Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 4.6e-55 217.6 108 100.0
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 1.9e-53 212.2 108 97.2
Potri.007G022200 Populus trichocarpa HOM05D003805 ORTHO05D004300 2.0e-26 122.5 110 61.8
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 2.2e-25 119.0 109 60.6
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 2.9e-25 118.6 114 58.8
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.4e-24 116.3 117 58.1
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 1.4e-24 116.3 119 57.1
Sabra07G0019300 Salix brachista HOM05D003805 ORTHO05D004300 9.4e-24 113.6 109 58.7
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.2e-23 113.2 106 55.7
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 3.9e-22 108.2 105 59.0
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 8.8e-22 107.1 121 55.4
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 2.6e-21 105.5 118 56.8
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.6e-21 105.5 121 54.5
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.6e-21 105.5 121 54.5
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 4.4e-21 104.8 127 51.2
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 4.4e-21 104.8 112 55.4
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 4.4e-21 104.8 106 53.8
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.8e-20 102.1 111 56.8
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 6.3e-20 100.9 110 56.4
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 1.4e-19 99.8 109 53.2
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 3.1e-19 98.6 108 52.8
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 3.1e-19 98.6 109 49.5
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 4.1e-19 98.2 108 52.8
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 4.1e-19 98.2 118 55.1
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 5.3e-19 97.8 107 52.3
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 6.9e-19 97.4 116 55.2
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.5e-18 96.3 116 51.7
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.5e-18 96.3 106 48.1
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.0e-18 95.9 115 48.7
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 1.0e-17 93.6 118 49.2
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 1.0e-17 93.6 109 46.8
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.3e-17 93.2 111 45.9
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.7e-17 92.8 109 49.5
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 1.7e-17 92.8 110 50.0
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 2.2e-17 92.4 105 46.7
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 2.9e-17 92.0 108 55.6
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 2.9e-17 92.0 108 48.1
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 3.8e-17 91.7 110 49.1
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 6.5e-17 90.9 109 49.5
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.5e-17 90.5 109 47.7
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 8.5e-17 90.5 109 48.6
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.4e-16 89.7 122 44.3
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 2.5e-16 89.0 109 45.9
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 2.5e-16 89.0 119 47.1
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 4.2e-16 88.2 107 46.7
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 5.5e-16 87.8 105 48.6
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 5.5e-16 87.8 108 47.2
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 7.2e-16 87.4 115 44.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 7.2e-16 87.4 108 52.8
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.4e-16 87.0 116 46.6
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 9.4e-16 87.0 116 44.0
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 1.2e-15 86.7 116 45.7
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.2e-15 86.7 116 45.7
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 1.2e-15 86.7 111 43.2
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.2e-15 86.7 107 47.7
Nitab4.5_0000178g0280 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.6e-15 86.3 105 46.7
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 2.1e-15 85.9 116 44.8
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.1e-15 85.9 116 42.2
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.1e-15 85.9 108 45.4
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 2.1e-15 85.9 110 45.5
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 3.6e-15 85.1 113 45.1
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 3.6e-15 85.1 108 46.3
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 3.6e-15 85.1 107 46.7
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 6.1e-15 84.3 115 45.2
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 6.1e-15 84.3 111 45.9
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 6.1e-15 84.3 109 44.0
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 8.0e-15 84.0 113 47.8
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 8.0e-15 84.0 106 47.2
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 8.0e-15 84.0 111 42.3
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 1.0e-14 83.6 108 45.4
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.4e-14 83.2 111 45.0
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 1.4e-14 83.2 110 44.5
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.8e-14 82.8 107 46.7
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-14 82.4 116 45.7
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-14 82.4 116 45.7
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.3e-14 82.4 116 45.7
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.3e-14 82.4 116 45.7
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 2.3e-14 82.4 116 45.7
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 2.3e-14 82.4 110 42.7
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 2.3e-14 82.4 110 43.6
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 3.0e-14 82.0 121 43.0
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 3.0e-14 82.0 112 44.6
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 3.9e-14 81.6 108 42.6
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 3.9e-14 81.6 107 45.8
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 5.2e-14 81.3 106 44.3
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.7e-14 80.9 112 43.8
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 6.7e-14 80.9 117 48.7
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 6.7e-14 80.9 105 45.7
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 6.7e-14 80.9 112 42.9
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 8.8e-14 80.5 110 45.5
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 8.8e-14 80.5 112 46.4
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-13 80.1 112 43.8
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.5e-13 79.7 110 44.5
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 1.5e-13 79.7 112 45.5
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.0e-13 79.3 106 43.4
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 4.4e-13 78.2 115 40.9
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 4.4e-13 78.2 115 40.9
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.4e-13 78.2 112 42.9
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 4.4e-13 78.2 110 43.6
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.4e-13 78.2 107 44.9
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 4.4e-13 78.2 107 44.9
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 5.7e-13 77.8 112 42.0
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 5.7e-13 77.8 112 42.0
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 7.4e-13 77.4 113 44.2
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 7.4e-13 77.4 119 40.3
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.4e-13 77.4 114 45.6
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 9.7e-13 77.0 110 41.8
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 1.3e-12 76.6 113 43.4
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-12 76.3 112 42.0
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-12 76.3 112 42.0
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-12 76.3 112 42.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 1.7e-12 76.3 112 41.1
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.7e-12 76.3 112 42.0
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 2.2e-12 75.9 112 41.1
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 2.2e-12 75.9 113 43.4
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.8e-12 75.5 108 43.5
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 2.8e-12 75.5 101 41.6
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 3.7e-12 75.1 113 43.4
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 3.7e-12 75.1 113 42.5
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 4.8e-12 74.7 116 41.4
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 4.8e-12 74.7 115 45.2
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.8e-12 74.7 113 43.4
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.8e-12 74.7 112 41.1
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.8e-12 74.7 105 43.8
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 6.3e-12 74.3 113 43.4
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 8.2e-12 73.9 112 40.2
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 8.2e-12 73.9 112 40.2
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 8.2e-12 73.9 112 40.2
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 8.2e-12 73.9 108 41.7
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-11 73.6 115 44.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 1.1e-11 73.6 113 42.5
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 1.1e-11 73.6 120 41.7
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 1.4e-11 73.2 114 43.0
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 1.4e-11 73.2 114 43.0
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 1.4e-11 73.2 114 43.0
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 1.4e-11 73.2 115 44.3
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.4e-11 73.2 116 42.2
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 1.8e-11 72.8 113 42.5
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 1.8e-11 72.8 113 42.5
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 1.8e-11 72.8 113 42.5
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 1.8e-11 72.8 111 43.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 1.8e-11 72.8 84 50.0
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.8e-11 72.8 110 42.7
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-11 72.4 113 42.5
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 2.4e-11 72.4 113 42.5
Atru.chr3.624 Acer truncatum HOM05D003805 ORTHO05D004300 3.1e-11 72.0 93 51.6
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 3.1e-11 72.0 113 41.6
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 4.1e-11 71.6 113 40.7
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 5.3e-11 71.2 106 43.4
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 9.1e-11 70.5 110 39.1
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 9.1e-11 70.5 113 38.9
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-10 69.7 146 35.6
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.0e-10 69.3 115 41.7
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 2.0e-10 69.3 117 36.8
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 3.5e-10 68.6 110 42.7
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 3.5e-10 68.6 104 39.4
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 4.5e-10 68.2 145 35.9
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 4.5e-10 68.2 114 41.2
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 5.9e-10 67.8 113 40.7
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.0e-09 67.0 122 36.1
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.0e-09 67.0 104 36.5
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 2.2e-09 65.9 116 37.1
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.2e-09 65.9 102 38.2
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.9e-09 65.5 115 40.9
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 6.5e-09 64.3 114 38.6
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 8.5e-09 63.9 110 39.1
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 2.5e-08 62.4 119 35.3
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 2.5e-08 62.4 119 35.3
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 2.5e-08 62.4 119 35.3
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 3.2e-08 62.0 124 33.9
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 7.2e-08 60.8 121 34.7
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.2e-07 60.1 114 36.0
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 3.6e-07 58.5 104 38.5
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 6.1e-07 57.8 113 38.9
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 1.0e-06 57.0 179 29.6
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 1.4e-06 56.6 39 71.8
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 1.4e-06 56.6 110 37.3
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 2.3e-06 55.8 148 31.8
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.3e-06 55.8 41 58.5


User provided reference genes

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