Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G040900 Populus trichocarpa HOM05D005038 ORTHO05D006055 5.2e-140 501.1 269 100.0
Sabra07G0036600 Salix brachista HOM05D005038 ORTHO05D006055 5.4e-121 438.0 281 86.1
Potri.005G136200 Populus trichocarpa HOM05D005038 ORTHO05D006055 4.6e-120 434.9 267 86.1
Sabra05G0108900 Salix brachista HOM05D005038 ORTHO05D006055 1.7e-119 433.0 267 85.0
Duzib264G0221 Durio zibethinus HOM05D005038 ORTHO05D006055 6.4e-114 414.5 260 83.1
Manes.13G126100 Manihot esculenta HOM05D005038 ORTHO05D006055 4.1e-113 411.8 269 81.0
Duzib147G1247 Durio zibethinus HOM05D005038 ORTHO05D006055 1.2e-112 410.2 261 83.9
Gohir.A11G190200 Gossypium hirsutum HOM05D005038 ORTHO05D006055 3.0e-111 405.6 262 82.8
Thecc.01G052200 Theobroma cacao HOM05D005038 ORTHO05D006055 3.0e-111 405.6 260 82.7
Atru.chr3.399 Acer truncatum HOM05D005038 ORTHO05D006055 1.5e-110 403.3 270 80.4
Gohir.D11G196900 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.5e-110 402.5 262 82.1
Gorai.007G210800 Gossypium raimondii HOM05D005038 ORTHO05D006055 5.6e-110 401.4 262 82.1
COL.COLO4_11379 Corchorus olitorius HOM05D005038 ORTHO05D006055 2.8e-109 399.1 260 84.6
PGR102G3322 Punica granatum HOM05D005038 ORTHO05D006055 2.8e-109 399.1 262 80.2
Cpa.g.sc6.381 Carica papaya HOM05D005038 ORTHO05D006055 8.1e-109 397.5 262 80.5
Haze_15429 Corylus avellana HOM05D005038 ORTHO05D006055 1.1e-108 397.1 262 79.8
CiPaw.01G021700 Carya illinoinensis HOM05D005038 ORTHO05D006055 4.0e-108 395.2 269 78.1
Ciclev10026264m.g Citrus clementina HOM05D005038 ORTHO05D006055 4.0e-108 395.2 271 81.2
TWI09G0447 Tripterygium wilfordii HOM05D005038 ORTHO05D006055 3.8e-106 388.7 267 77.9
CSS0005034 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 6.4e-106 387.9 270 80.4
QL06p042351 Quercus lobata HOM05D005038 ORTHO05D006055 1.4e-105 386.7 263 78.7
MD02G1168700 Malus domestica HOM05D005038 ORTHO05D006055 1.9e-105 386.3 271 75.3
ClCG01G016690 Citrullus lanatus HOM05D005038 ORTHO05D006055 2.1e-104 382.9 269 77.0
Hma1.2p1_0047F.1_g027670 Hydrangea macrophylla HOM05D005038 ORTHO05D006055 2.1e-104 382.9 263 76.8
Nitab4.5_0000310g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.1e-104 382.9 261 75.9
CANSAT01G0585 Cannabis sativa HOM05D005038 ORTHO05D006055 3.5e-104 382.1 267 74.2
TAR628G1256 Trochodendron aralioides HOM05D005038 ORTHO05D006055 3.5e-104 382.1 261 77.8
CiPaw.02G009600 Carya illinoinensis HOM05D005038 ORTHO05D006055 4.6e-104 381.7 267 76.8
MELO3C007547.2 Cucumis melo HOM05D005038 ORTHO05D006055 4.6e-104 381.7 269 78.4
CsaV3_6G043110 Cucumis sativus L. HOM05D005038 ORTHO05D006055 6.0e-104 381.3 269 78.4
CAN.G165.30 Capsicum annuum HOM05D005038 ORTHO05D006055 7.8e-104 380.9 264 75.8
Gorai.011G105100 Gossypium raimondii HOM05D005038 ORTHO05D006055 1.3e-103 380.2 260 77.3
RcHm_v2.0_Chr2g0104991 Rosa chinensis HOM05D005038 ORTHO05D006055 1.3e-103 380.2 269 75.5
Gohir.A10G092400 Gossypium hirsutum HOM05D005038 ORTHO05D006055 5.1e-103 378.3 260 76.9
Sopen02g015220 Solanum pennellii HOM05D005038 ORTHO05D006055 5.1e-103 378.3 262 76.0
VMungo0251G1314 Vigna mungo HOM05D005038 ORTHO05D006055 1.1e-102 377.1 258 77.5
FAN19G2696 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.5e-102 376.7 270 74.1
Lalb_Chr05g0226661 Lupinus albus HOM05D005038 ORTHO05D006055 1.5e-102 376.7 262 76.7
Nn5g30191 Nelumbo nucifera HOM05D005038 ORTHO05D006055 2.5e-102 375.9 262 75.2
Eucgr.H01997 Eucalyptus grandis HOM05D005038 ORTHO05D006055 3.3e-102 375.6 287 73.5
FvH4_1g15680 Fragaria vesca HOM05D005038 ORTHO05D006055 3.3e-102 375.6 270 74.1
Glyma.05G090600 Glycine max HOM05D005038 ORTHO05D006055 3.3e-102 375.6 263 77.6
Glyma.17G176200 Glycine max HOM05D005038 ORTHO05D006055 3.3e-102 375.6 259 76.8
PGSC0003DMG400000767 Solanum tuberosum HOM05D005038 ORTHO05D006055 3.3e-102 375.6 261 75.9
Solyc02g065060.3 Solanum lycopersicum HOM05D005038 ORTHO05D006055 4.3e-102 375.2 262 75.2
CSS0034792 Camellia sinensis var. sinensis HOM05D005038 ORTHO05D006055 7.3e-102 374.4 263 75.7
Prupe.7G136500 Prunus persica HOM05D005038 ORTHO05D006055 9.6e-102 374.0 269 74.7
Gohir.D10G095800 Gossypium hirsutum HOM05D005038 ORTHO05D006055 2.8e-101 372.5 260 75.4
Sopen02g035200 Solanum pennellii HOM05D005038 ORTHO05D006055 8.1e-101 370.9 259 74.9
Solyc02g090540.4 Solanum lycopersicum HOM05D005038 ORTHO05D006055 1.1e-100 370.5 259 74.9
Sed0007672 Sechium edule HOM05D005038 ORTHO05D006055 1.4e-100 370.2 265 78.1
MSTRG.23767 Avicennia marina HOM05D005038 ORTHO05D006055 1.8e-100 369.8 261 79.7
Migut.H00455 Erythranthe guttata HOM05D005038 ORTHO05D006055 2.4e-100 369.4 264 80.3
Aqoxy5G01298 Aquilegia oxysepala HOM05D005038 ORTHO05D006055 4.0e-100 368.6 261 73.6
arahy.Tifrunner.gnm1.ann1.S4TQX4 Arachis hypogaea HOM05D005038 ORTHO05D006055 4.0e-100 368.6 269 73.2
Nitab4.5_0000728g0080 Nicotiana tabacum HOM05D005038 ORTHO05D006055 4.0e-100 368.6 265 75.5
PGSC0003DMG400010021 Solanum tuberosum HOM05D005038 ORTHO05D006055 4.0e-100 368.6 261 73.6
arahy.Tifrunner.gnm1.ann1.MSK3BR Arachis hypogaea HOM05D005038 ORTHO05D006055 9.0e-100 367.5 277 71.5
Peaxi162Scf00049g00149 Petunia axillaris HOM05D005038 ORTHO05D006055 1.5e-99 366.7 266 73.7
FAN23G2750 Fragaria x ananassa HOM05D005038 ORTHO05D006055 2.0e-99 366.3 284 70.8
Cc07_g05830 Coffea canephora HOM05D005038 ORTHO05D006055 2.6e-99 365.9 268 75.4
Lj4g0011946 Lotus japonicus HOM05D005038 ORTHO05D006055 7.6e-99 364.4 266 72.9
FAN26G2456 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.3e-98 363.6 279 70.6
FAN28G2421 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.3e-98 363.6 284 70.4
FAN28G1979 Fragaria x ananassa HOM05D005038 ORTHO05D006055 1.7e-98 363.2 285 69.8
Lsat_1_v5_gn_2_84360 Lactuca sativa HOM05D005038 ORTHO05D006055 1.7e-98 363.2 263 73.0
Oeu021840.1 Olea europaea HOM05D005038 ORTHO05D006055 1.7e-98 363.2 269 72.9
Rhsim08G0102300 Rhododendron simsii HOM05D005038 ORTHO05D006055 1.7e-98 363.2 264 78.8
CAN.G836.64 Capsicum annuum HOM05D005038 ORTHO05D006055 2.2e-98 362.8 258 72.9
Hund16340 Selenicereus undatus HOM05D005038 ORTHO05D006055 2.2e-98 362.8 258 73.3
THA.LOC104821271 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 2.9e-98 362.5 266 71.1
A01p24040 Brassica napus HOM05D005038 ORTHO05D006055 4.2e-97 358.6 271 69.7
BraA01t02316Z Brassica rapa HOM05D005038 ORTHO05D006055 4.2e-97 358.6 271 69.7
ECA238G0061 Erigeron canadensis HOM05D005038 ORTHO05D006055 4.2e-97 358.6 264 73.1
THA.LOC104827003 Tarenaya hassleriana HOM05D005038 ORTHO05D006055 5.4e-97 358.2 270 71.5
AL5G30700 Arabidopsis lyrata HOM05D005038 ORTHO05D006055 7.1e-97 357.8 266 69.9
Medtr8g079810 Medicago truncatula HOM05D005038 ORTHO05D006055 1.6e-96 356.7 259 78.0
AT3G50560 Arabidopsis thaliana HOM05D005038 ORTHO05D006055 2.1e-96 356.3 268 70.1
BcaB05g23223 Brassica carinata HOM05D005038 ORTHO05D006055 2.1e-96 356.3 271 68.6
BcaB01g00609 Brassica carinata HOM05D005038 ORTHO05D006055 2.7e-96 355.9 266 69.5
Sp5g11650 Schrenkiella parvula HOM05D005038 ORTHO05D006055 2.7e-96 355.9 271 69.7
TAR376G0303 Trochodendron aralioides HOM05D005038 ORTHO05D006055 2.7e-96 355.9 262 77.9
BcaC09g50037 Brassica carinata HOM05D005038 ORTHO05D006055 3.5e-96 355.5 271 69.4
C01p29730 Brassica napus HOM05D005038 ORTHO05D006055 3.5e-96 355.5 271 69.4
BolC1t02913H Brassica oleracea HOM05D005038 ORTHO05D006055 3.5e-96 355.5 271 69.4
Psat4g087880 Pisum sativum HOM05D005038 ORTHO05D006055 4.6e-96 355.1 261 73.2
Thhalv10010624m.g Eutrema salsugineum HOM05D005038 ORTHO05D006055 6.0e-96 354.8 266 69.2
PSO170G1702 Papaver somniferum HOM05D005038 ORTHO05D006055 6.0e-96 354.8 290 67.2
HanXRQChr03g0061121 Helianthus annuus HOM05D005038 ORTHO05D006055 1.3e-95 353.6 263 70.7
BolC8t50181H Brassica oleracea HOM05D005038 ORTHO05D006055 1.8e-95 353.2 266 68.4
BcaC07g39516 Brassica carinata HOM05D005038 ORTHO05D006055 2.3e-95 352.8 266 68.0
A09p43580 Brassica napus HOM05D005038 ORTHO05D006055 3.9e-95 352.1 266 68.0
C08p25620 Brassica napus HOM05D005038 ORTHO05D006055 8.7e-95 350.9 266 68.0
Carub.0005s1688 Capsella rubella HOM05D005038 ORTHO05D006055 8.7e-95 350.9 272 68.4
Glyma.11G057800 Glycine max HOM05D005038 ORTHO05D006055 2.5e-94 349.4 265 70.2
Nn1g05863 Nelumbo nucifera HOM05D005038 ORTHO05D006055 7.4e-94 347.8 262 70.6
HanXRQChr14g0448271 Helianthus annuus HOM05D005038 ORTHO05D006055 2.8e-93 345.9 268 69.8
Hund13568 Selenicereus undatus HOM05D005038 ORTHO05D006055 2.8e-93 345.9 257 71.6
Lalb_Chr16g0378421 Lupinus albus HOM05D005038 ORTHO05D006055 6.2e-93 344.7 267 68.9
Phvul.002G020600 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 2.4e-92 342.8 262 67.6
Aa31LG4G18730 Aethionema arabicum HOM05D005038 ORTHO05D006055 6.9e-92 341.3 269 68.8
VMungo1215G2888 Vigna mungo HOM05D005038 ORTHO05D006055 1.2e-91 340.5 269 65.4
Lj2g0014661 Lotus japonicus HOM05D005038 ORTHO05D006055 2.0e-91 339.7 265 68.7
Actinidia16508 Actinidia chinensis HOM05D005038 ORTHO05D006055 7.6e-91 337.8 292 66.8
PSO017G3935 Papaver somniferum HOM05D005038 ORTHO05D006055 9.9e-91 337.4 292 64.0
Lj7C62T0 Lonicera japonica HOM05D005038 ORTHO05D006055 1.7e-90 336.7 267 68.2
Peaxi162Scf00916g00134 Petunia axillaris HOM05D005038 ORTHO05D006055 1.7e-90 336.7 262 74.0
PSO675G4848 Papaver somniferum HOM05D005038 ORTHO05D006055 5.5e-89 331.6 282 65.2
SEGI_27725 Sequoiadendron giganteum HOM05D005038 ORTHO05D006055 7.1e-89 331.3 249 67.9
TPR.G19012 Trifolium pratense HOM05D005038 ORTHO05D006055 7.1e-89 331.3 236 73.7
GSVIVG01006576001 Vitis vinifera HOM05D005038 ORTHO05D006055 9.3e-89 330.9 209 84.2
ATR0097G001 Amborella trichopoda HOM05D005038 ORTHO05D006055 1.2e-88 330.5 256 66.8
AUR62003853 Chenopodium quinoa HOM05D005038 ORTHO05D006055 2.7e-88 329.3 262 67.6
PSO675G5181 Papaver somniferum HOM05D005038 ORTHO05D006055 2.7e-88 329.3 289 63.0
PSO732G0767 Papaver somniferum HOM05D005038 ORTHO05D006055 2.7e-88 329.3 276 65.6
Lj4A139T89 Lonicera japonica HOM05D005038 ORTHO05D006055 1.0e-87 327.4 275 66.9
Nitab4.5_0000440g0200 Nicotiana tabacum HOM05D005038 ORTHO05D006055 1.3e-87 327.0 199 85.4
PSO541G2053 Papaver somniferum HOM05D005038 ORTHO05D006055 8.7e-87 324.3 282 63.1
PSO675G1229 Papaver somniferum HOM05D005038 ORTHO05D006055 1.5e-86 323.6 281 64.1
Dinv39876 Davidia involucrata HOM05D005038 ORTHO05D006055 1.1e-84 317.4 203 84.2
vmacro17934 Vaccinium macrocarpon HOM05D005038 ORTHO05D006055 3.1e-84 315.8 221 78.7
CDE03G0279 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 2.6e-83 312.8 261 64.8
CARHR160070 Cardamine hirsuta HOM05D005038 ORTHO05D006055 2.9e-82 309.3 205 79.0
BraA09t39820Z Brassica rapa HOM05D005038 ORTHO05D006055 2.1e-80 303.1 200 76.5
EL10Ac6g15150 Beta vulgaris HOM05D005038 ORTHO05D006055 4.6e-80 302.0 261 62.5
Os08g0476300 Oryza sativa ssp. japonica HOM05D005038 ORTHO05D006055 1.3e-79 300.4 265 58.9
Lj7C59T8 Lonicera japonica HOM05D005038 ORTHO05D006055 2.1e-72 276.6 283 56.9
Nitab4.5_0013126g0010 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.8e-69 266.2 165 86.7
Phvul.003G245900 Phaseolus vulgaris HOM05D005038 ORTHO05D006055 2.6e-67 259.6 175 80.6
Mapoly0021s0094 Marchantia polymorpha HOM05D005038 ORTHO05D006055 3.4e-67 259.2 260 53.5
SMO364G0608 Selaginella moellendorffii HOM05D005038 ORTHO05D006055 2.2e-66 256.5 248 54.8
Pp3c25_14660 Physcomitrium patens HOM05D005038 ORTHO05D006055 2.9e-66 256.1 252 53.2
Zm00001eb038220 Zea mays HOM05D005038 ORTHO05D006055 3.9e-63 245.7 218 60.6
Dinv29965 Davidia involucrata HOM05D005038 ORTHO05D006055 2.7e-56 223.0 186 68.3
Lalb_Chr16g0378241 Lupinus albus HOM05D005038 ORTHO05D006055 7.9e-56 221.5 172 70.9
SGA_v2.0_scaffold15G07261 Striga asiatica HOM05D005038 ORTHO05D006055 6.3e-53 211.8 277 50.5
AUR62001954 Chenopodium quinoa HOM05D005038 ORTHO05D006055 3.0e-39 166.4 125 67.2
MSTRG.2897 Avicennia marina HOM05D005038 ORTHO05D006055 7.0e-36 155.2 123 74.8
arahy.Tifrunner.gnm1.ann1.647UNH Arachis hypogaea HOM05D005038 ORTHO05D006055 1.5e-30 137.5 85 88.2
Pp3c4_31290 Physcomitrium patens HOM05D005038 ORTHO05D006055 7.5e-30 135.2 251 33.9
Mapoly0010s0198 Marchantia polymorpha HOM05D005038 ORTHO05D006055 1.7e-29 134.0 254 33.1
CDE06G1667 Ceratophyllum demersum HOM05D005038 ORTHO05D006055 3.0e-23 113.2 102 56.9
PRCOL_00004339 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 1.3e-13 81.3 183 29.5
PRCOL_00004651 Prasinoderma coloniale HOM05D005038 ORTHO05D006055 3.2e-12 76.6 249 26.1
Solyc06g054330.3 Solanum lycopersicum HOM05D003236 ORTHO05D003620 7.3e-09 65.5 194 29.9
Sopen06g019440 Solanum pennellii HOM05D003236 ORTHO05D003620 9.5e-09 65.1 194 29.9
Nitab4.5_0013126g0020 Nicotiana tabacum HOM05D005038 ORTHO05D006055 2.1e-08 63.9 34 73.5
CANSAT01G0620 Cannabis sativa HOM05D002673 ORTHO05D002766 3.6e-08 63.2 177 27.1
Sopen01g016440 Solanum pennellii HOM05D003236 ORTHO05D003620 3.6e-08 63.2 194 29.4
TWI53G0183 Tripterygium wilfordii HOM05D003236 ORTHO05D003620 8.1e-08 62.0 197 29.9
RcHm_v2.0_Chr2g0115641 Rosa chinensis HOM05D002673 ORTHO05D002766 1.4e-07 61.2 172 27.9
Zm00001eb080970 Zea mays HOM05D002673 ORTHO05D002766 1.8e-07 60.8 175 29.7
Eucgr.H02334 Eucalyptus grandis HOM05D002673 ORTHO05D002766 3.1e-07 60.1 177 26.0
Aqoxy2G03298 Aquilegia oxysepala HOM05D003236 ORTHO05D003620 4.0e-07 59.7 195 27.2
Nitab4.5_0006333g0030 Nicotiana tabacum HOM05D003236 ORTHO05D003620 5.2e-07 59.3 194 28.4
Nitab4.5_0008223g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 6.8e-07 58.9 194 28.4
CAN.G851.10 Capsicum annuum HOM05D003236 ORTHO05D003620 8.9e-07 58.5 194 28.9
ECA248G2845 Erigeron canadensis HOM05D003236 ORTHO05D003620 8.9e-07 58.5 171 29.8
Medtr3g087860 Medicago truncatula HOM05D002673 ORTHO05D002766 8.9e-07 58.5 186 28.0
Medtr4g097510 Medicago truncatula HOM05D002673 ORTHO05D002766 8.9e-07 58.5 172 25.6
Thecc.01G076600 Theobroma cacao HOM05D002673 ORTHO05D002766 8.9e-07 58.5 177 25.4
Manes.08G035000 Manihot esculenta HOM05D000182 ORTHO05D000112 1.2e-06 58.2 194 27.8
Ah.03g142670 Amaranthus hybridus HOM05D002673 ORTHO05D002766 1.5e-06 57.8 172 27.3
Lsat_1_v5_gn_1_50180 Lactuca sativa HOM05D003236 ORTHO05D003620 1.5e-06 57.8 182 27.5
Lalb_Chr23g0277261 Lupinus albus HOM05D002673 ORTHO05D002766 1.5e-06 57.8 172 28.5
Nitab4.5_0000321g0010 Nicotiana tabacum HOM05D003236 ORTHO05D003620 2.0e-06 57.4 194 27.8
Psat5g088520 Pisum sativum HOM05D002673 ORTHO05D002766 2.6e-06 57.0 195 24.6
Aqoxy2G01031 Aquilegia oxysepala HOM05D000182 ORTHO05D000112 3.4e-06 56.6 193 28.0
Cfa022528 Carpinus fangiana HOM05D002673 ORTHO05D006055 3.4e-06 56.6 172 26.7
TWI53G1425 Tripterygium wilfordii HOM05D002673 ORTHO05D002766 3.4e-06 56.6 176 23.9
Migut.N00158 Erythranthe guttata HOM05D003236 ORTHO05D003620 4.4e-06 56.2 201 26.9
HanXRQChr10g0286501 Helianthus annuus HOM05D003236 ORTHO05D003620 4.4e-06 56.2 178 27.5
Nn6g34785 Nelumbo nucifera HOM05D000182 ORTHO05D000112 4.4e-06 56.2 194 27.8
Sc14g0008900 Simmondsia chinensis HOM05D001489 ORTHO05D001380 4.4e-06 56.2 186 25.8
TAR362G0648 Trochodendron aralioides HOM05D003236 ORTHO05D003620 4.4e-06 56.2 194 27.3
Zm00001eb251870 Zea mays HOM05D003236 ORTHO05D003620 4.4e-06 56.2 196 28.6
HanXRQChr01g0028881 Helianthus annuus HOM05D003236 ORTHO05D003620 5.8e-06 55.8 183 29.5
HanXRQChr11g0351171 Helianthus annuus HOM05D003236 ORTHO05D003620 5.8e-06 55.8 178 26.4
MBI17_g28774_MAGBIO Magnolia biondii HOM05D000182 ORTHO05D000112 5.8e-06 55.8 181 27.6
TPR.G3710 Trifolium pratense HOM05D002673 ORTHO05D002766 5.8e-06 55.8 180 22.8
Glyma.05G108500 Glycine max HOM05D002673 ORTHO05D002766 7.5e-06 55.5 177 24.9
Nn2g14246 Nelumbo nucifera HOM05D000182 ORTHO05D000112 7.5e-06 55.5 192 27.6
Ca_22094_v3 Cicer arietinum L. HOM05D002673 ORTHO05D002766 9.9e-06 55.1 177 23.7
ECA246G4770 Erigeron canadensis HOM05D002673 ORTHO05D002766 9.9e-06 55.1 172 25.0
MBI13_g04192_MAGBIO Magnolia biondii HOM05D002673 ORTHO05D002766 9.9e-06 55.1 156 27.6
TAR633G2542 Trochodendron aralioides HOM05D003236 ORTHO05D003620 9.9e-06 55.1 194 26.8


User provided reference genes

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