Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G023500 Populus trichocarpa HOM05D005644 ORTHO05D007092 2.2e-108 395.6 193 100.0
Potri.005G121700 Populus trichocarpa HOM05D005644 ORTHO05D007092 1.3e-105 386.3 193 97.9
Thecc.01G033400 Theobroma cacao HOM05D005644 ORTHO05D007092 3.1e-102 375.2 193 93.8
CiPaw.02G018800 Carya illinoinensis HOM05D005644 ORTHO05D007092 5.3e-102 374.4 193 92.2
TWI73G0320 Tripterygium wilfordii HOM05D005644 ORTHO05D007092 1.2e-101 373.2 193 91.7
Gohir.A02G166400 Gossypium hirsutum HOM05D005644 ORTHO05D007092 3.4e-101 371.7 193 92.7
Gohir.D03G013600 Gossypium hirsutum HOM05D005644 ORTHO05D007092 5.8e-101 370.9 193 92.7
Gorai.003G013900 Gossypium raimondii HOM05D005644 ORTHO05D007092 5.8e-101 370.9 193 92.7
Manes.02G095200 Manihot esculenta HOM05D005644 ORTHO05D007092 7.6e-101 370.5 193 92.2
QL06p046522 Quercus lobata HOM05D005644 ORTHO05D007092 7.6e-101 370.5 192 91.1
vmacro17823 Vaccinium macrocarpon HOM05D005644 ORTHO05D007092 7.6e-101 370.5 194 92.8
MELO3C026580.2 Cucumis melo HOM05D005644 ORTHO05D007092 1.7e-100 369.4 193 90.7
Dinv39995 Davidia involucrata HOM05D005644 ORTHO05D007092 2.9e-100 368.6 190 92.6
Lalb_Chr09g0333481 Lupinus albus HOM05D005644 ORTHO05D007092 2.9e-100 368.6 193 91.2
Prupe.7G156300 Prunus persica HOM05D005644 ORTHO05D007092 3.8e-100 368.2 193 91.2
CsaV3_3G042790 Cucumis sativus L. HOM05D005644 ORTHO05D007092 8.4e-100 367.1 193 90.2
Ciclev10022394m.g Citrus clementina HOM05D005644 ORTHO05D007092 1.4e-99 366.3 193 90.7
Eucgr.I02428 Eucalyptus grandis HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 89.6
Manes.01G136400 Manihot esculenta HOM05D005644 ORTHO05D007092 1.9e-99 365.9 193 91.2
arahy.Tifrunner.gnm1.ann1.59MT2Q Arachis hypogaea HOM05D005644 ORTHO05D007092 2.4e-99 365.5 193 89.6
Phvul.003G254800 Phaseolus vulgaris HOM05D005644 ORTHO05D007092 4.2e-99 364.8 193 89.1
Glyma.16G138200 Glycine max HOM05D005644 ORTHO05D007092 5.4e-99 364.4 193 89.1
Sed0008907 Sechium edule HOM05D005644 ORTHO05D007092 5.4e-99 364.4 193 89.1
Duzib264G1010 Durio zibethinus HOM05D005644 ORTHO05D007092 9.3e-99 363.6 193 90.7
MD02G1145400 Malus domestica HOM05D005644 ORTHO05D007092 1.2e-98 363.2 193 89.6
Psat4g094240 Pisum sativum HOM05D005644 ORTHO05D007092 4.6e-98 361.3 193 88.6
Oeu050374.1 Olea europaea HOM05D005644 ORTHO05D007092 7.9e-98 360.5 190 91.1
arahy.Tifrunner.gnm1.ann1.SR5TCU Arachis hypogaea HOM05D005644 ORTHO05D007092 1.3e-97 359.8 190 89.5
Atru.chr7.2312 Acer truncatum HOM05D005644 ORTHO05D007092 1.8e-97 359.4 191 89.0
Lj2A454T58 Lonicera japonica HOM05D005644 ORTHO05D007092 3.0e-97 358.6 193 89.6
SalBow5G1882 Salvia bowleyana HOM05D005644 ORTHO05D007092 3.0e-97 358.6 190 90.0
GSVIVG01018941001 Vitis vinifera HOM05D005644 ORTHO05D007092 3.9e-97 358.2 193 89.6
Ca_22319_v3 Cicer arietinum L. HOM05D005644 ORTHO05D007092 6.7e-97 357.5 193 87.0
TAR101G0001 Trochodendron aralioides HOM05D005644 ORTHO05D007092 6.7e-97 357.5 193 89.1
Cc07_g09670 Coffea canephora HOM05D005644 ORTHO05D007092 1.1e-96 356.7 190 90.0
Nn1g04949 Nelumbo nucifera HOM05D005644 ORTHO05D007092 1.1e-96 356.7 193 89.6
AT2G18290 Arabidopsis thaliana HOM05D005644 ORTHO05D007092 2.5e-96 355.5 193 87.0
AL3G51550 Arabidopsis lyrata HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 87.0
Medtr8g077200 Medicago truncatula HOM05D005644 ORTHO05D007092 3.3e-96 355.1 193 87.0
MSTRG.3592 Avicennia marina HOM05D005644 ORTHO05D007092 1.3e-95 353.2 190 88.4
ClCG10G013900 Citrullus lanatus HOM05D005644 ORTHO05D007092 1.3e-95 353.2 219 79.0
SGA_v2.0_scaffold44G16541 Striga asiatica HOM05D005644 ORTHO05D007092 1.3e-95 353.2 190 88.4
Lj4g0022669 Lotus japonicus HOM05D005644 ORTHO05D007092 1.6e-95 352.8 194 87.1
Oeu002799.2 Olea europaea HOM05D005644 ORTHO05D007092 2.8e-95 352.1 190 88.4
CANSAT01G2444 Cannabis sativa HOM05D005644 ORTHO05D007092 3.7e-95 351.7 193 86.0
RcHm_v2.0_Chr2g0101251 Rosa chinensis HOM05D005644 ORTHO05D007092 6.2e-95 350.9 193 87.0
Aa31LG8G15730 Aethionema arabicum HOM05D005644 ORTHO05D007092 1.1e-94 350.1 193 85.5
Sp3g31700 Schrenkiella parvula HOM05D005644 ORTHO05D007092 1.4e-94 349.7 193 85.0
Glyma.02G055400 Glycine max HOM05D005644 ORTHO05D007092 1.8e-94 349.4 193 87.0
EL10Ac4g07935 Beta vulgaris HOM05D005644 ORTHO05D007092 2.4e-94 349.0 193 86.0
Carub.0003s3246 Capsella rubella HOM05D005644 ORTHO05D007092 3.1e-94 348.6 193 86.0
Thhalv10022866m.g Eutrema salsugineum HOM05D005644 ORTHO05D007092 3.1e-94 348.6 193 85.5
Migut.L00368 Erythranthe guttata HOM05D005644 ORTHO05D007092 6.9e-94 347.4 190 85.8
Migut.L00376 Erythranthe guttata HOM05D005644 ORTHO05D007092 6.9e-94 347.4 190 85.8
THA.LOC104819776 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 6.9e-94 347.4 193 85.5
Solyc02g062680.3 Solanum lycopersicum HOM05D005644 ORTHO05D007092 9.0e-94 347.1 190 86.8
Sopen02g013700 Solanum pennellii HOM05D005644 ORTHO05D007092 9.0e-94 347.1 190 86.8
Hund21503 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.2e-93 346.7 193 85.0
PGSC0003DMG400015483 Solanum tuberosum HOM05D005644 ORTHO05D007092 1.5e-93 346.3 190 86.8
PSO541G0643 Papaver somniferum HOM05D005644 ORTHO05D007092 2.6e-93 345.5 193 84.5
A06p33310 Brassica napus HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 83.4
C03p59070 Brassica napus HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 83.4
BolC3t18168H Brassica oleracea HOM05D005644 ORTHO05D007092 3.4e-93 345.1 193 83.4
HanXRQChr09g0261331 Helianthus annuus HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 85.0
PSO675G1163 Papaver somniferum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 83.4
PGR031G1764 Punica granatum HOM05D005644 ORTHO05D007092 5.8e-93 344.4 197 84.3
THA.LOC104804235 Tarenaya hassleriana HOM05D005644 ORTHO05D007092 5.8e-93 344.4 193 85.0
BcaB08g34803 Brassica carinata HOM05D005644 ORTHO05D007092 1.3e-92 343.2 193 82.9
FvH4_1g13080 Fragaria vesca HOM05D005644 ORTHO05D007092 1.3e-92 343.2 190 86.3
Sc16g0002690 Simmondsia chinensis HOM05D005644 ORTHO05D007092 2.2e-92 342.4 193 84.5
CAN.G53.17 Capsicum annuum HOM05D005644 ORTHO05D007092 3.8e-92 341.7 190 84.7
FvH4_5g29620 Fragaria vesca HOM05D005644 ORTHO05D007092 8.4e-92 340.5 190 85.3
unitig_37.g12363 Utricularia gibba HOM05D005644 ORTHO05D007092 1.4e-91 339.7 190 84.7
Aqoxy6G01133 Aquilegia oxysepala HOM05D005644 ORTHO05D007092 4.2e-91 338.2 193 82.9
ECA232G0363 Erigeron canadensis HOM05D005644 ORTHO05D007092 4.2e-91 338.2 193 83.4
MBI02_g12270_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.5e-91 337.8 210 79.0
Rhsim11G0151400 Rhododendron simsii HOM05D005644 ORTHO05D007092 5.5e-91 337.8 247 71.3
TPR.G24098 Trifolium pratense HOM05D005644 ORTHO05D007092 1.2e-90 336.7 232 72.4
Lsat_1_v5_gn_4_151201 Lactuca sativa HOM05D005644 ORTHO05D007092 1.6e-90 336.3 182 87.9
AUR62020530 Chenopodium quinoa HOM05D005644 ORTHO05D007092 5.1e-89 331.3 193 82.9
AUR62043224 Chenopodium quinoa HOM05D005644 ORTHO05D007092 5.1e-89 331.3 193 82.9
PGR083G1765 Punica granatum HOM05D005644 ORTHO05D007092 8.7e-89 330.5 193 81.9
ATR0594G186 Amborella trichopoda HOM05D005644 ORTHO05D007092 2.8e-87 325.5 193 81.3
BraA06t26260Z Brassica rapa HOM05D005644 ORTHO05D007092 3.1e-86 322.0 199 77.9
CSS0024834 Camellia sinensis var. sinensis HOM05D005644 ORTHO05D007092 4.0e-86 321.6 164 93.3
AUR62034193 Chenopodium quinoa HOM05D005644 ORTHO05D007092 1.5e-85 319.7 193 79.8
VMungo0251G3244 Vigna mungo HOM05D005644 ORTHO05D007092 1.5e-85 319.7 169 89.3
Zm00001eb342630 Zea mays HOM05D005644 ORTHO05D007092 5.8e-85 317.8 177 83.6
Os05g0579800 Oryza sativa ssp. japonica HOM05D005644 ORTHO05D007092 7.6e-85 317.4 200 76.5
Sabra05G0100200 Salix brachista HOM05D005644 ORTHO05D007092 4.9e-84 314.7 178 88.8
Nitab4.5_0000136g0330 Nicotiana tabacum HOM05D005644 ORTHO05D007092 1.1e-83 313.5 172 86.6
CDE04G3399 Ceratophyllum demersum HOM05D005644 ORTHO05D007092 5.5e-83 311.2 164 87.2
Nitab4.5_0005482g0020 Nicotiana tabacum HOM05D005644 ORTHO05D007092 5.5e-83 311.2 174 86.8
Peaxi162Scf00008g03525 Petunia axillaris HOM05D005644 ORTHO05D007092 5.1e-81 304.7 190 79.5
Zm00001eb294590 Zea mays HOM05D005644 ORTHO05D007092 2.5e-80 302.4 177 79.1
FAN19G1519 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.2e-79 299.3 175 82.9
Atru.chr3.600 Acer truncatum HOM05D005644 ORTHO05D007092 4.8e-79 298.1 194 74.2
BolC7t40857H Brassica oleracea HOM05D005644 ORTHO05D007092 1.6e-74 283.1 189 73.0
FAN28G2376 Fragaria x ananassa HOM05D005644 ORTHO05D003509 6.7e-73 277.7 157 86.6
FAN23G1669 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.8e-73 277.3 158 86.1
FAN08G2945 Fragaria x ananassa HOM05D005644 ORTHO05D007092 1.1e-70 270.4 156 84.0
Cpa.g.sc6.131 Carica papaya HOM05D005644 ORTHO05D007092 6.9e-70 267.7 139 91.4
Hma1.2p1_0789F.1_g218290 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 1.4e-67 260.0 134 93.3
MBI08_g40822_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 6.1e-66 254.6 227 61.2
HPP92_023420 Vanilla planifolia HOM05D005644 ORTHO05D007092 1.5e-64 250.0 194 64.4
Mapoly0106s0034 Marchantia polymorpha HOM05D005644 ORTHO05D007092 1.4e-62 243.4 170 67.1
BcaC06g36396 Brassica carinata HOM05D005644 ORTHO05D007092 5.3e-62 241.5 164 70.7
FAN26G0781 Fragaria x ananassa HOM05D000577 ORTHO05D003509 8.5e-60 234.2 133 85.0
SGA_v2.0_scaffold2G01321 Striga asiatica HOM05D005644 ORTHO05D007092 2.5e-59 232.6 190 64.7
Pp3c7_6320 Physcomitrium patens HOM05D005644 ORTHO05D007092 7.2e-59 231.1 170 64.1
SMO137G0236 Selaginella moellendorffii HOM05D005644 ORTHO05D007092 6.1e-58 228.0 170 63.5
AagrBONN_evm.TU.Sc2ySwM_362.2207 Anthoceros agrestis HOM05D005644 ORTHO05D007092 3.0e-57 225.7 173 61.8
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.8e-55 219.2 167 66.5
MCO15G254 Micromonas commoda HOM05D005644 ORTHO05D007092 2.6e-53 212.6 178 56.7
CARHR108880 Cardamine hirsuta HOM05D005644 ORTHO05D007092 1.5e-51 206.8 112 85.7
PRCOL_00001837 Prasinoderma coloniale HOM05D005644 ORTHO05D007092 8.8e-49 197.6 142 63.4
SEGI_22782 Sequoiadendron giganteum HOM05D005644 ORTHO05D007092 5.0e-44 181.8 131 67.9
Haze_27504 Corylus avellana HOM05D005644 ORTHO05D007092 3.2e-43 179.1 142 57.0
CBR_g49399 Chara braunii HOM05D005644 ORTHO05D007092 1.3e-39 167.2 112 67.0
Cre13.g571850 Chlamydomonas reinhardtii HOM05D005644 ORTHO05D007092 7.0e-38 161.4 144 49.3
DCAR_025950 Daucus carota HOM05D005644 ORTHO05D007092 4.4e-32 142.1 135 57.0
FAN13G0528 Fragaria x ananassa HOM05D005644 ORTHO05D007092 2.8e-31 139.4 163 49.7
MBI02_g42708_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 5.9e-29 131.7 135 57.0
Hma1.2p1_2451F.1_g322360 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 7.8e-29 131.3 135 54.1
MBI02_g23461_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.8e-25 120.2 219 40.6
C07p04570 Brassica napus HOM05D005644 ORTHO05D007092 4.0e-25 119.0 126 50.0
MBI18_g01974_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 2.4e-22 109.8 70 74.3
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 7.0e-22 108.2 123 50.4
MBI02_g17151_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.6e-21 107.1 135 45.9
Hund21501 Selenicereus undatus HOM05D005644 ORTHO05D007092 1.4e-17 94.0 53 86.8
COL.COLO4_22055 Corchorus olitorius HOM05D005644 ORTHO05D007092 8.9e-17 91.3 50 88.0
Hma1.2p1_0450F.1_g155660 Hydrangea macrophylla HOM05D005644 ORTHO05D007092 3.4e-16 89.4 57 71.9
Ah.13g077660 Amaranthus hybridus HOM05D005644 ORTHO05D007092 6.4e-15 85.1 57 66.7
Thecc.08G151500 Theobroma cacao HOM05D005644 ORTHO05D007092 1.8e-09 67.0 33 84.8
MBI16_g04464_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 1.2e-08 64.3 102 39.2
Thecc.01G208400 Theobroma cacao HOM05D005644 ORTHO05D408548 1.4e-06 57.4 34 79.4
Dinv38404 Davidia involucrata HOM05D005644 ORTHO05D007092 5.4e-06 55.5 59 49.2


User provided reference genes

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