Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G034700 Populus trichocarpa HOM05D008334 ORTHO05D010366 6.6e-51 203.8 104 100.0
Sabra05G0106400 Salix brachista HOM05D008334 ORTHO05D010366 3.1e-32 141.7 102 71.6
Potri.005G131000 Populus trichocarpa HOM05D008334 ORTHO05D010366 2.9e-30 135.2 102 69.6
Cfa004229 Carpinus fangiana HOM05D008334 ORTHO05D010366 7.4e-18 94.0 103 46.6
Manes.12G094900 Manihot esculenta HOM05D008334 ORTHO05D010366 2.0e-15 85.9 105 48.6
Haze_15171 Corylus avellana HOM05D008334 ORTHO05D010366 2.6e-15 85.5 104 43.3
QL06p044185 Quercus lobata HOM05D008334 ORTHO05D010366 3.2e-13 78.6 106 44.3
CiPaw.01G028200 Carya illinoinensis HOM05D008334 ORTHO05D010366 9.4e-13 77.0 106 44.3
Manes.13G131800 Manihot esculenta HOM05D008334 ORTHO05D010366 1.2e-12 76.6 110 41.8
Ciclev10026829m.g Citrus clementina HOM05D008334 ORTHO05D010366 3.9e-11 71.6 113 43.4
Migut.H00500 Erythranthe guttata HOM05D008334 ORTHO05D010366 6.7e-11 70.9 106 42.5
RcHm_v2.0_Chr2g0103311 Rosa chinensis HOM05D008334 ORTHO05D010366 1.1e-10 70.1 110 40.9
FAN19G2894 Fragaria x ananassa HOM05D008334 ORTHO05D010366 4.3e-10 68.2 111 40.5
TPR.G29861 Trifolium pratense HOM05D008334 ORTHO05D010366 4.3e-10 68.2 108 38.9
Nitab4.5_0001014g0160 Nicotiana tabacum HOM05D008334 ORTHO05D010366 5.7e-10 67.8 104 42.3
FvH4_1g14560 Fragaria vesca HOM05D008334 ORTHO05D010366 1.7e-09 66.2 111 39.6
TAR381G1599 Trochodendron aralioides HOM05D008210 ORTHO05D010078 6.3e-09 64.3 104 40.4
SGA_v2.0_scaffold15G07210 Striga asiatica HOM05D008334 ORTHO05D010366 8.2e-09 63.9 103 44.7
Medtr5g018540 Medicago truncatula HOM05D008334 ORTHO05D010366 1.1e-08 63.5 107 36.4
FAN23G2256 Fragaria x ananassa HOM05D008334 ORTHO05D010366 1.4e-08 63.2 110 39.1
FAN28G2207 Fragaria x ananassa HOM05D008334 ORTHO05D010366 1.8e-08 62.8 110 39.1
Prupe.7G144800 Prunus persica HOM05D008334 ORTHO05D010366 2.4e-08 62.4 108 39.8
Glyma.16G144100 Glycine max HOM05D008334 ORTHO05D010366 3.1e-08 62.0 111 37.8
Prupe.7G144900 Prunus persica HOM05D008334 ORTHO05D010366 3.1e-08 62.0 108 38.9
Glyma.11G060500 Glycine max HOM05D008334 ORTHO05D010366 4.1e-08 61.6 108 40.7
Lalb_Chr05g0226961 Lupinus albus HOM05D008334 ORTHO05D010366 4.1e-08 61.6 107 40.2
Thecc.01G046100 Theobroma cacao HOM05D008334 ORTHO05D010366 5.3e-08 61.2 108 43.5
Medtr8g078960 Medicago truncatula HOM05D008334 ORTHO05D010366 9.1e-08 60.5 110 37.3
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 1.5e-07 59.7 87 41.4
Duzib147G0108 Durio zibethinus HOM05D008334 ORTHO05D010366 1.5e-07 59.7 107 38.3
Nitab4.5_0000108g0210 Nicotiana tabacum HOM05D008334 ORTHO05D010366 1.5e-07 59.7 86 43.0
Gohir.A11G045200 Gossypium hirsutum HOM05D008334 ORTHO05D010366 2.6e-07 58.9 107 36.4
Gohir.D11G048700 Gossypium hirsutum HOM05D008334 ORTHO05D010366 2.6e-07 58.9 107 36.4
Gorai.007G052300 Gossypium raimondii HOM05D008334 ORTHO05D010366 2.6e-07 58.9 107 36.4
Nn5g29422 Nelumbo nucifera HOM05D008210 ORTHO05D010078 2.6e-07 58.9 101 37.6
Peaxi162Scf00535g00717 Petunia axillaris HOM05D008334 ORTHO05D010366 2.6e-07 58.9 104 41.3
Atru.chr3.467 Acer truncatum HOM05D008334 ORTHO05D010366 4.5e-07 58.2 112 38.4
COL.COLO4_22186 Corchorus olitorius HOM05D008334 ORTHO05D010366 5.9e-07 57.8 111 38.7
Atru.chr3.465 Acer truncatum HOM05D008334 ORTHO05D010366 7.7e-07 57.4 112 37.5
Aqoxy2G03320 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 7.7e-07 57.4 104 37.5
Aqoxy6G00952 Aquilegia oxysepala HOM05D008210 ORTHO05D010078 7.7e-07 57.4 104 37.5
TAR628G0004 Trochodendron aralioides HOM05D008210 ORTHO05D010078 7.7e-07 57.4 94 41.5
CAN.G836.22 Capsicum annuum HOM05D008334 ORTHO05D012551 1.0e-06 57.0 102 38.2
MBI16_g31333_MAGBIO Magnolia biondii HOM05D008210 ORTHO05D010078 1.3e-06 56.6 111 37.8
Thecc.08G019400 Theobroma cacao HOM05D008210 ORTHO05D010078 2.9e-06 55.5 70 42.9
Manes.05G166500 Manihot esculenta HOM05D008210 ORTHO05D010078 5.0e-06 54.7 109 36.7
TPR.G12346 Trifolium pratense HOM05D008210 ORTHO05D010078 5.0e-06 54.7 102 32.4
MELO3C007512.2 Cucumis melo HOM05D037312 ORTHO05D010366 6.5e-06 54.3 102 38.2
PGSC0003DMG400010112 Solanum tuberosum HOM05D008334 ORTHO05D010366 6.5e-06 54.3 104 38.5
Ah.09g236870 Amaranthus hybridus HOM05D008210 ORTHO05D010078 8.5e-06 53.9 85 37.6
Ah.09g236890 Amaranthus hybridus HOM05D008210 ORTHO05D010078 8.5e-06 53.9 85 37.6
CsaV3_6G042740 Cucumis sativus L. HOM05D037312 ORTHO05D010366 8.5e-06 53.9 106 37.7


User provided reference genes

Program Settings