Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 0.0e+00 2109.3 1052 100.0
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 0.0e+00 1794.2 1101 83.6
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 0.0e+00 1650.6 1053 76.4
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 0.0e+00 1554.7 1047 72.0
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 0.0e+00 1549.6 1057 71.3
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 0.0e+00 1548.1 1051 71.3
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 0.0e+00 1513.8 1067 69.5
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 0.0e+00 1505.0 1048 69.8
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 0.0e+00 1491.5 1030 70.1
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 0.0e+00 1488.0 1084 68.6
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 0.0e+00 1476.8 1056 68.5
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1475.7 1059 68.1
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 0.0e+00 1474.9 1058 68.2
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 0.0e+00 1469.9 1041 67.5
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 0.0e+00 1462.2 1052 66.8
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 0.0e+00 1451.0 1054 67.8
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1446.8 1042 66.8
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 0.0e+00 1440.6 1053 67.3
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 0.0e+00 1433.3 1053 66.0
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1429.8 1055 67.5
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 0.0e+00 1427.2 1054 65.7
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1424.5 1055 65.2
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1422.9 1040 66.0
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 0.0e+00 1421.4 1055 67.1
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 0.0e+00 1420.6 1062 66.9
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 0.0e+00 1418.7 1052 67.0
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 0.0e+00 1417.9 1042 65.9
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 0.0e+00 1414.8 1044 65.8
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 0.0e+00 1414.4 1055 65.1
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 0.0e+00 1412.1 1057 65.2
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 0.0e+00 1404.8 1050 64.9
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 0.0e+00 1403.3 1050 65.1
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 0.0e+00 1400.6 1055 64.9
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1391.7 1054 64.0
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 0.0e+00 1391.7 1050 64.5
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 0.0e+00 1390.9 1068 64.9
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 0.0e+00 1390.2 1059 66.3
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 0.0e+00 1389.0 1062 63.7
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1387.5 1058 63.3
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 0.0e+00 1385.9 1057 64.0
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 0.0e+00 1385.5 1050 64.3
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 0.0e+00 1384.4 1167 59.6
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 0.0e+00 1384.0 1049 64.3
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 0.0e+00 1383.6 1062 63.5
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1382.5 1056 63.4
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1379.8 1052 65.3
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 0.0e+00 1378.6 1093 63.6
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1373.6 1041 64.6
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 0.0e+00 1371.3 1054 64.0
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 0.0e+00 1370.9 1047 63.5
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 0.0e+00 1370.9 1050 63.7
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1362.8 1040 63.8
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 0.0e+00 1360.9 1059 64.9
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 0.0e+00 1359.7 1051 63.4
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 0.0e+00 1359.7 1066 62.9
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1355.9 1051 63.3
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 0.0e+00 1351.7 1051 63.0
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 0.0e+00 1351.7 1051 63.0
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 0.0e+00 1349.7 1052 62.7
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 0.0e+00 1347.8 1053 62.2
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 0.0e+00 1344.7 1085 62.3
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 0.0e+00 1342.4 1049 62.8
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1338.2 1062 62.2
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 0.0e+00 1337.8 1017 64.2
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 0.0e+00 1336.6 1084 62.2
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 0.0e+00 1335.1 1083 62.0
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 0.0e+00 1329.3 1061 62.4
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 0.0e+00 1326.2 1055 61.6
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 0.0e+00 1320.8 1062 61.7
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 0.0e+00 1310.4 1055 61.4
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 0.0e+00 1305.4 1045 62.0
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 0.0e+00 1301.2 1095 59.5
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 0.0e+00 1300.4 1052 60.2
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 0.0e+00 1295.0 1054 59.8
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 0.0e+00 1268.8 1030 61.7
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 0.0e+00 1267.3 1133 56.8
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 0.0e+00 1249.2 1053 59.3
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 0.0e+00 1248.0 1050 59.6
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 0.0e+00 1246.5 1053 59.1
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 0.0e+00 1242.3 1047 59.1
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 0.0e+00 1226.5 1178 54.9
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 0.0e+00 1221.5 1034 58.2
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 0.0e+00 1211.8 852 68.4
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 0.0e+00 1182.2 1053 56.8
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1180.6 1070 56.5
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 0.0e+00 1171.8 1050 56.6
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 0.0e+00 1167.1 1048 55.8
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 0.0e+00 1147.5 1146 52.3
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 0.0e+00 1129.8 1049 54.4
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 0.0e+00 1099.0 1036 54.2
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 1.3e-303 1046.6 867 59.1
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 8.7e-300 1033.9 1052 51.4
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.2e-286 988.8 1016 49.8
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 3.6e-285 985.3 903 57.1
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 9.4e-278 960.7 680 68.2
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 9.7e-275 950.7 881 56.5
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.2e-253 880.6 1055 45.5
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 1.3e-239 833.9 1059 42.5
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 2.4e-225 786.6 732 54.4
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.3e-222 776.2 704 55.4
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.4e-209 734.2 722 53.9
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 6.6e-207 725.3 725 50.3
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 8.7e-207 724.9 539 66.0
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 7.8e-200 701.8 821 48.1
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 7.3e-198 695.3 510 66.9
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 4.8e-197 692.6 834 43.5
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.3e-190 669.5 668 51.2
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 2.5e-185 653.7 610 56.7
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 5.5e-185 652.5 859 40.0
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 6.7e-183 645.6 513 61.8
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.9e-182 644.0 1013 37.7
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 8.4e-178 628.6 1045 38.5
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 8.7e-175 618.6 530 60.8
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 8.8e-167 592.0 437 68.6
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.0e-162 578.6 512 56.2
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.7e-154 551.2 378 69.6
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-132 478.8 350 66.6
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 3.3e-121 440.7 853 33.2
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 1.6e-120 438.3 446 50.4
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.2e-109 401.4 341 56.9
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 9.5e-105 386.0 356 56.2
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 3.2e-100 370.9 1138 28.6
Hma1.2p1_0400F.1_g144360 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 2.7e-83 314.7 256 62.9
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 3.2e-76 291.2 256 57.8
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 9.0e-71 273.1 982 27.9
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.0e-70 271.9 177 72.9
C07p61790 Brassica napus HOM05D004733 ORTHO05D005925 1.6e-67 262.3 405 40.7
A05p29770 Brassica napus HOM05D004733 ORTHO05D005925 1.3e-66 259.2 278 52.5
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 6.7e-66 256.9 1138 25.0
CAN.G358.90 Capsicum annuum HOM05D004733 ORTHO05D005925 3.3e-65 254.6 225 53.8
Ca_24844_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 3.3e-65 254.6 285 47.4
HPP92_009475 Vanilla planifolia HOM05D004733 ORTHO05D005925 4.6e-59 234.2 204 55.4
Thhalv10021392m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 7.9e-59 233.4 320 42.2
arahy.Tifrunner.gnm1.ann1.T3TR42 Arachis hypogaea HOM05D004733 ORTHO05D005925 5.1e-58 230.7 513 31.0
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 3.3e-57 228.0 249 48.6
QL02p065474 Quercus lobata HOM05D004733 ORTHO05D005925 6.7e-50 203.8 126 77.8
A05p29560 Brassica napus HOM05D004733 ORTHO05D005925 4.8e-48 197.6 221 50.7
Phvul.011G118815 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 5.3e-47 194.1 165 56.4
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 2.4e-39 168.7 328 32.0
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.0e-34 153.3 115 68.7
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 3.1e-31 141.7 187 41.7
TPR.G23227 Trifolium pratense HOM05D004733 ORTHO05D006027 1.0e-29 136.7 86 75.6
Psat4g132320 Pisum sativum HOM05D004733 ORTHO05D010533 1.7e-29 136.0 154 48.7
QL06p046242 Quercus lobata HOM05D004733 ORTHO05D005925 1.7e-29 136.0 106 63.2
Haze_15083 Corylus avellana HOM05D004733 ORTHO05D005925 3.2e-28 131.7 106 62.3
QL06p046224 Quercus lobata HOM05D004733 ORTHO05D005925 7.2e-28 130.6 108 56.5
Medtr1g110810 Medicago truncatula HOM05D004733 ORTHO05D005925 2.1e-27 129.0 154 46.8
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 3.4e-25 121.7 71 73.2
RcHm_v2.0_Chr5g0064711 Rosa chinensis HOM05D004733 ORTHO05D005925 7.0e-23 114.0 166 40.4
arahy.Tifrunner.gnm1.ann1.1JA7FP Arachis hypogaea HOM05D004733 ORTHO05D005925 1.2e-17 96.7 70 62.9
Lj1g0009863 Lotus japonicus HOM05D004733 ORTHO05D001264 4.4e-17 94.7 70 65.7
Cc03_g11510 Coffea canephora HOM05D004733 ORTHO05D005925 7.5e-17 94.0 87 50.6
Phvul.011G118830 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 1.1e-15 90.1 120 44.2
C05p48270 Brassica napus HOM05D004733 ORTHO05D005925 4.1e-15 88.2 107 43.9
Psat2g060920 Pisum sativum HOM05D001085 ORTHO05D000895 1.2e-09 70.1 56 58.9
A05p29540 Brassica napus HOM05D004733 ORTHO05D005925 3.2e-07 62.0 79 44.3


User provided reference genes

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