Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G043300 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 4313.8 2436 100.0
Sabra07G0038200 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 3744.1 2440 88.3
Potri.005G137700 Populus trichocarpa HOM05D004560 ORTHO05D005540 0.0e+00 3434.8 2445 80.5
Sabra05G0109900 Salix brachista HOM05D004560 ORTHO05D005540 0.0e+00 3271.5 2444 76.8
Manes.12G101400 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2650.5 2471 65.7
Manes.12G101200 Manihot esculenta HOM05D004560 ORTHO05D005540 0.0e+00 2634.0 2503 64.6
QL06p041719 Quercus lobata HOM05D004560 ORTHO05D005540 0.0e+00 2498.0 2529 63.1
Thecc.01G055000 Theobroma cacao HOM05D004560 ORTHO05D005540 0.0e+00 2487.6 2502 62.4
Prupe.7G134200 Prunus persica HOM05D004560 ORTHO05D005540 0.0e+00 2474.1 2535 62.0
Cfa004012 Carpinus fangiana HOM05D004560 ORTHO05D005540 0.0e+00 2455.2 2513 61.8
Duzib187G0053 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2381.7 2504 59.5
Duzib147G0064 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2348.9 2515 59.4
MD02G1171200 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2342.0 2540 59.0
Ciclev10024681m.g Citrus clementina HOM05D004560 ORTHO05D005540 0.0e+00 2319.7 2505 59.2
CiPaw.02G008700 Carya illinoinensis HOM05D004560 ORTHO05D005540 0.0e+00 2314.3 2519 58.8
Duzib264G0542 Durio zibethinus HOM05D004560 ORTHO05D005540 0.0e+00 2309.3 2506 59.4
MD15G1283100 Malus domestica HOM05D004560 ORTHO05D005540 0.0e+00 2301.2 2549 58.5
Gorai.008G075400 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2281.9 2504 57.8
Gohir.A12G072000 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2280.4 2508 57.5
TWI09G1111 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2275.7 2488 58.9
FvH4_5g28170 Fragaria vesca HOM05D004560 ORTHO05D005540 0.0e+00 2272.3 2570 58.8
Gohir.D12G068900 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2268.8 2504 57.6
FAN08G1993 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2265.3 2579 58.7
FAN04G2449 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2258.0 2580 58.6
FAN18G2522 Fragaria x ananassa HOM05D004560 ORTHO05D005540 0.0e+00 2247.2 2569 58.5
RcHm_v2.0_Chr2g0105371 Rosa chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2245.3 2467 59.0
CANSAT01G1534 Cannabis sativa HOM05D004560 ORTHO05D005540 0.0e+00 2230.7 2500 57.9
CSS0026663 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 2222.6 2524 58.0
TWI73G0239 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2222.6 2488 58.4
TWI53G0832 Tripterygium wilfordii HOM05D004560 ORTHO05D005540 0.0e+00 2189.8 2490 57.6
Gohir.A12G070800 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2174.1 2506 56.1
Gorai.008G075200 Gossypium raimondii HOM05D004560 ORTHO05D005540 0.0e+00 2145.5 2507 55.7
Gohir.D12G068700 Gossypium hirsutum HOM05D004560 ORTHO05D005540 0.0e+00 2136.3 2508 55.6
Actinidia03789 Actinidia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 2086.6 2524 55.9
TAR376G0591 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 2081.2 2554 53.8
COL.COLO4_11405 Corchorus olitorius HOM05D004560 ORTHO05D005540 0.0e+00 2075.1 2498 56.1
Lj4g0000036 Lotus japonicus HOM05D004560 ORTHO05D005540 0.0e+00 2023.8 2539 54.3
arahy.Tifrunner.gnm1.ann1.TDMJ0N Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 2014.6 2542 54.9
Phvul.003G244225 Phaseolus vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1993.0 2528 53.2
VMungo0251G0843 Vigna mungo HOM05D004560 ORTHO05D005540 0.0e+00 1992.6 2524 53.2
GSVIVG01022139001 Vitis vinifera HOM05D004560 ORTHO05D005540 0.0e+00 1986.8 2474 54.1
ClCG01G016790 Citrullus lanatus HOM05D004560 ORTHO05D005540 0.0e+00 1986.5 2514 53.3
Nn1g04868 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1979.1 2540 52.6
arahy.Tifrunner.gnm1.ann1.IC24VR Arachis hypogaea HOM05D004560 ORTHO05D005540 0.0e+00 1972.6 2540 54.3
Eucgr.I00932 Eucalyptus grandis HOM05D004560 ORTHO05D005540 0.0e+00 1968.0 2487 53.3
Glyma.17G175000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1958.7 2519 53.5
CSS0033893 Camellia sinensis var. sinensis HOM05D004560 ORTHO05D005540 0.0e+00 1889.4 2199 57.0
Lj7A70T81 Lonicera japonica HOM05D004560 ORTHO05D005540 0.0e+00 1884.0 2547 53.0
MBI02_g02993_MAGBIO Magnolia biondii HOM05D004560 ORTHO05D005540 0.0e+00 1880.5 2542 50.7
CsaV3_6G043220 Cucumis sativus L. HOM05D004560 ORTHO05D005540 0.0e+00 1880.1 2514 51.8
Ca_19501_v3 Cicer arietinum L. HOM05D004560 ORTHO05D005540 0.0e+00 1877.1 2528 52.5
Nn5g30326 Nelumbo nucifera HOM05D004560 ORTHO05D005540 0.0e+00 1860.9 2312 54.8
TPR.G10251 Trifolium pratense HOM05D004560 ORTHO05D005540 0.0e+00 1858.2 2556 51.5
Dinv39857 Davidia involucrata HOM05D004560 ORTHO05D005540 0.0e+00 1851.3 2014 59.3
Glyma.05G096000 Glycine max HOM05D004560 ORTHO05D005540 0.0e+00 1849.3 2509 51.9
Nitab4.5_0002016g0010 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1834.3 2519 50.8
TAR381G0340 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1833.2 2458 51.7
vmacro17949 Vaccinium macrocarpon HOM05D004560 ORTHO05D005540 0.0e+00 1833.2 2507 52.6
Lalb_Chr16g0378501 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1822.4 2495 50.9
Psat4g089080 Pisum sativum HOM05D004560 ORTHO05D005540 0.0e+00 1816.6 2585 49.0
Nitab4.5_0001034g0140 Nicotiana tabacum HOM05D004560 ORTHO05D005540 0.0e+00 1816.2 2513 50.4
Rhsim08G0100900 Rhododendron simsii HOM05D004560 ORTHO05D005540 0.0e+00 1808.1 2526 51.6
Sopen02g035390 Solanum pennellii HOM05D004560 ORTHO05D005540 0.0e+00 1803.9 2506 51.8
CAN.G836.79 Capsicum annuum HOM05D004560 ORTHO05D005540 0.0e+00 1801.2 2514 50.8
Peaxi162Scf00450g00514 Petunia axillaris HOM05D004560 ORTHO05D005540 0.0e+00 1785.4 2643 49.3
Oeu039071.1 Olea europaea HOM05D004560 ORTHO05D005540 0.0e+00 1784.6 2518 50.2
Sed0025145 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1751.1 2519 50.3
Sc03g0001520 Simmondsia chinensis HOM05D004560 ORTHO05D005540 0.0e+00 1750.7 2521 50.5
Lalb_Chr09g0323121 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1736.5 2516 48.8
Sed0014897 Sechium edule HOM05D004560 ORTHO05D005540 0.0e+00 1734.5 2505 50.1
Solyc02g090760.4 Solanum lycopersicum HOM05D004560 ORTHO05D005540 0.0e+00 1726.1 2392 50.9
Haze_15408 Corylus avellana HOM05D004560 ORTHO05D005540 0.0e+00 1713.4 1877 58.9
PGR031G0319 Punica granatum HOM05D004560 ORTHO05D005540 0.0e+00 1708.7 2502 51.4
Aqoxy5G01239 Aquilegia oxysepala HOM05D004560 ORTHO05D005540 0.0e+00 1703.7 2540 48.7
Lalb_Chr09g0323141 Lupinus albus HOM05D004560 ORTHO05D005540 0.0e+00 1703.3 2504 49.3
Hund13557 Selenicereus undatus HOM05D004560 ORTHO05D005540 0.0e+00 1686.8 2517 49.9
AUR62003874 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1611.7 2439 47.2
AUR62001937 Chenopodium quinoa HOM05D004560 ORTHO05D005540 0.0e+00 1602.0 2398 47.7
DCAR_014074 Daucus carota HOM05D004560 ORTHO05D005540 0.0e+00 1588.9 2505 47.4
ECA238G3505 Erigeron canadensis HOM05D004560 ORTHO05D005540 0.0e+00 1568.1 2501 46.6
MSTRG.23750 Avicennia marina HOM05D004560 ORTHO05D005540 0.0e+00 1559.7 2507 47.4
Cc07_g19160 Coffea canephora HOM05D004560 ORTHO05D005540 0.0e+00 1533.9 2516 47.3
THA.LOC104819234 Tarenaya hassleriana HOM05D004560 ORTHO05D005540 0.0e+00 1530.4 2514 47.4
PSO017G5866 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1448.7 2521 43.5
EL10Ac4g07947 Beta vulgaris HOM05D004560 ORTHO05D005540 0.0e+00 1437.2 2484 45.5
PSO384G0851 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1431.8 2621 42.0
PSO135G0768 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1406.7 2622 41.9
PSO170G6095 Papaver somniferum HOM05D004560 ORTHO05D005540 0.0e+00 1397.1 2531 43.1
Lsat_1_v5_gn_2_84180 Lactuca sativa HOM05D004560 ORTHO05D005540 0.0e+00 1363.2 2522 43.2
Sp5g11810 Schrenkiella parvula HOM05D004560 ORTHO05D005540 0.0e+00 1337.8 2490 44.3
AL5G30500 Arabidopsis lyrata HOM05D004560 ORTHO05D005540 0.0e+00 1325.8 2482 43.9
AT3G50370 Arabidopsis thaliana HOM05D004560 ORTHO05D005540 0.0e+00 1318.1 2434 44.4
Aa31LG4G18600 Aethionema arabicum HOM05D004560 ORTHO05D005540 0.0e+00 1314.7 2500 43.8
HanXRQChr14g0448241 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1314.3 2464 43.0
Carub.0005s1668 Capsella rubella HOM05D004560 ORTHO05D005540 0.0e+00 1271.1 2436 43.1
ATR0753G002 Amborella trichopoda HOM05D004560 ORTHO05D005540 0.0e+00 1261.5 2590 41.5
HanXRQChr14g0442851 Helianthus annuus HOM05D004560 ORTHO05D005540 0.0e+00 1242.6 2478 42.0
CARHR159850 Cardamine hirsuta HOM05D004560 ORTHO05D005540 0.0e+00 1184.9 2392 42.0
Migut.N01430 Erythranthe guttata HOM05D004560 ORTHO05D005540 0.0e+00 1184.1 2506 40.7
Thhalv10010051m.g Eutrema salsugineum HOM05D004560 ORTHO05D005540 0.0e+00 1173.3 2441 39.9
TAR628G0564 Trochodendron aralioides HOM05D004560 ORTHO05D005540 0.0e+00 1119.0 1247 56.0
MELO3C007558.2 Cucumis melo HOM05D004560 ORTHO05D005540 1.7e-311 1074.3 1727 47.7
Oeu003960.1 Olea europaea HOM05D004560 ORTHO05D005540 3.4e-307 1059.7 1759 44.2
Atru.chr10.1634 Acer truncatum HOM05D004560 ORTHO05D005540 3.3e-302 1043.1 1030 62.6
Cpa.g.sc55.157 Carica papaya HOM05D004560 ORTHO05D005540 2.6e-299 1033.5 957 64.5
Cpa.g.sc55.158 Carica papaya HOM05D004560 ORTHO05D005540 4.5e-275 953.0 1031 60.2
BcaB01g00621 Brassica carinata HOM05D004560 ORTHO05D005540 1.2e-267 928.3 2425 39.1
Zm00001eb019260 Zea mays HOM05D004560 ORTHO05D005540 6.3e-261 906.0 2520 37.5
A09p43370 Brassica napus HOM05D004560 ORTHO05D005540 6.8e-247 859.4 2419 37.5
BcaC07g39495 Brassica carinata HOM05D004560 ORTHO05D005540 1.3e-245 855.1 2412 36.8
C08p25410 Brassica napus HOM05D004560 ORTHO05D005540 1.3e-245 855.1 2412 36.8
BraA09t39806Z Brassica rapa HOM05D004560 ORTHO05D005540 1.1e-244 852.0 2426 37.3
BolC8t50162H Brassica oleracea HOM05D004560 ORTHO05D005540 1.1e-241 842.0 2452 36.5
SEGI_38337 Sequoiadendron giganteum HOM05D004560 ORTHO05D005540 1.2e-240 838.6 2721 35.1
Actinidia16495 Actinidia chinensis HOM05D004560 ORTHO05D005540 1.1e-225 788.9 713 64.0
Actinidia16497 Actinidia chinensis HOM05D004560 ORTHO05D005540 5.4e-212 743.4 950 56.3
TAR628G1123 Trochodendron aralioides HOM05D004560 ORTHO05D005540 5.3e-207 726.9 980 50.8
HPP92_004113 Vanilla planifolia HOM05D004560 ORTHO05D005540 4.3e-185 654.1 2553 31.2
Haze_15410 Corylus avellana HOM05D004560 ORTHO05D005540 3.7e-176 624.4 568 68.7
CDE08G0981 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.4e-175 622.5 1798 34.0
CDE04G1181 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 2.6e-174 618.2 1930 36.1
SHI34246 Sapria himalayana HOM05D004560 ORTHO05D005540 9.4e-172 609.8 1801 36.4
PGSC0003DMG400004537 Solanum tuberosum HOM05D004560 ORTHO05D005540 1.8e-138 499.2 450 62.9
Dinv39858 Davidia involucrata HOM05D004560 ORTHO05D005540 7.8e-126 457.2 508 54.5
unitig_736.g22379 Utricularia gibba HOM05D004560 ORTHO05D005540 3.0e-125 455.3 1339 35.8
FAN04G2556 Fragaria x ananassa HOM05D004560 ORTHO05D005540 1.1e-124 453.4 679 49.0
Os03g0395600 Oryza sativa ssp. japonica HOM05D004560 ORTHO05D005540 6.8e-122 444.1 710 44.6
unitig_736.g22380 Utricularia gibba HOM05D004560 ORTHO05D005540 2.0e-121 442.6 921 38.1
HPP92_004075 Vanilla planifolia HOM05D004560 ORTHO05D005540 7.3e-108 397.5 1198 33.7
Mapoly0121s0051 Marchantia polymorpha HOM05D004560 ORTHO05D005540 4.8e-99 368.2 2787 28.6
Psat2g096520 Pisum sativum HOM05D004560 ORTHO05D005540 1.3e-80 307.0 301 57.8
Pp3c7_3230 Physcomitrium patens HOM05D004560 ORTHO05D005540 3.7e-75 288.9 2804 28.4
unitig_899.g14936 Utricularia gibba HOM05D004560 ORTHO05D005540 3.7e-67 262.3 972 30.3
SHI34241 Sapria himalayana HOM05D000030 ORTHO05D000009 2.6e-65 256.1 547 37.1
HPP92_004077 Vanilla planifolia HOM05D004560 ORTHO05D005540 1.4e-63 250.4 1043 31.5
unitig_899.g14935 Utricularia gibba HOM05D004560 ORTHO05D005540 3.9e-53 215.7 459 38.1
Pp3c11_18520 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.3e-51 210.7 2640 26.8
RcHm_v2.0_Chr2g0145051 Rosa chinensis HOM05D004560 ORTHO05D005540 1.7e-51 210.3 261 54.0
RcHm_v2.0_Chr4g0416641 Rosa chinensis HOM05D004560 ORTHO05D005540 1.4e-50 207.2 261 53.6
Sed0026550 Sechium edule HOM05D004560 ORTHO05D005540 3.8e-48 199.1 519 35.5
Cpa.g.sc55.156 Carica papaya HOM05D004560 ORTHO05D005540 3.2e-47 196.1 226 52.7
SMO340G0113 Selaginella moellendorffii HOM05D004560 ORTHO05D005540 1.2e-46 194.1 2386 24.8
Pp3c11_18522 Physcomitrium patens HOM05D004560 ORTHO05D005540 1.2e-44 187.6 2613 26.9
CDE08G0295 Ceratophyllum demersum HOM05D006253 ORTHO05D007666 5.7e-44 185.3 560 32.5
unitig_899.g14938 Utricularia gibba HOM05D004560 ORTHO05D005540 5.9e-41 175.3 312 40.1
Rhsim08G0115000 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.2e-33 151.0 313 39.0
Psat3g009840 Pisum sativum HOM05D004560 ORTHO05D005540 2.3e-29 136.7 205 48.3
Psat3g009720 Pisum sativum HOM05D003492 ORTHO05D005540 1.2e-28 134.4 156 55.1
AagrBONN_evm.TU.Sc2ySwM_228.1624 Anthoceros agrestis HOM05D004560 ORTHO05D005540 9.2e-26 124.8 1107 27.0
unitig_899.g14937 Utricularia gibba HOM05D004560 ORTHO05D005540 2.6e-20 106.7 310 31.0
CDE04G1185 Ceratophyllum demersum HOM05D004560 ORTHO05D005540 1.1e-18 101.3 266 35.0
Psat1g018440 Pisum sativum HOM05D004560 ORTHO05D005540 2.0e-17 97.1 66 72.7
Psat5g208000 Pisum sativum HOM05D004560 ORTHO05D005540 2.0e-17 97.1 66 72.7
Psat2g096560 Pisum sativum HOM05D001260 ORTHO05D004134 1.2e-14 87.8 143 44.1
Oeu003961.1 Olea europaea HOM05D004560 ORTHO05D005540 7.5e-12 78.6 124 40.3
Actinidia16496 Actinidia chinensis HOM05D004560 ORTHO05D005540 3.2e-10 73.2 143 42.7
SHI34242 Sapria himalayana HOM05D004560 ORTHO05D005540 1.6e-09 70.9 67 64.2
CBR_g34112 Chara braunii HOM05D000019 ORTHO05D137378 1.3e-08 67.8 58 56.9
EL10Ac9g22827 Beta vulgaris HOM05D004560 ORTHO05D005540 3.9e-08 66.2 135 40.0
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.5e-07 64.3 99 44.4
RcHm_v2.0_Chr2g0105361 Rosa chinensis HOM05D004560 ORTHO05D037471 2.5e-07 63.5 75 53.3
Psat2g096600 Pisum sativum HOM05D004560 ORTHO05D005540 4.3e-07 62.8 102 42.2


User provided reference genes

Program Settings