Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.7e-196 689.1 343 100.0
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 1.8e-177 625.9 377 84.9
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 1.3e-151 540.0 348 75.9
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 6.0e-149 531.2 345 75.4
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 1.3e-148 530.0 343 76.4
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 3.0e-148 528.9 346 74.6
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 2.5e-147 525.8 346 74.6
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 9.5e-147 523.9 346 74.6
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 6.8e-145 517.7 349 73.6
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 3.8e-143 511.9 376 68.6
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 3.8e-143 511.9 335 73.4
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 4.9e-143 511.5 346 72.0
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 8.4e-143 510.8 343 72.9
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 1.1e-142 510.4 346 71.4
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 1.4e-142 510.0 346 71.1
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.4e-142 509.2 346 70.8
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 5.4e-142 508.1 346 70.8
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.6e-141 506.5 345 71.0
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 3.5e-141 505.4 349 71.6
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 1.0e-140 503.8 348 71.0
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.3e-140 502.7 346 69.9
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 2.5e-139 499.2 343 72.3
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 2.5e-139 499.2 345 72.5
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 4.3e-139 498.4 345 69.3
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 4.3e-139 498.4 348 71.0
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 4.3e-139 498.4 344 70.3
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 9.6e-139 497.3 354 69.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 3.6e-138 495.4 354 69.8
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 3.6e-138 495.4 345 68.7
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 8.1e-138 494.2 342 70.8
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 1.1e-137 493.8 345 71.0
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.4e-137 492.7 350 68.6
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.4e-137 492.7 347 70.6
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.4e-137 492.7 345 70.1
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 3.1e-137 492.3 347 70.0
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 4.0e-137 491.9 345 68.4
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 4.0e-137 491.9 344 67.7
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 6.9e-137 491.1 345 67.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 1.5e-136 490.0 343 69.7
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 4.4e-136 488.4 306 74.2
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 9.9e-136 487.3 346 68.5
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 9.9e-136 487.3 346 67.9
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 2.2e-135 486.1 344 68.6
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 2.9e-135 485.7 330 71.5
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 2.9e-135 485.7 344 68.3
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 2.9e-135 485.7 345 68.1
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 3.8e-135 485.3 345 68.7
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 4.9e-135 485.0 303 77.2
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.1e-134 483.8 374 64.7
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 1.9e-134 483.0 346 67.3
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 4.2e-134 481.9 349 67.9
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 1.2e-133 480.3 345 66.7
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.6e-133 479.9 305 76.4
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 6.0e-133 478.0 349 67.0
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.0e-132 477.2 346 67.3
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 1.3e-132 476.9 349 66.2
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 2.3e-132 476.1 344 67.7
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 2.3e-132 476.1 344 67.7
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 5.1e-132 474.9 349 67.0
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.6e-131 471.5 338 68.9
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 5.6e-131 471.5 343 69.4
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 7.3e-131 471.1 322 68.3
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.3e-130 470.3 343 67.6
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 1.3e-130 470.3 341 67.4
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.6e-130 469.9 338 69.5
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 6.2e-130 468.0 338 70.1
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 1.4e-129 466.8 334 65.9
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 5.3e-129 464.9 346 64.2
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.2e-128 463.8 340 69.4
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 2.6e-128 462.6 345 67.2
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 1.7e-127 459.9 344 67.2
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 2.2e-127 459.5 351 67.2
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 8.4e-127 457.6 344 65.4
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 3.2e-126 455.7 344 65.7
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.7e-125 452.6 306 70.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.0e-125 451.4 346 66.8
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 3.0e-124 449.1 346 64.2
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 5.6e-123 444.9 340 65.9
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.3e-122 443.7 285 75.8
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 6.2e-122 441.4 332 65.1
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 7.6e-120 434.5 340 62.1
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 9.9e-120 434.1 311 65.9
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.7e-119 433.3 321 65.1
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.8e-119 432.2 320 65.0
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 1.4e-118 430.3 298 70.5
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 5.5e-118 428.3 353 60.9
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 7.1e-118 427.9 340 61.5
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 7.1e-118 427.9 286 74.1
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 9.3e-118 427.6 321 64.2
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 1.2e-117 427.2 317 65.0
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 2.1e-117 426.4 321 64.2
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 2.1e-117 426.4 334 62.6
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 2.1e-117 426.4 320 64.7
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 2.7e-117 426.0 309 67.0
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 3.5e-117 425.6 341 62.5
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 1.8e-116 423.3 334 62.6
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 1.8e-116 423.3 334 62.6
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 5.1e-116 421.8 320 64.1
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 5.1e-116 421.8 328 62.8
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 6.7e-116 421.4 279 70.3
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 8.7e-116 421.0 341 61.0
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 8.7e-116 421.0 321 64.5
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.9e-115 419.9 334 61.7
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 7.4e-115 417.9 321 62.6
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 9.6e-115 417.5 310 64.8
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 9.6e-115 417.5 334 60.8
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 1.3e-114 417.2 349 60.7
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 2.1e-114 416.4 334 61.4
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.8e-114 415.2 280 73.2
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 1.8e-113 413.3 283 70.3
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 4.0e-113 412.1 314 63.1
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 5.3e-113 411.8 341 60.1
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 9.0e-113 411.0 286 68.9
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 3.4e-112 409.1 307 63.2
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 1.9e-107 393.3 290 63.8
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.1e-105 387.5 341 60.4
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 1.8e-105 386.7 381 53.8
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 2.0e-104 383.3 282 64.2
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 6.5e-103 378.3 251 73.3
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 4.2e-102 375.6 323 60.1
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 2.7e-101 372.9 305 59.3
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 4.3e-99 365.5 336 56.8
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 4.3e-99 365.5 360 55.6
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 2.8e-98 362.8 304 58.2
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 3.7e-98 362.5 261 67.0
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.1e-97 360.9 350 55.4
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 4.1e-97 359.0 345 53.3
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 2.0e-96 356.7 350 54.9
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 2.2e-95 353.2 344 56.1
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 2.2e-95 353.2 302 56.6
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 1.5e-91 340.5 344 54.4
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 2.4e-89 333.2 302 53.0
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 1.1e-86 324.3 336 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 7.2e-86 321.6 315 51.7
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 1.4e-84 317.4 235 64.3
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.1e-78 297.7 284 53.9
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 1.1e-78 297.7 227 65.6
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 3.7e-74 282.7 231 64.1
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 4.1e-73 279.3 318 51.6
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 2.9e-71 273.1 164 76.8
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 4.4e-67 259.2 212 62.3
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 6.3e-58 228.8 162 66.7
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 6.3e-58 228.8 162 66.7
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 7.0e-57 225.3 140 74.3
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 2.3e-47 193.7 339 34.8
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 3.3e-46 189.9 112 78.6
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.0e-39 168.3 125 63.2
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.3e-39 167.2 112 70.5
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 4.7e-37 159.5 312 35.9
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 2.4e-33 147.1 302 33.1
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.3e-31 141.4 164 48.2
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 1.1e-30 138.3 85 83.5
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 3.4e-27 126.7 126 50.8
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 9.3e-25 118.6 361 29.9
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 2.5e-22 110.5 169 38.5
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 1.4e-17 94.7 105 45.7
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 5.4e-17 92.8 281 26.7


User provided reference genes

Program Settings