zea mays HOM05D003676 ORTHO05D004262 5.4e-24 115.9 391 33.5
Atru.chr1.3640 Acer truncatum HOM05D003676 ORTHO05D004262 1.7e-22 110.9 144 61.8
AL8G45300 Arabidopsis lyrata HOM05D003676 ORTHO05D004262 3.8e-22 109.8 232 42.7
Os10g0577400 Oryza sativa ssp. japonica HOM05D003676 ORTHO05D004262 4.3e-21 106.3 387 33.9
Nn1g05888 Nelumbo nucifera HOM05D003676 ORTHO05D004262 4.7e-20 102.8 342 29.8
AT3G51230 Arabidopsis thaliana HOM05D003676 ORTHO05D004262 6.1e-20 102.4 124 58.1
BcaNung04494 Brassica carinata HOM05D003676 ORTHO05D004262 1.0e-19 101.7 221 47.5
SEGI_09532 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-19 100.9 341 31.1
SEGI_21114 Sequoiadendron giganteum HOM05D003676 ORTHO05D004262 1.8e-19 100.9 341 31.1
ECA246G1385 Erigeron canadensis HOM05D003676 ORTHO05D004262 5.2e-19 99.4 214 39.3
Solyc02g062170.3 Solanum lycopersicum HOM05D003676 ORTHO05D004262 3.4e-18 96.7 284 31.7
CARHR160810 Cardamine hirsuta HOM05D003676 ORTHO05D004262 4.4e-18 96.3 122 54.1
CDE05G2608 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 4.4e-18 96.3 316 32.0
Carub.0005s1760 Capsella rubella HOM05D003676 ORTHO05D004262 7.5e-18 95.5 321 34.0
CDE05G0776 Ceratophyllum demersum HOM05D003676 ORTHO05D004262 2.9e-17 93.6 259 35.5
Gorai.010G060700 Gossypium raimondii HOM05D003676 ORTHO05D004262 2.9e-17 93.6 178 48.3
Nitab4.5_0002337g0030 Nicotiana tabacum HOM05D003676 ORTHO05D004262 1.4e-16 91.3 331 30.5
ATR0149G006 Amborella trichopoda HOM05D003676 ORTHO05D004262 2.4e-16 90.5 358 36.0
BcaC09g50089 Brassica carinata HOM05D003676 ORTHO05D004262 2.4e-16 90.5 124 54.0
C01p29220 Brassica napus HOM05D003676 ORTHO05D004262 2.4e-16 90.5 124 54.0
PGSC0003DMG400023891 Solanum tuberosum HOM05D003676 ORTHO05D004262 4.1e-16 89.7 254 35.0
Sopen02g013140 Solanum pennellii HOM05D003676 ORTHO05D004262 5.4e-16 89.4 284 30.6
DCAR_025998 Daucus carota HOM05D003676 ORTHO05D004262 9.2e-16 88.6 259 33.6
Zm00001eb024930 Zea mays HOM05D003676 ORTHO05D004262 1.6e-15 87.8 362 31.8
Atru.chr1.3647 Acer truncatum HOM05D003676 ORTHO05D004262 3.5e-15 86.7 304 36.2
Nitab4.5_0000188g0110 Nicotiana tabacum HOM05D003676 ORTHO05D004262 5.9e-15 85.9 211 39.3
BcaNung00393 Brassica carinata HOM05D003676 ORTHO05D004262 1.7e-14 84.3 292 34.2
A01p23560 Brassica napus HOM05D003676 ORTHO05D004262 5.0e-14 82.8 123 51.2
BraA01t02262Z Brassica rapa HOM05D003676 ORTHO05D004262 5.0e-14 82.8 123 51.2
vmacro23249 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.5e-13 81.3 190 39.5
vmacro23473 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 1.5e-13 81.3 190 39.5
vmacro22131 Vaccinium macrocarpon HOM05D003676 ORTHO05D004262 5.2e-11 72.8 299 41.1
Pp3c2_17070 Physcomitrium patens HOM05D032375 ORTHO05D030105 9.8e-10 68.6 62 54.8
Gohir.D09G239350 Gossypium hirsutum HOM05D003676 ORTHO05D004262 6.4e-09 65.9 53 69.8
Gorai.006G262100 Gossypium raimondii HOM05D003676 ORTHO05D004262 1.4e-08 64.7 53 67.9
Atru.chr1.3639 Acer truncatum HOM05D003676 ORTHO05D004262 1.0e-06 58.5 55 61.8


User provided reference genes

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