Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G053300 Populus trichocarpa HOM05D004032 ORTHO05D004462 3.2e-116 421.8 217 100.0
Potri.005G145800 Populus trichocarpa HOM05D004032 ORTHO05D004462 1.7e-85 319.7 217 78.3
Haze_15306 Corylus avellana HOM05D004032 ORTHO05D004462 3.7e-72 275.4 218 67.9
QL06p039858 Quercus lobata HOM05D004032 ORTHO05D004462 3.5e-70 268.9 214 67.3
Sabra05G0116500 Salix brachista HOM05D004032 ORTHO05D004462 7.3e-68 261.2 217 68.2
Manes.12G111200 Manihot esculenta HOM05D004032 ORTHO05D004462 5.2e-66 255.0 222 66.7
CiPaw.02G004200 Carya illinoinensis HOM05D004032 ORTHO05D004462 5.4e-63 245.0 223 62.8
GSVIVG01000145001 Vitis vinifera HOM05D004032 ORTHO05D004462 2.3e-61 239.6 217 59.0
Thecc.01G069300 Theobroma cacao HOM05D004032 ORTHO05D004462 5.6e-60 235.0 220 61.8
CiPaw.01G006700 Carya illinoinensis HOM05D004032 ORTHO05D004462 1.8e-58 229.9 223 61.9
Duzib147G1493 Durio zibethinus HOM05D004032 ORTHO05D004462 2.4e-58 229.6 224 59.4
Manes.13G113400 Manihot esculenta HOM05D004032 ORTHO05D004462 5.8e-57 224.9 222 61.7
Duzib187G1312 Durio zibethinus HOM05D004032 ORTHO05D004462 4.2e-55 218.8 221 59.3
VMungo0251G2494 Vigna mungo HOM05D004032 ORTHO05D004462 5.1e-53 211.8 217 58.1
Phvul.003G236700 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 1.1e-52 210.7 217 58.1
Glyma.17G163400 Glycine max HOM05D004032 ORTHO05D004462 1.5e-52 210.3 218 57.8
Glyma.05G103900 Glycine max HOM05D004032 ORTHO05D004462 4.3e-52 208.8 217 55.8
Dinv30069 Davidia involucrata HOM05D004032 ORTHO05D004462 4.8e-51 205.3 217 55.3
Prupe.6G223500 Prunus persica HOM05D004032 ORTHO05D004462 2.6e-49 199.5 236 55.5
Gorai.007G221700 Gossypium raimondii HOM05D004032 ORTHO05D004462 7.6e-49 198.0 227 52.9
Gohir.A11G216800 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-48 197.2 227 52.4
Gohir.D11G206500 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-48 197.2 227 52.0
Ciclev10026503m.g Citrus clementina HOM05D004032 ORTHO05D004462 1.7e-48 196.8 221 53.8
TAR376G0432 Trochodendron aralioides HOM05D004032 ORTHO05D004462 3.8e-48 195.7 218 56.0
Hma1.2p1_0942F.1_g239820 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 4.9e-48 195.3 218 50.5
Glyma.01G192400 Glycine max HOM05D004032 ORTHO05D004462 4.2e-47 192.2 214 50.9
CSS0002661 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 5.4e-47 191.8 224 50.9
Glyma.11G049700 Glycine max HOM05D004032 ORTHO05D004462 5.4e-47 191.8 214 52.3
TPR.G23878 Trifolium pratense HOM05D004032 ORTHO05D004462 5.4e-47 191.8 218 51.8
CSS0031607 Camellia sinensis var. sinensis HOM05D004032 ORTHO05D004462 2.1e-46 189.9 224 50.4
TWI09G0556 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 1.3e-45 187.2 220 55.0
Lalb_Chr05g0213571 Lupinus albus HOM05D004032 ORTHO05D004462 1.5e-44 183.7 217 49.3
Medtr4g095440 Medicago truncatula HOM05D004032 ORTHO05D004462 1.5e-44 183.7 220 51.8
Aqoxy6G02719 Aquilegia oxysepala HOM05D004032 ORTHO05D004462 5.6e-44 181.8 218 50.0
Psat4g083520 Pisum sativum HOM05D004032 ORTHO05D004462 7.4e-44 181.4 220 50.0
COL.COLO4_11544 Corchorus olitorius HOM05D004032 ORTHO05D004462 1.8e-42 176.8 220 51.4
Lj4g0009335 Lotus japonicus HOM05D004032 ORTHO05D004462 3.1e-42 176.0 219 53.0
Cpa.g.sc6.44 Carica papaya HOM05D004032 ORTHO05D004462 1.5e-41 173.7 229 48.9
CSS0026387 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 9.9e-41 171.0 189 52.9
DCAR_025783 Daucus carota HOM05D004032 ORTHO05D004462 1.7e-40 170.2 221 47.5
Dinv26906 Davidia involucrata HOM05D004032 ORTHO05D004462 2.2e-40 169.9 220 51.4
CSS0022714 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D004462 4.9e-40 168.7 186 53.2
RcHm_v2.0_Chr2g0107481 Rosa chinensis HOM05D004032 ORTHO05D004462 6.4e-40 168.3 223 52.5
FAN28G1831 Fragaria x ananassa HOM05D004032 ORTHO05D004462 5.5e-39 165.2 223 51.6
Lalb_Chr09g0334051 Lupinus albus HOM05D004032 ORTHO05D004462 4.6e-38 162.2 207 45.9
Oeu013283.1 Olea europaea HOM05D004032 ORTHO05D004462 7.9e-38 161.4 218 46.8
TWI53G0135 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 7.9e-38 161.4 218 49.5
Lalb_Chr16g0389141 Lupinus albus HOM05D004032 ORTHO05D004462 1.8e-37 160.2 217 46.5
Gohir.A02G153200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.7e-37 158.3 222 50.5
TAR628G1371 Trochodendron aralioides HOM05D004032 ORTHO05D004462 4.3e-36 155.6 210 46.2
Gohir.D03G027200 Gossypium hirsutum HOM05D004032 ORTHO05D004462 5.6e-36 155.2 222 49.5
FvH4_1g17290 Fragaria vesca HOM05D004032 ORTHO05D004462 2.1e-35 153.3 222 49.1
FAN19G2997 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.1e-35 153.3 222 49.1
Gorai.003G028900 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.8e-35 152.9 222 49.5
Nn1g04611 Nelumbo nucifera HOM05D004032 ORTHO05D004462 6.2e-35 151.8 197 48.2
Cc07_g06860 Coffea canephora HOM05D004032 ORTHO05D004462 4.0e-34 149.1 223 47.1
DCAR_010831 Daucus carota HOM05D004032 ORTHO05D004462 5.3e-34 148.7 220 46.4
Lj2g0017817 Lotus japonicus HOM05D004032 ORTHO05D004462 2.6e-33 146.4 212 49.1
Oeu054187.1 Olea europaea HOM05D004032 ORTHO05D004462 2.6e-33 146.4 218 45.9
Glyma.15G185500 Glycine max HOM05D004032 ORTHO05D004462 1.3e-32 144.1 214 44.9
Nitab4.5_0000868g0010 Nicotiana tabacum HOM05D004032 ORTHO05D004462 1.1e-31 141.0 224 46.4
MD02G1182600 Malus domestica HOM05D004032 ORTHO05D004462 2.5e-31 139.8 248 44.8
Eucgr.I00716 Eucalyptus grandis HOM05D004032 ORTHO05D004462 4.2e-31 139.0 222 43.2
vmacro05391 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 4.2e-31 139.0 222 45.9
vmacro17992 Vaccinium macrocarpon HOM05D004032 ORTHO05D004462 7.1e-31 138.3 218 44.5
ClCG01G017390 Citrullus lanatus HOM05D004032 ORTHO05D004462 9.3e-31 137.9 221 42.5
CsaV3_6G043920 Cucumis sativus L. HOM05D004032 ORTHO05D004462 1.6e-30 137.1 221 44.3
MD15G1293900 Malus domestica HOM05D004032 ORTHO05D004462 2.1e-30 136.7 251 43.0
Actinidia16438 Actinidia chinensis HOM05D004032 ORTHO05D004462 2.7e-30 136.3 217 44.2
Oeu031172.1 Olea europaea HOM05D004032 ORTHO05D004462 2.7e-30 136.3 220 42.7
Oeu031171.1 Olea europaea HOM05D004032 ORTHO05D004462 3.5e-30 136.0 220 42.7
Rhsim10G0102400 Rhododendron simsii HOM05D004032 ORTHO05D004462 7.9e-30 134.8 220 44.1
Rhsim08G0095200 Rhododendron simsii HOM05D004032 ORTHO05D004462 3.0e-29 132.9 218 43.1
Peaxi162Scf00264g00213 Petunia axillaris HOM05D004032 ORTHO05D004462 8.7e-29 131.3 235 43.8
Oeu040591.1 Olea europaea HOM05D004032 ORTHO05D004462 3.3e-28 129.4 218 44.0
Oeu040592.1 Olea europaea HOM05D004032 ORTHO05D004462 3.3e-28 129.4 218 44.0
VMungo1215G3265 Vigna mungo HOM05D004032 ORTHO05D004462 7.4e-28 128.3 165 49.7
Actinidia21232 Actinidia chinensis HOM05D004032 ORTHO05D004462 9.6e-28 127.9 143 53.1
Phvul.002G012400 Phaseolus vulgaris HOM05D004032 ORTHO05D004462 9.6e-28 127.9 165 48.5
Gohir.A10G090100 Gossypium hirsutum HOM05D004032 ORTHO05D004462 1.3e-27 127.5 216 40.7
CAN.G1075.18 Capsicum annuum HOM05D004032 ORTHO05D004462 1.6e-27 127.1 231 39.8
Solyc02g092590.3 Solanum lycopersicum HOM05D004032 ORTHO05D004462 2.1e-27 126.7 227 40.1
FAN26G2221 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.8e-27 126.3 221 43.0
Sopen02g037160 Solanum pennellii HOM05D004032 ORTHO05D004462 3.7e-27 125.9 224 39.3
HanXRQChr12g0373191 Helianthus annuus HOM05D004032 ORTHO05D004462 4.8e-27 125.6 223 40.8
TWI73G0275 Tripterygium wilfordii HOM05D004032 ORTHO05D004462 6.3e-27 125.2 216 43.1
Nn5g30527 Nelumbo nucifera HOM05D004032 ORTHO05D004462 3.1e-26 122.9 130 53.8
Gohir.D10G098000 Gossypium hirsutum HOM05D004032 ORTHO05D004462 6.9e-26 121.7 216 39.8
PSO541G5875 Papaver somniferum HOM05D004032 ORTHO05D004462 1.5e-25 120.6 227 40.1
arahy.Tifrunner.gnm1.ann1.7C4JLW Arachis hypogaea HOM05D004032 ORTHO05D004462 2.6e-25 119.8 222 41.4
arahy.Tifrunner.gnm1.ann1.L7L2H1 Arachis hypogaea HOM05D004032 ORTHO05D004462 2.6e-25 119.8 222 41.4
Actinidia36441 Actinidia chinensis HOM05D004032 ORTHO05D004462 3.4e-25 119.4 218 39.9
Lsat_1_v5_gn_4_162340 Lactuca sativa HOM05D004032 ORTHO05D004462 3.4e-25 119.4 224 42.4
Actinidia11994 Actinidia chinensis HOM05D004032 ORTHO05D004462 5.9e-25 118.6 141 51.8
Sed0022630 Sechium edule HOM05D004032 ORTHO05D004462 5.9e-25 118.6 180 45.6
MSTRG.2833 Avicennia marina HOM05D004032 ORTHO05D004462 1.7e-24 117.1 222 44.1
FAN23G1545 Fragaria x ananassa HOM05D004032 ORTHO05D004462 2.2e-24 116.7 221 41.2
Gorai.011G107600 Gossypium raimondii HOM05D004032 ORTHO05D004462 2.9e-24 116.3 216 38.4
PGSC0003DMG400024938 Solanum tuberosum HOM05D004032 ORTHO05D004462 5.0e-24 115.5 226 37.6
PSO675G6353 Papaver somniferum HOM05D004032 ORTHO05D004462 6.5e-24 115.2 224 37.9
PGR004G0357 Punica granatum HOM05D004032 ORTHO05D004462 2.5e-23 113.2 220 40.5
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 2.5e-23 113.2 214 36.0
Atru.chr3.163 Acer truncatum HOM05D004032 ORTHO05D004462 1.2e-22 110.9 228 40.8
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 1.2e-22 110.9 214 35.5
HanXRQChr11g0322451 Helianthus annuus HOM05D004032 ORTHO05D004462 2.1e-22 110.2 219 37.9
MSTRG.23688 Avicennia marina HOM05D004032 ORTHO05D004462 1.0e-21 107.8 224 40.6
Hma1.2p1_0017F.1_g012150 Hydrangea macrophylla HOM05D004032 ORTHO05D004462 3.0e-21 106.3 226 36.7
Lj7A88G34 Lonicera japonica HOM05D004032 ORTHO05D004462 1.1e-20 104.4 188 42.6
Lj4A160G62 Lonicera japonica HOM05D004032 ORTHO05D004462 5.7e-20 102.1 147 46.3
Sc16g0000080 Simmondsia chinensis HOM05D004032 ORTHO05D004462 9.7e-20 101.3 242 34.3
Atru.chr3.192 Acer truncatum HOM05D004032 ORTHO05D004462 1.3e-19 100.9 229 38.4
THA.LOC104819252 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.6e-19 100.5 147 46.3
Hund13934 Selenicereus undatus HOM05D004032 ORTHO05D004462 3.7e-19 99.4 234 35.9
SGA_v2.0_scaffold15G07422 Striga asiatica HOM05D004032 ORTHO05D004462 6.3e-19 98.6 222 36.9
THA.LOC104827558 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 6.3e-19 98.6 124 49.2
THA.LOC104821233 Tarenaya hassleriana HOM05D004032 ORTHO05D004462 1.4e-18 97.4 129 49.6
arahy.Tifrunner.gnm1.ann1.4VG7J5 Arachis hypogaea HOM05D004032 ORTHO05D004462 4.1e-18 95.9 256 34.4
ECA232G3054 Erigeron canadensis HOM05D004032 ORTHO05D004462 2.6e-17 93.2 145 44.8
Aa31LG1G15950 Aethionema arabicum HOM05D004032 ORTHO05D004462 4.5e-17 92.4 133 43.6
AT5G67390 Arabidopsis thaliana HOM05D004032 ORTHO05D004462 1.0e-16 91.3 121 47.1
Thhalv10005011m.g Eutrema salsugineum HOM05D004032 ORTHO05D004462 1.0e-16 91.3 222 32.0
Sp2g29270 Schrenkiella parvula HOM05D004032 ORTHO05D004462 2.9e-16 89.7 119 43.7
Migut.H00365 Erythranthe guttata HOM05D004032 ORTHO05D004462 3.8e-16 89.4 229 36.7
Ah.02g125580 Amaranthus hybridus HOM05D004032 ORTHO05D004462 6.5e-16 88.6 220 36.4
AL8G43930 Arabidopsis lyrata HOM05D004032 ORTHO05D004462 6.5e-16 88.6 137 42.3
CARHR280210 Cardamine hirsuta HOM05D004032 ORTHO05D004462 6.5e-16 88.6 119 45.4
A02p44240 Brassica napus HOM05D004032 ORTHO05D004462 3.2e-15 86.3 161 37.3
BraA02t09348Z Brassica rapa HOM05D004032 ORTHO05D004462 3.2e-15 86.3 161 37.3
BcaB02g09927 Brassica carinata HOM05D004032 ORTHO05D004462 1.2e-14 84.3 141 40.4
BraA09t36588Z Brassica rapa HOM05D004032 ORTHO05D004462 1.2e-14 84.3 157 42.0
BcaC03g18375 Brassica carinata HOM05D004032 ORTHO05D004462 1.6e-14 84.0 155 38.7
C02p64510 Brassica napus HOM05D004032 ORTHO05D004462 1.6e-14 84.0 155 38.7
BolC2t12515H Brassica oleracea HOM05D004032 ORTHO05D004462 1.6e-14 84.0 155 38.7
ECA238G1032 Erigeron canadensis HOM05D004032 ORTHO05D004462 1.6e-14 84.0 151 41.1
BcaB04g20056 Brassica carinata HOM05D004032 ORTHO05D004462 2.1e-14 83.6 175 38.3
CANSAT01G2482 Cannabis sativa HOM05D004032 ORTHO05D004462 2.1e-14 83.6 234 34.6
C09p10940 Brassica napus HOM05D004032 ORTHO05D004462 4.6e-14 82.4 157 41.4
Carub.0008s2709 Capsella rubella HOM05D004032 ORTHO05D004462 6.1e-14 82.0 119 46.2
BcaC04g23221 Brassica carinata HOM05D004032 ORTHO05D004462 7.9e-14 81.6 157 39.5
BolC9t53989H Brassica oleracea HOM05D004032 ORTHO05D004462 7.9e-14 81.6 157 39.5
Hund16386 Selenicereus undatus HOM05D004032 ORTHO05D004462 7.9e-14 81.6 221 34.4
A09p09370 Brassica napus HOM05D004032 ORTHO05D004462 1.0e-13 81.3 157 40.1
C07p24210 Brassica napus HOM05D004032 ORTHO05D004462 1.4e-13 80.9 141 39.0
BolC7t42948H Brassica oleracea HOM05D004032 ORTHO05D004462 1.4e-13 80.9 141 39.0
HanXRQChr14g0441881 Helianthus annuus HOM05D004032 ORTHO05D004462 3.0e-13 79.7 142 39.4
CDE02G2979 Ceratophyllum demersum HOM05D000039 ORTHO05D000870 3.9e-13 79.3 213 33.3
Sed0016234 Sechium edule HOM05D004032 ORTHO05D004462 6.7e-13 78.6 212 30.2
MELO3C007617.2 Cucumis melo HOM05D004032 ORTHO05D004462 8.8e-13 78.2 201 34.8
A07p16510 Brassica napus HOM05D004032 ORTHO05D004462 1.1e-12 77.8 141 38.3
BraA07t29375Z Brassica rapa HOM05D004032 ORTHO05D004462 1.1e-12 77.8 141 38.3
arahy.Tifrunner.gnm1.ann1.NPYP4Z Arachis hypogaea HOM05D004032 ORTHO05D004462 7.4e-12 75.1 151 37.7
BcaC06g34822 Brassica carinata HOM05D004032 ORTHO05D004462 7.4e-12 75.1 141 37.6
Lsat_1_v5_gn_2_83781 Lactuca sativa HOM05D004032 ORTHO05D004462 9.7e-12 74.7 174 36.8
EL10Ac6g15646 Beta vulgaris HOM05D004032 ORTHO05D004462 1.7e-11 73.9 254 32.3
ATR0030G044 Amborella trichopoda HOM05D004032 ORTHO05D004462 3.7e-11 72.8 232 32.3
Sed0024584 Sechium edule HOM05D004032 ORTHO05D004462 6.3e-11 72.0 145 42.1
Nitab4.5_0000651g0050 Nicotiana tabacum HOM05D004032 ORTHO05D004462 9.1e-10 68.2 158 38.6
SalBow6G2131 Salvia bowleyana HOM05D004032 ORTHO05D004462 1.5e-09 67.4 154 36.4
Nitab4.5_0006689g0040 Nicotiana tabacum HOM05D004032 ORTHO05D004462 2.6e-09 66.6 49 67.3
Sed0005334 Sechium edule HOM05D004032 ORTHO05D004462 2.6e-09 66.6 178 35.4
Os03g0442900 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 5.9e-09 65.5 229 29.3
Os03g0604566 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 2.2e-08 63.5 98 40.8
SGA_v2.0_scaffold72G24091 Striga asiatica HOM05D004032 ORTHO05D004462 1.4e-07 60.8 131 34.4
Os03g0762100 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 1.9e-07 60.5 65 52.3
Zm00001eb134870 Zea mays HOM05D004032 ORTHO05D004462 7.2e-07 58.5 157 33.1
Os12g0580600 Oryza sativa ssp. japonica HOM05D004032 ORTHO05D004462 9.4e-07 58.2 160 33.1
MELO3C020862.2 Cucumis melo HOM05D004032 ORTHO05D004462 2.7e-06 56.6 115 33.9
CsaV3_2G016520 Cucumis sativus L. HOM05D004032 ORTHO05D004462 6.1e-06 55.5 115 33.0
HPP92_007856 Vanilla planifolia HOM05D004032 ORTHO05D004462 6.1e-06 55.5 151 31.8
ClCG02G012390 Citrullus lanatus HOM05D004032 ORTHO05D004462 7.9e-06 55.1 213 26.3
Zm00001eb058240 Zea mays HOM05D004032 ORTHO05D004462 7.9e-06 55.1 63 50.8


User provided reference genes

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